Ss1.1-Pig4-TMW8026F21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAAAACTGCTTCAGATCTAATGGTTTTATTACTTCTTGGAGATGAATCCATGCAGAAA TTATTTGAGGGAGGAAAGGGTAATGTGTTTCAAAGAGTACTGTCTTGGATTCCATCAAAT AACCACCAGCTACAGCTTGCTGGAGCTTTGGCAATTGCAAATTTTGCCAGAAATGATGGA AATTGTATCCACATGGTAGACAATGGAATTGTAGAGAAACTGATGGATTTACTGGACAGA CATGTGGAAGATGGGAATGTAACTGTGCAACATGCAGCACTAAGTGCCCTCAGAAACCTC GCCATTCCAGTTGTAAATAAAGCAAAGATGTTATCAGCTGGAGTCACAGAGGCAGTTTTA AAATTCCTTAAATCTGAAATGCCCCCAGTTCAGTTCAAACTTCTGGGAACATTAAGAATG TTAATAGATGCGCAAGCAGAAGCTGCTGAACAACTGGGAAAGAATGTTAAGTTAGTGGAG CGTTTGGTGGAGGAGTGCGAAGCCAAAGATCACGCTGGTGTCATGGGGGAGTCGAACAGG CTGCTCTCTGCCCTCATACGACACAGTAAATCAAAAGATGTAATTAAAACCATTGTACAA AGTGGTGGCATCAAGCATCTAGTTACCATGGCAACTAGTGAACATGTAATAATGCAGAAT GAAGCCCTTGTTGCTTTGGCACTAATAGCAGCTTTAGAATTGGGCACTGCTGAGAAAGAT CTAGAAAGTGCTAAACTTGTACAGATTTTACACAGACTACTAGCAGATGAGAGAAGTGCT CCTGAAATCAAGTATAATTCCATGGTCCTGATCTGTGCTCTCATGGGATCTGAATCACTA CACAAGGAAGTTCAGGATTTGGCCTTTCTAGATGTTGTATCCAAACTTCGCGGTCATGAG AACAAAAGCGTTGCTCAACAGGCCTCTCTCACAGAGCAGAGACTTGCTGTGGAAAGCTGA GATCTGCCCCTCCCTGATACATCTCTGACTTTCCCTTTGTCCTCCATCCAGCTGCCTCTT CTGCTTCATTCTCCTCCACATCACTTGTGCATGCGTGTAATGTTCCAATACCAATTGAAG AACTGCTGTAGGTACCTGCCCAATAAGATTTCTAAACCCACAGTTAGTGTGAACATGAAT TTGTCAAAGGCAAGTCTCCACCCATAACTGTTTTCTTGTGTTCCTGTTGCTTGAGCTACA CTGAGTAGAATGTGCATGTTGTAGTCCTCTGATGATGTAAACTTGGTACCACATGATGAC TTGCTCCTCATCCTTGGTAAACTACATAATAATGTACTGGTAAATTAGAAACAAATAAGA ATGCAGCAGGACCCAACCAGCTTATGAAAGATGGAATTGAATCGTAAAAAGAGCTCCATT TATTGGTGCTTGGAAAGCACAGTGACCAAAAAAAAACCTGTATGGCTGCTCATTCATTAG TCTTACCTACTAATGTCAAACTCATGGTACCTAGAGTTAAATAAAATCCAGTGCTCTTAC TCTTTACCCTATGGTTTCTCCTTCTTCCTATGTAGACTCTTGAAACGGCCACAAATGTGG CAAGACTTCCTGAGCTTGTTTTTATTTCATATTTAATTGGCCATCATCAGTAGCCTGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAAAACTGCTTCAGATCTAATGGTTTTATTACTTCTTGGAGATGAATCCATGCAGAAA TTATTTGAGGGAGGAAAGGGTAATGTGTTTCAAAGAGTACTGTCTTGGATTCCATCAAAT AACCACCAGCTACAGCTTGCTGGAGCTTTGGCAATTGCAAATTTTGCCAGAAATGATGGA AATTGTATCCACATGGTAGACAATGGAATTGTAGAGAAACTGATGGATTTACTGGACAGA CATGTGGAAGATGGGAATGTAACTGTGCAACATGCAGCACTAAGTGCCCTCAGAAACCTC GCCATTCCAGTTGTAAATAAAGCAAAGATGTTATCAGCTGGAGTCACAGAGGCAGTTTTA AAATTCCTTAAATCTGAAATGCCCCCAGTTCAGTTCAAACTTCTGGGAACATTAAGAATG TTAATAGATGCGCAAGCAGAAGCTGCTGAACAACTGGGAAAGAATGTTAAGTTAGTGGAG CGTTTGGTGGAGGAGTGCGAAGCCAAAGATCACGCTGGTGTCATGGGGGAGTCGAACAGG CTGCTCTCTGCCCTCATACGACACAGTAAATCAAAAGATGTAATTAAAACCATTGTACAA AGTGGTGGCATCAAGCATCTAGTTACCATGGCAACTAGTGAACATGTAATAATGCAGAAT GAAGCCCTTGTTGCTTTGGCACTAATAGCAGCTTTAGAATTGGGCACTGCTGAGAAAGAT CTAGAAAGTGCTAAACTTGTACAGATTTTACACAGACTACTAGCAGATGAGAGAAGTGCT CCTGAAATCAAGTATAATTCCATGGTCCTGATCTGTGCTCTCATGGGATCTGAATCACTA CACAAGGAAGTTCAGGATTTGGCCTTTCTAGATGTTGTATCCAAACTTCGCGGTCATGAG AACAAAAGCGTTGCTCAACAGGCCTCTCTCACAGAGCAGAGACTTGCTGTGGAAAGCTGA GATCTGCCCCTCCCTGATACATCTCTGACTTTCCCTTTGTCCTCCATCCAGCTGCCTCTT CTGCTTCATTCTCCTCCACATCACTTGTGCATGCGTGTAATGTTCCAATACCAATTGAAG AACTGCTGTAGGTACCTGCCCAATAAGATTTCTAAACCCACAGTTAGTGTGAACATGAAT TTGTCAAAGGCAAGTCTCCACCCATAACTGTTTTCTTGTGTTCCTGTTGCTTGAGCTACA CTGAGTAGAATGTGCATGTTGTAGTCCTCTGATGATGTAAACTTGGTACCACATGATGAC TTGCTCCTCATCCTTGGTAAACTACATAATAATGTACTGGTAAATTAGAAACAAATAAGA ATGCAGCAGGACCCAACCAGCTTATGAAAGATGGAATTGAATCGTAAAAAGAGCTCCATT TATTGGTGCTTGGAAAGCACAGTGACCAAAAAAAAACCTGTATGGCTGCTCATTCATTAG TCTTACCTACTAATGTCAAACTCATGGTACCTAGAGTTAAATAAAATCCAGTGCTCTTAC TCTTTACCCTATGGTTTCTCCTTCTTCCTATGTAGACTCTTGAAACGGCCACAAATGTGG CAAGACTTCCTGAGCTTGTTTTTATTTCATATTTAATTGGCCATCATCAGTAGCCTGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 42-175, - strand, RNAz p=0.79707 | |
| 577-695, + strand, RNAz p=0.546718 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-175, - strand, RNAz p=0.79707 | |
| 577-695, + strand, RNAz p=0.546718 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 42-175, gnl|bosTau2|chr6 (10322819-10322952) | |
| 42-175, gnl|canFam2|chr32 (23590704-23590852) | |
| 42-175, gnl|danRer3|chr19 (64025093-64024946) | |
| 42-175, gnl|dasNov1|scaffold_47743 (3118-3244) | |
| 42-175, gnl|fr1|chrUn (190871730-190871877) | |
| 42-175, gnl|galGal2|chr4 (60279387-60279534) | |
| 42-175, gnl|hg17|chr4 (99695686-99695834) | |
| 42-175, gnl|Hg17|chr4 (99695694-99695827) | |
| 42-175, gnl|loxAfr1|scaffold_6636 (64874-64726) | |
| 42-175, gnl|mm7|chr3 (138767242-138767094) | |
| 42-175, gnl|Mm7|chr3 (138767232-138767099) | |
| 42-175, gnl|monDom2|scaffold_37 (14575597-14575449) | |
| 42-175, gnl|oryCun1|scaffold_163726 (4152-4270) | |
| 42-175, gnl|panTro1|chr3 (116031911-116032059) | |
| 42-175, gnl|rheMac2|chr5 (91340047-91340195) | |
| 42-175, gnl|rn3|chr2 (236530942-236530794) | |
| 42-175, gnl|tetNig1|chrUn_random (161969430-161969574) | |
| 42-175, gnl|xenTro1|scaffold_222 (1674020-1674163) | |
| 297-436, gnl|bosTau2|chr6 (10325458-10325597) | |
| 297-436, gnl|Hg17|chr4 (99698346-99698473) | |
| 297-436, gnl|Mm7|chr3 (138764869-138764739) | |
| 577-704, gnl|bosTau2|chr6 (10328372-10328499) | |
| 577-704, gnl|Hg17|chr4 (99712265-99712392) | |
| 577-704, gnl|Mm7|chr3 (138754334-138754207) | |
| 832-1009, gnl|bosTau2|chr6 (10340297-10340474) | |
| 832-1009, gnl|canFam2|chr32 (23609722-23609922) | |
| 832-1009, gnl|dasNov1|scaffold_182777 (3918-3709) | |
| 832-1009, gnl|echTel1|scaffold_297124 (1031-1237) | |
| 832-1009, gnl|fr1|chrUn (190873370-190873569) | |
| 832-1009, gnl|galGal2|chr4 (60290420-60290621) | |
| 832-1009, gnl|hg17|chr4 (99720308-99720511) | |
| 832-1009, gnl|Hg17|chr4 (99720318-99720502) | |
| 832-1009, gnl|loxAfr1|scaffold_6636 (40415-40206) | |
| 832-1009, gnl|mm7|chr3 (138736270-138736063) | |
| 832-1009, gnl|Mm7|chr3 (138736258-138736048) | |
| 832-1009, gnl|monDom2|scaffold_37 (14547993-14547794) | |
| 832-1009, gnl|oryCun1|scaffold_213701 (318993-318799) | |
| 832-1009, gnl|panTro1|chr3 (116056457-116056660) | |
| 832-1009, gnl|rheMac2|chr5 (91363865-91364068) | |
| 832-1009, gnl|rn3|chr2 (236510979-236510770) | |
| 832-1009, gnl|xenTro1|scaffold_222 (1682284-1682486) | |
| 1012-1620, gnl|bosTau2|chr6 (10340455-10341053) | |
| 1012-1620, gnl|Hg17|chr4 (99720483-99721106) | |
| 1012-1620, gnl|Mm7|chr3 (138736082-138735444) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-175, gnl|bosTau2|chr6 (10322819-10322952) | |
| 42-175, gnl|canFam2|chr32 (23590704-23590852) | |
| 42-175, gnl|danRer3|chr19 (64025093-64024946) | |
| 42-175, gnl|dasNov1|scaffold_47743 (3118-3244) | |
| 42-175, gnl|fr1|chrUn (190871730-190871877) | |
| 42-175, gnl|galGal2|chr4 (60279387-60279534) | |
| 42-175, gnl|hg17|chr4 (99695686-99695834) | |
| 42-175, gnl|Hg17|chr4 (99695694-99695827) | |
| 42-175, gnl|loxAfr1|scaffold_6636 (64874-64726) | |
| 42-175, gnl|mm7|chr3 (138767242-138767094) | |
| 42-175, gnl|Mm7|chr3 (138767232-138767099) | |
| 42-175, gnl|monDom2|scaffold_37 (14575597-14575449) | |
| 42-175, gnl|oryCun1|scaffold_163726 (4152-4270) | |
| 42-175, gnl|panTro1|chr3 (116031911-116032059) | |
| 42-175, gnl|rheMac2|chr5 (91340047-91340195) | |
| 42-175, gnl|rn3|chr2 (236530942-236530794) | |
| 42-175, gnl|tetNig1|chrUn_random (161969430-161969574) | |
| 42-175, gnl|xenTro1|scaffold_222 (1674020-1674163) | |
| 297-436, gnl|bosTau2|chr6 (10325458-10325597) | |
| 297-436, gnl|Hg17|chr4 (99698346-99698473) | |
| 297-436, gnl|Mm7|chr3 (138764869-138764739) | |
| 577-704, gnl|bosTau2|chr6 (10328372-10328499) | |
| 577-704, gnl|Hg17|chr4 (99712265-99712392) | |
| 577-704, gnl|Mm7|chr3 (138754334-138754207) | |
| 832-1009, gnl|bosTau2|chr6 (10340297-10340474) | |
| 832-1009, gnl|canFam2|chr32 (23609722-23609922) | |
| 832-1009, gnl|dasNov1|scaffold_182777 (3918-3709) | |
| 832-1009, gnl|echTel1|scaffold_297124 (1031-1237) | |
| 832-1009, gnl|fr1|chrUn (190873370-190873569) | |
| 832-1009, gnl|galGal2|chr4 (60290420-60290621) | |
| 832-1009, gnl|hg17|chr4 (99720308-99720511) | |
| 832-1009, gnl|Hg17|chr4 (99720318-99720502) | |
| 832-1009, gnl|loxAfr1|scaffold_6636 (40415-40206) | |
| 832-1009, gnl|mm7|chr3 (138736270-138736063) | |
| 832-1009, gnl|Mm7|chr3 (138736258-138736048) | |
| 832-1009, gnl|monDom2|scaffold_37 (14547993-14547794) | |
| 832-1009, gnl|oryCun1|scaffold_213701 (318993-318799) | |
| 832-1009, gnl|panTro1|chr3 (116056457-116056660) | |
| 832-1009, gnl|rheMac2|chr5 (91363865-91364068) | |
| 832-1009, gnl|rn3|chr2 (236510979-236510770) | |
| 832-1009, gnl|xenTro1|scaffold_222 (1682284-1682486) | |
| 1012-1620, gnl|bosTau2|chr6 (10340455-10341053) | |
| 1012-1620, gnl|Hg17|chr4 (99720483-99721106) | |
| 1012-1620, gnl|Mm7|chr3 (138736082-138735444) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| clu (1.19646) | |
| tes (0.415628) | |
| ill (0.351185) | |
| mcp (0.170648) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| spc (0.113366) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.19646) | |
| tes (0.415628) | |
| ill (0.351185) | |
| mcp (0.170648) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| spc (0.113366) |