Ss1.1-Pig4-TMW8026H02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCTATGGCGGCAGCCAGGGCACAGAGTCGTCCCTCTATGCCCATGGCTACCTCAAAG GCGCCAAGGGCCCCGGCATCACGGGAACCAAAGGGGACCCAAGCGGAGCAGGTCCCGAGG CCTCCCTGGAGCCCGGGGCAGACTCTGTGTCACTGCAGGCTTTCTCCCGTGCCCAGCCAG GTGCCACCCCTGGCGTCTACCAGCAGTCAGCAGCCGAGGCAAGTGGCGGTCAGGGCGCTG CCACCAACAGCCAGTCATATACCATCATGTCACCTGCTGTGCTCAAATCTGAGCTCCAGA GCCCCACCCATCCCAGCTCTTCCCTGCCACCGGCCACGAGTCCCACTGCCCAGGAGTCCT ACAGCCAGTACCCTGTTCCTGACGTCTCCACCTACCAGTACGACGAGACGTCCGGCTACT ACTACGACCCTCAGACCGGCCTCTACTATGACCCCAACTCCCAGTACTACTACAACGCCC AGAGCCAGCAGTACCTGTACTGGGATGGCGAGAGGCGGACCTACGTCCCTGCCCTGGAGC AGTCAGCTGATGGGCATAAGGAGACGGGGGCGCCCTCGAAGGAGGGCAAGGAGAAGAAGG AAAAGCACAAGACCAAGACGGCCCAACAGATTGCCAAGGACATGGAACGTTGGGCCCGCA GCCTCAACAAACAAAAAGAAAACTTCAAGAACAGCTTCCAGCCCATCAGCTCCCTGCGGG ACGATGAAAGACGGGAGTCGGCCACCGCGGATGCTGGTTACGCCATCCTCGAGAAGAAGG GAGCACTAGCCGAGAGGCAGCACACCAGCATGGACCTGCCAAAGCTGGCCAGTGATGACC GCCCAAGCCCACCGCGGGGACTGGTGGCAGCCTATAGTGGGGAGAGTGACAGCGAAGAGG AGCAGGAGCGCGGGGGCCCGGAGCGGGAGGAGAAGCTCACTGACTGGCAGAAGCTGGCCT GTCTGCTCTGCCGGCGCCAGTTCCCTAGCAAGGAGGCGCTCATCCGGCACCAGCAGCTCT CCGGGCTCCACAAGCAAAACCTTGAGATTCACCGGCGAGCCCACCTGTCAGAAAATGAGC TGGAAGCACTTGAGAAGAACGACATGGAGCAAATGAAGTACCGGGACCGTGCAGCTGAAC GCAGAGAGAAGTATGGCATCCCTGAGCCACCCGAGCCCAAGAGGAGGAAGTATGGTGGCA TGTCTGCAGCCTCTGTGGACTTCGAGCAGCCCACGCGGGACGGGCTGGGCAGTGACAACA TTGGCAGTCGCATGCTCCAGGCTATGGGCTGGAAAGAGGGCAGTGGCCTGGGCCGCAAAA AACAGGGCATCGTGACTCCCATTGAGGCCCAGACGCGGGTGCGAGGCTCCGGCTTGGGTG CCCGAGGTAGCTCCTATGGGGTCACTTCAACCGAGTCCTACAAGGAGACGCTGCACAAGA CAATGGTGACCCGCTTCAACGAGGCCCAGTGAGCAGCTCGGAGACCTGCTTCTACTTAAT GTTGGGTGTCTAGCCTGGGGCAGGGGAGAATGATAAAGTGATGGGTGGTCTGAGCAGGGC CCTGTGCCTGTCTGCCAGCCCCACTCCCCAGCCAGAGAGGCTCTGACCAAGTCGGAATGC GACTTGGTGACTTTTGTTGAAAAACTGGGCTGGAATCATGACCTTCTTTTTGTAATAAAA GCCAAAAAGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCTATGGCGGCAGCCAGGGCACAGAGTCGTCCCTCTATGCCCATGGCTACCTCAAAG GCGCCAAGGGCCCCGGCATCACGGGAACCAAAGGGGACCCAAGCGGAGCAGGTCCCGAGG CCTCCCTGGAGCCCGGGGCAGACTCTGTGTCACTGCAGGCTTTCTCCCGTGCCCAGCCAG GTGCCACCCCTGGCGTCTACCAGCAGTCAGCAGCCGAGGCAAGTGGCGGTCAGGGCGCTG CCACCAACAGCCAGTCATATACCATCATGTCACCTGCTGTGCTCAAATCTGAGCTCCAGA GCCCCACCCATCCCAGCTCTTCCCTGCCACCGGCCACGAGTCCCACTGCCCAGGAGTCCT ACAGCCAGTACCCTGTTCCTGACGTCTCCACCTACCAGTACGACGAGACGTCCGGCTACT ACTACGACCCTCAGACCGGCCTCTACTATGACCCCAACTCCCAGTACTACTACAACGCCC AGAGCCAGCAGTACCTGTACTGGGATGGCGAGAGGCGGACCTACGTCCCTGCCCTGGAGC AGTCAGCTGATGGGCATAAGGAGACGGGGGCGCCCTCGAAGGAGGGCAAGGAGAAGAAGG AAAAGCACAAGACCAAGACGGCCCAACAGATTGCCAAGGACATGGAACGTTGGGCCCGCA GCCTCAACAAACAAAAAGAAAACTTCAAGAACAGCTTCCAGCCCATCAGCTCCCTGCGGG ACGATGAAAGACGGGAGTCGGCCACCGCGGATGCTGGTTACGCCATCCTCGAGAAGAAGG GAGCACTAGCCGAGAGGCAGCACACCAGCATGGACCTGCCAAAGCTGGCCAGTGATGACC GCCCAAGCCCACCGCGGGGACTGGTGGCAGCCTATAGTGGGGAGAGTGACAGCGAAGAGG AGCAGGAGCGCGGGGGCCCGGAGCGGGAGGAGAAGCTCACTGACTGGCAGAAGCTGGCCT GTCTGCTCTGCCGGCGCCAGTTCCCTAGCAAGGAGGCGCTCATCCGGCACCAGCAGCTCT CCGGGCTCCACAAGCAAAACCTTGAGATTCACCGGCGAGCCCACCTGTCAGAAAATGAGC TGGAAGCACTTGAGAAGAACGACATGGAGCAAATGAAGTACCGGGACCGTGCAGCTGAAC GCAGAGAGAAGTATGGCATCCCTGAGCCACCCGAGCCCAAGAGGAGGAAGTATGGTGGCA TGTCTGCAGCCTCTGTGGACTTCGAGCAGCCCACGCGGGACGGGCTGGGCAGTGACAACA TTGGCAGTCGCATGCTCCAGGCTATGGGCTGGAAAGAGGGCAGTGGCCTGGGCCGCAAAA AACAGGGCATCGTGACTCCCATTGAGGCCCAGACGCGGGTGCGAGGCTCCGGCTTGGGTG CCCGAGGTAGCTCCTATGGGGTCACTTCAACCGAGTCCTACAAGGAGACGCTGCACAAGA CAATGGTGACCCGCTTCAACGAGGCCCAGTGAGCAGCTCGGAGACCTGCTTCTACTTAAT GTTGGGTGTCTAGCCTGGGGCAGGGGAGAATGATAAAGTGATGGGTGGTCTGAGCAGGGC CCTGTGCCTGTCTGCCAGCCCCACTCCCCAGCCAGAGAGGCTCTGACCAAGTCGGAATGC GACTTGGTGACTTTTGTTGAAAAACTGGGCTGGAATCATGACCTTCTTTTTGTAATAAAA GCCAAAAAGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-113, - strand, RNAz p=0.997669 | |
| 4-113, - strand, RNAz p=0.957503 | |
| 667-1692, - strand, RNAz p=0.801343 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-113, - strand, RNAz p=0.997669 | |
| 4-113, - strand, RNAz p=0.957503 | |
| 667-1692, - strand, RNAz p=0.801343 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-113, gnl|bosTau2|chr27 (15950227-15950339) | |
| 1-113, gnl|canFam2|chrX (40720385-40720989) | |
| 1-113, gnl|dasNov1|scaffold_57539 (7437-8014) | |
| 1-113, gnl|echTel1|scaffold_311954 (43950-43374) | |
| 1-113, gnl|hg17|chrX (46796830-46797409) | |
| 1-113, gnl|Hg17|chrX (46796944-46797056) | |
| 1-113, gnl|loxAfr1|scaffold_12964 (4828-4230) | |
| 1-113, gnl|mm7|chrX (19080437-19081023) | |
| 1-113, gnl|Mm7|chrX (19080548-19080657) | |
| 1-113, gnl|monDom2|scaffold_134 (501732-501153) | |
| 1-113, gnl|panTro1|chrX (48375606-48376183) | |
| 1-113, gnl|rheMac2|chrX (45011380-45011959) | |
| 1-113, gnl|rn3|chrX (12966842-12966264) | |
| 239-375, gnl|bosTau2|chr27 (15950664-15950799) | |
| 239-375, gnl|Hg17|chrX (46797388-46797522) | |
| 239-375, gnl|Mm7|chrX (19081001-19081139) | |
| 628-788, gnl|bosTau2|chr22 (38376697-38376857) | |
| 628-788, gnl|Hg17|chr3 (50126385-50126543) | |
| 628-788, gnl|Mm7|chr9 (107476893-107476733) | |
| 856-1034, gnl|bosTau2|chr22 (38377792-38377970) | |
| 856-1034, gnl|Hg17|chr3 (50127866-50128044) | |
| 856-1034, gnl|Mm7|chr9 (107476016-107475838) | |
| 1108-1217, gnl|bosTau2|chr27 (15953531-15953640) | |
| 1108-1217, gnl|canFam2|chrX (40723358-40723459) | |
| 1108-1217, gnl|danRer3|chr19 (16941563-16941661) | |
| 1108-1217, gnl|echTel1|scaffold_311954 (40701-40600) | |
| 1108-1217, gnl|fr1|chrUn (44960058-44960156) | |
| 1108-1217, gnl|galGal2|chr12 (2802325-2802426) | |
| 1108-1217, gnl|hg17|chrX (46801717-46801818) | |
| 1108-1217, gnl|Hg17|chrX (46801716-46801825) | |
| 1108-1217, gnl|loxAfr1|scaffold_12964 (1058-957) | |
| 1108-1217, gnl|mm7|chrX (19083312-19083413) | |
| 1108-1217, gnl|Mm7|chrX (19083311-19083420) | |
| 1108-1217, gnl|monDom2|scaffold_134 (499549-499450) | |
| 1108-1217, gnl|oryCun1|scaffold_202974 (5683-5582) | |
| 1108-1217, gnl|panTro1|chrX (48380492-48380593) | |
| 1108-1217, gnl|rheMac2|chrX (45016233-45016334) | |
| 1108-1217, gnl|rn3|chrX (12964048-12963947) | |
| 1108-1217, gnl|tetNig1|chr11 (4776708-4776620) | |
| 1108-1217, gnl|xenTro1|scaffold_189 (20036-19951) | |
| 1345-1692, gnl|bosTau2|chr27 (15953929-15954270) | |
| 1345-1692, gnl|Hg17|chrX (46802125-46802463) | |
| 1345-1692, gnl|Mm7|chrX (19083707-19084036) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-113, gnl|bosTau2|chr27 (15950227-15950339) | |
| 1-113, gnl|canFam2|chrX (40720385-40720989) | |
| 1-113, gnl|dasNov1|scaffold_57539 (7437-8014) | |
| 1-113, gnl|echTel1|scaffold_311954 (43950-43374) | |
| 1-113, gnl|hg17|chrX (46796830-46797409) | |
| 1-113, gnl|Hg17|chrX (46796944-46797056) | |
| 1-113, gnl|loxAfr1|scaffold_12964 (4828-4230) | |
| 1-113, gnl|mm7|chrX (19080437-19081023) | |
| 1-113, gnl|Mm7|chrX (19080548-19080657) | |
| 1-113, gnl|monDom2|scaffold_134 (501732-501153) | |
| 1-113, gnl|panTro1|chrX (48375606-48376183) | |
| 1-113, gnl|rheMac2|chrX (45011380-45011959) | |
| 1-113, gnl|rn3|chrX (12966842-12966264) | |
| 239-375, gnl|bosTau2|chr27 (15950664-15950799) | |
| 239-375, gnl|Hg17|chrX (46797388-46797522) | |
| 239-375, gnl|Mm7|chrX (19081001-19081139) | |
| 628-788, gnl|bosTau2|chr22 (38376697-38376857) | |
| 628-788, gnl|Hg17|chr3 (50126385-50126543) | |
| 628-788, gnl|Mm7|chr9 (107476893-107476733) | |
| 856-1034, gnl|bosTau2|chr22 (38377792-38377970) | |
| 856-1034, gnl|Hg17|chr3 (50127866-50128044) | |
| 856-1034, gnl|Mm7|chr9 (107476016-107475838) | |
| 1108-1217, gnl|bosTau2|chr27 (15953531-15953640) | |
| 1108-1217, gnl|canFam2|chrX (40723358-40723459) | |
| 1108-1217, gnl|danRer3|chr19 (16941563-16941661) | |
| 1108-1217, gnl|echTel1|scaffold_311954 (40701-40600) | |
| 1108-1217, gnl|fr1|chrUn (44960058-44960156) | |
| 1108-1217, gnl|galGal2|chr12 (2802325-2802426) | |
| 1108-1217, gnl|hg17|chrX (46801717-46801818) | |
| 1108-1217, gnl|Hg17|chrX (46801716-46801825) | |
| 1108-1217, gnl|loxAfr1|scaffold_12964 (1058-957) | |
| 1108-1217, gnl|mm7|chrX (19083312-19083413) | |
| 1108-1217, gnl|Mm7|chrX (19083311-19083420) | |
| 1108-1217, gnl|monDom2|scaffold_134 (499549-499450) | |
| 1108-1217, gnl|oryCun1|scaffold_202974 (5683-5582) | |
| 1108-1217, gnl|panTro1|chrX (48380492-48380593) | |
| 1108-1217, gnl|rheMac2|chrX (45016233-45016334) | |
| 1108-1217, gnl|rn3|chrX (12964048-12963947) | |
| 1108-1217, gnl|tetNig1|chr11 (4776708-4776620) | |
| 1108-1217, gnl|xenTro1|scaffold_189 (20036-19951) | |
| 1345-1692, gnl|bosTau2|chr27 (15953929-15954270) | |
| 1345-1692, gnl|Hg17|chrX (46802125-46802463) | |
| 1345-1692, gnl|Mm7|chrX (19083707-19084036) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cag (0.302389) | |
| hyp (0.285673) | |
| nmm (0.265604) | |
| ece (0.229305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| cli (0.152812) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| hyp (0.285673) | |
| nmm (0.265604) | |
| ece (0.229305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| cli (0.152812) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ecc (0.115035) |