Non-Coding RNA Search

Ss1.1-Pig4-TMW8026H03.3

Sequence:


               
               ACGAACGAACCGCGTGTGGGGCCGGCACATCCTAGCAGGCAGCCCCTGGCGCCTGCTGCC
TCAGGGATGCTCCAACCACCCTCGTTCTCCTGCAGCAGCCCTGGCTCCCCACCTCCCCCA
GCCTGCCATGGGGCCCCATCAGCCTGGCCCCACCCCATGGAGAACCCAAAGTCTTACTGT
ATATAACTCCAGGTGACATTTCTATATTTATAGCAGTGTTGAAACCCCATGTGTTTTACA
CAGAGAACCACCCTCTCCAACCCCCTCCCTTCCCCACCCCCAAAAAAGTTTTTCAGAACC
CTTCTGGTTCCTGGGGCAGGCGGAAACAGGCTCACGGGTTATGTGTTGGCTGCAGCAGTG
ATTCCAACGAGCAGCTATTGGGGGGGAACACAACAACAAAAAAATCATTAAAAAAAGATT
TATAAAACAATTATTTAGGATGTTTGTGATTTGCCGACCTTGCTATAGATGCCATGTTAC
CAATGATTTCCTGTGGTGGGGGCTTGTCATTGTTTACTCTTTTATTTACCAACTTCTGGC
CTAGGCATGACAGTGGGCACCATCCCCCAGCCCTGGCTGGGCCCAGCACCTGTGTTCTGT
GTTAGAAAGGTCTTATATATATATATAATTACATATATATATATAAATATATGTAATTGG
GGGGCCCTGTTCCTTGCACATTTTACAGTTACCTCATTTTTCCCATGTATGTATTTGAGA
AAATGCTAATATATAGAGAAAAAAATGGTTCTTAAAGCTTAAATGTGTGGTTTTTTCCAT
TCCATTGGATTCACATTGGTTTGTAGCATTTAACATAACTAGTATGTTGTATTATATATA
TGTGTATACTGATTGAAATTTTTAACAGATTTGTACTTTTTTTAAAATGAAAGTTGCTAG
TTCTGCTTGACCAAGTAGTGCAATCATTATTTTTTTTAATATTGTTGCTGATTTCAGAGG
GATATTCACTAATAAATGTATGATGTATATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAACGAACCGCGTGTGGGGCCGGCACATCCTAGCAGGCAGCCCCTGGCGCCTGCTGCC
TCAGGGATGCTCCAACCACCCTCGTTCTCCTGCAGCAGCCCTGGCTCCCCACCTCCCCCA
GCCTGCCATGGGGCCCCATCAGCCTGGCCCCACCCCATGGAGAACCCAAAGTCTTACTGT
ATATAACTCCAGGTGACATTTCTATATTTATAGCAGTGTTGAAACCCCATGTGTTTTACA
CAGAGAACCACCCTCTCCAACCCCCTCCCTTCCCCACCCCCAAAAAAGTTTTTCAGAACC
CTTCTGGTTCCTGGGGCAGGCGGAAACAGGCTCACGGGTTATGTGTTGGCTGCAGCAGTG
ATTCCAACGAGCAGCTATTGGGGGGGAACACAACAACAAAAAAATCATTAAAAAAAGATT
TATAAAACAATTATTTAGGATGTTTGTGATTTGCCGACCTTGCTATAGATGCCATGTTAC
CAATGATTTCCTGTGGTGGGGGCTTGTCATTGTTTACTCTTTTATTTACCAACTTCTGGC
CTAGGCATGACAGTGGGCACCATCCCCCAGCCCTGGCTGGGCCCAGCACCTGTGTTCTGT
GTTAGAAAGGTCTTATATATATATATAATTACATATATATATATAAATATATGTAATTGG
GGGGCCCTGTTCCTTGCACATTTTACAGTTACCTCATTTTTCCCATGTATGTATTTGAGA
AAATGCTAATATATAGAGAAAAAAATGGTTCTTAAAGCTTAAATGTGTGGTTTTTTCCAT
TCCATTGGATTCACATTGGTTTGTAGCATTTAACATAACTAGTATGTTGTATTATATATA
TGTGTATACTGATTGAAATTTTTAACAGATTTGTACTTTTTTTAAAATGAAAGTTGCTAG
TTCTGCTTGACCAAGTAGTGCAATCATTATTTTTTTTAATATTGTTGCTGATTTCAGAGG
GATATTCACTAATAAATGTATGATGTATATCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               35-348, - strand, RNAz p=0.951452
               

               
               536-716, - strand, RNAz p=0.999428

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-348, - strand, RNAz p=0.951452
               

               
               536-716, - strand, RNAz p=0.999428

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               536-716, 524247 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM285579.1|), 
blast E-value=6e-23, identity=100% 
               

               
               536-716, UMJ603014468.R1 CSEQFXN30 pituitary Bos taurus cDNA, mRNA sequence 
(gb|CB172632.1|), blast E-value=6e-23, identity=100% 
               

               
               536-716, 4071957 BARC 10BOV Bos taurus cDNA clone 10BOV1_G22 5', mRNA 
(gb|CK947389.1|), blast E-value=6e-23, identity=100% 
               

               
               536-716, 4091524 BARC 10BOV Bos taurus cDNA clone 10BOV29_O03 3', mRNA 
(gb|CK951866.1|), blast E-value=6e-23, identity=100% 
               

               
               536-716, 1244064 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN289225.1|), 
blast E-value=6e-23, identity=100% 
               

               
               536-716, Hw_liver_27_050721_G09 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV782508.1|), blast E-value=9e-19, identity=98.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               536-716, 524247 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM285579.1|), 
blast E-value=6e-23, identity=100% 
               

               
               536-716, UMJ603014468.R1 CSEQFXN30 pituitary Bos taurus cDNA, mRNA sequence 
(gb|CB172632.1|), blast E-value=6e-23, identity=100% 
               

               
               536-716, 4071957 BARC 10BOV Bos taurus cDNA clone 10BOV1_G22 5', mRNA 
(gb|CK947389.1|), blast E-value=6e-23, identity=100% 
               

               
               536-716, 4091524 BARC 10BOV Bos taurus cDNA clone 10BOV29_O03 3', mRNA 
(gb|CK951866.1|), blast E-value=6e-23, identity=100% 
               

               
               536-716, 1244064 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN289225.1|), 
blast E-value=6e-23, identity=100% 
               

               
               536-716, Hw_liver_27_050721_G09 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV782508.1|), blast E-value=9e-19, identity=98.31%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-993, gnl|bosTau2|chr7 (26163087-26162086)
               

               
               3-993, gnl|Hg17|chr5 (175887317-175886319)
               

               
               3-993, gnl|Mm7|chr13 (53764683-53763678)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-993, gnl|bosTau2|chr7 (26163087-26162086)
               

               
               3-993, gnl|Hg17|chr5 (175887317-175886319)
               

               
               3-993, gnl|Mm7|chr13 (53764683-53763678)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               fco (0.314416)
               

               
               cst (0.280073)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               fco (0.314416)
               

               
               cst (0.280073)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	35-348, - strand, RNAz p=0.951452
	536-716, - strand, RNAz p=0.999428

	536-716, 524247 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM285579.1\|), blast E-value=6e-23, identity=100%
	536-716, UMJ603014468.R1 CSEQFXN30 pituitary Bos taurus cDNA, mRNA sequence (gb\|CB172632.1\|), blast E-value=6e-23, identity=100%
	536-716, 4071957 BARC 10BOV Bos taurus cDNA clone 10BOV1_G22 5', mRNA (gb\|CK947389.1\|), blast E-value=6e-23, identity=100%
	536-716, 4091524 BARC 10BOV Bos taurus cDNA clone 10BOV29_O03 3', mRNA (gb\|CK951866.1\|), blast E-value=6e-23, identity=100%
	536-716, 1244064 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN289225.1\|), blast E-value=6e-23, identity=100%
	536-716, Hw_liver_27_050721_G09 Bos taurus CF-24-HW liver cDNA library Bos (gb\|DV782508.1\|), blast E-value=9e-19, identity=98.31%

	3-993, gnl\|bosTau2\|chr7 (26163087-26162086)
	3-993, gnl\|Hg17\|chr5 (175887317-175886319)
	3-993, gnl\|Mm7\|chr13 (53764683-53763678)

	elu (0.385356)
	fbs (0.350693)
	cje (0.330469)
	nco (0.323468)
	fco (0.314416)
	cst (0.280073)
	tes (0.207814)
	nbm (0.198649)
	cmu (0.186393)
	cut (0.169924)
	kid (0.129735)
	ova (0.129132)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	ldo (0.0970026)