Non-Coding RNA Search

Ss1.1-Pig4-TMW8026H14.5

Sequence:


               
               AAAAAGCTGTTAGGTCTCTCTCAGTAAAATAACTGTACCTTAAAAATTTTTTTTTGTTAT
TTGAATCCTGCAGCTATAGCACATAATTTGTTGTTAAATCATTATGTTAAAAACAAATAT
GGGTACAAATCTACATTCTCCTCTGTGCATTTTATAGCAATTTACTATAGCTTAATGTGC
AACTAATTTAAAATAAGGAATCAAATATATTTGATGCCGTGGACGATACAAGTTGAATGT
GGACATGTAGCCACATTAACAACTTGGAAAAAATTTTAAAATGGCAATGCTACAATGAAT
TCTCAGGTGAACTTTTTTTTTTTCAGTTATAAAACATCTATTTTGAATTTGTAAATATTT
TAACTGTTTTATTAAGGCATGTGTATAATAAACTATTCTTTGAAATCTGTTGGGCAGAAT
GCAAACTTAAAGCCATAATGGTAAAAGATGGCATACTGATTGTAAAATAAACAGAAGTAA
TAACAGCTATTGATTTTTTTTGTATCTTTCATAATATAATTTTCTAACAATGCAATAAAA
CCACTAAATTTATATACCCATATCCTGTTAAGATCATGTTTCATTACAAGTGAACTCTCA
TAGTATTTAATTTAATTTCCTGATGTGCTTATCCAAATGTAGCAAAACTAGAAATGTTAG
ATGTTGATTAAATTGACAGTTCAATAAAATTCTCTCAAACGGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCTGTTAGGTCTCTCTCAGTAAAATAACTGTACCTTAAAAATTTTTTTTTGTTAT
TTGAATCCTGCAGCTATAGCACATAATTTGTTGTTAAATCATTATGTTAAAAACAAATAT
GGGTACAAATCTACATTCTCCTCTGTGCATTTTATAGCAATTTACTATAGCTTAATGTGC
AACTAATTTAAAATAAGGAATCAAATATATTTGATGCCGTGGACGATACAAGTTGAATGT
GGACATGTAGCCACATTAACAACTTGGAAAAAATTTTAAAATGGCAATGCTACAATGAAT
TCTCAGGTGAACTTTTTTTTTTTCAGTTATAAAACATCTATTTTGAATTTGTAAATATTT
TAACTGTTTTATTAAGGCATGTGTATAATAAACTATTCTTTGAAATCTGTTGGGCAGAAT
GCAAACTTAAAGCCATAATGGTAAAAGATGGCATACTGATTGTAAAATAAACAGAAGTAA
TAACAGCTATTGATTTTTTTTGTATCTTTCATAATATAATTTTCTAACAATGCAATAAAA
CCACTAAATTTATATACCCATATCCTGTTAAGATCATGTTTCATTACAAGTGAACTCTCA
TAGTATTTAATTTAATTTCCTGATGTGCTTATCCAAATGTAGCAAAACTAGAAATGTTAG
ATGTTGATTAAATTGACAGTTCAATAAAATTCTCTCAAACGGCCAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-703, gnl|bosTau2|chr1 (6137462-6136764)
               

               
               2-703, gnl|Hg17|chr21 (29639653-29640329)
               

               
               2-703, gnl|Mm7|chr16 (87781360-87782049)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-703, gnl|bosTau2|chr1 (6137462-6136764)
               

               
               2-703, gnl|Hg17|chr21 (29639653-29640329)
               

               
               2-703, gnl|Mm7|chr16 (87781360-87782049)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               ret (0.257467)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               eje (0.0988338)

	2-703, gnl\|bosTau2\|chr1 (6137462-6136764)
	2-703, gnl\|Hg17\|chr21 (29639653-29640329)
	2-703, gnl\|Mm7\|chr16 (87781360-87782049)

	fce (0.271592)
	ret (0.257467)
	fbs (0.175346)
	bfe (0.149858)
	eje (0.0988338)