Ss1.1-Pig4-TMW8026I05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGCTGCGGTCTCCGGAGGGGATGGCCGCGGAGCCGGGCGGACTTGGCCCTTGGCTCC AGGATCCTGCTCCCTGGCCCGAAACATGGCCGGGGGTCCTGGCCCACTAACACGGCCTCG CCCCGACACAGTCGCCATGCCCAAGAGAGGGAAGCGACTCAAGTTCCGGGCCCAAGACGC CTGCTCTGGGCGAGTGACCGTGGCGGATTATGCCAACTCGGATCCGGCCGTCGTGAGGTC TGGAAGGGTCAAGAAAGCCGTCGCCAATGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGG CTTGGAAGCCTCCCAGGTTCCTGCAGTGGAAGCTCTTTCTGGGGCTGGTGAGCCTTGTGA CATCATCGACAGCAGTGATGAGATTGATGCCCAGGAGGAAAGCATCCATGAGAGAACTGT CTGCAGAAAAAAGAAAAGCAAGAGGCACAAAGAAGACCTGGACAGGGCTGGAGGAGAAGA GTATCCCATGGATATTTGGCTCTTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAA TTTTTCCCTGATTTGTAAGAATGCCTGGACTGTCACTTGCACTGCTGCCTTTTGGACCAG GTTGTACCGAAGACACTACACGCTGGATGCTTCTCTGCCTTTGCGCCTGCGACCAGAGTC AATGGAGAAGCTGCGCTGTCTCCGGGCATGTGTGATCCGATCTCTGTATCATATGTATGA GCCATTTGCTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACTCCTAGCACATT AAAGAATTCCAAATGCTTACTTTTCTGGTGCAGAAAGATTGTTGGAAACAGACAGGAACC AATGTGGGAATTCAACTTCAAGTTCAAAAAGCAGTCCCCTAGATTAAAGAGTAAGTGTAT GGGAGGATTGCAGCCTCCCATTCAGTATGAAGATGTTCATACCAACCCAGACCAGGACTG CTGCCTACTGCAGGTCACCACCCTCAATTTCATCTTTATTCCAATTGTTATGGGAATGAT ATTTACCCTGTTTACTATCAATGTGAGCACGGACATGCGGCATCATCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGCTGCGGTCTCCGGAGGGGATGGCCGCGGAGCCGGGCGGACTTGGCCCTTGGCTCC AGGATCCTGCTCCCTGGCCCGAAACATGGCCGGGGGTCCTGGCCCACTAACACGGCCTCG CCCCGACACAGTCGCCATGCCCAAGAGAGGGAAGCGACTCAAGTTCCGGGCCCAAGACGC CTGCTCTGGGCGAGTGACCGTGGCGGATTATGCCAACTCGGATCCGGCCGTCGTGAGGTC TGGAAGGGTCAAGAAAGCCGTCGCCAATGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGG CTTGGAAGCCTCCCAGGTTCCTGCAGTGGAAGCTCTTTCTGGGGCTGGTGAGCCTTGTGA CATCATCGACAGCAGTGATGAGATTGATGCCCAGGAGGAAAGCATCCATGAGAGAACTGT CTGCAGAAAAAAGAAAAGCAAGAGGCACAAAGAAGACCTGGACAGGGCTGGAGGAGAAGA GTATCCCATGGATATTTGGCTCTTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAA TTTTTCCCTGATTTGTAAGAATGCCTGGACTGTCACTTGCACTGCTGCCTTTTGGACCAG GTTGTACCGAAGACACTACACGCTGGATGCTTCTCTGCCTTTGCGCCTGCGACCAGAGTC AATGGAGAAGCTGCGCTGTCTCCGGGCATGTGTGATCCGATCTCTGTATCATATGTATGA GCCATTTGCTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACTCCTAGCACATT AAAGAATTCCAAATGCTTACTTTTCTGGTGCAGAAAGATTGTTGGAAACAGACAGGAACC AATGTGGGAATTCAACTTCAAGTTCAAAAAGCAGTCCCCTAGATTAAAGAGTAAGTGTAT GGGAGGATTGCAGCCTCCCATTCAGTATGAAGATGTTCATACCAACCCAGACCAGGACTG CTGCCTACTGCAGGTCACCACCCTCAATTTCATCTTTATTCCAATTGTTATGGGAATGAT ATTTACCCTGTTTACTATCAATGTGAGCACGGACATGCGGCATCATCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 322-452, + strand, RNAz p=0.922756 | |
| 358-452, - strand, RNAz p=0.717346 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 322-452, + strand, RNAz p=0.922756 | |
| 358-452, - strand, RNAz p=0.717346 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 3-194, gnl|bosTau2|chr16 (47260-47452) | |
| 3-194, gnl|Hg17|chr1 (199708166-199708359) | |
| 3-194, gnl|Mm7|chr1 (134251739-134251547) | |
| 283-452, gnl|bosTau2|chr16 (48548-48717) | |
| 283-452, gnl|canFam2|chr7 (3174530-3174348) | |
| 283-452, gnl|danRer3|chr11 (21904183-21904352) | |
| 283-452, gnl|dasNov1|scaffold_131941 (1665-1820) | |
| 283-452, gnl|echTel1|scaffold_249065 (5193-5001) | |
| 283-452, gnl|fr1|chrUn (75285098-75285274) | |
| 283-452, gnl|galGal2|chr32 (198212-198380) | |
| 283-452, gnl|hg17|chr1 (199709427-199709616) | |
| 283-452, gnl|Hg17|chr1 (199709426-199709595) | |
| 283-452, gnl|loxAfr1|scaffold_14685 (62017-61829) | |
| 283-452, gnl|mm7|chr1 (134250712-134250525) | |
| 283-452, gnl|Mm7|chr1 (134250711-134250542) | |
| 283-452, gnl|monDom2|scaffold_13 (2979604-2979767) | |
| 283-452, gnl|oryCun1|scaffold_205886 (47982-48139) | |
| 283-452, gnl|panTro1|chr1 (182561728-182561917) | |
| 283-452, gnl|rheMac2|chr1 (167432537-167432348) | |
| 283-452, gnl|rn3|chr13 (47331547-47331360) | |
| 283-452, gnl|tetNig1|chr11 (8623779-8623969) | |
| 283-452, gnl|xenTro1|scaffold_143 (1430321-1430496) | |
| 611-793, gnl|bosTau2|chr16 (56639-56821) | |
| 611-793, gnl|canFam2|chr7 (3169391-3169257) | |
| 611-793, gnl|danRer3|chr11 (21906958-21907081) | |
| 611-793, gnl|dasNov1|scaffold_256297 (3054-3188) | |
| 611-793, gnl|echTel1|scaffold_319018 (43635-43501) | |
| 611-793, gnl|fr1|chrUn (75285771-75285890) | |
| 611-793, gnl|galGal2|chr32 (201027-201154) | |
| 611-793, gnl|hg17|chr1 (199716733-199716867) | |
| 611-793, gnl|Hg17|chr1 (199716743-199716925) | |
| 611-793, gnl|loxAfr1|scaffold_14685 (56981-56847) | |
| 611-793, gnl|mm7|chr1 (134244640-134244506) | |
| 611-793, gnl|Mm7|chr1 (134244628-134244446) | |
| 611-793, gnl|monDom2|scaffold_13 (2989813-2989947) | |
| 611-793, gnl|oryCun1|scaffold_191194 (8173-8307) | |
| 611-793, gnl|panTro1|chr1 (182569040-182569174) | |
| 611-793, gnl|rheMac2|chr1 (167424517-167424383) | |
| 611-793, gnl|rn3|chr13 (47324697-47324563) | |
| 611-793, gnl|tetNig1|chr11 (8624256-8624383) | |
| 611-793, gnl|xenTro1|scaffold_143 (1433646-1433780) | |
| 872-1030, gnl|bosTau2|chr16 (60353-60511) | |
| 872-1030, gnl|canFam2|chr7 (3164500-3164318) | |
| 872-1030, gnl|danRer3|chr11 (21907390-21907570) | |
| 872-1030, gnl|dasNov1|scaffold_16732 (38849-39040) | |
| 872-1030, gnl|echTel1|scaffold_319018 (37211-37020) | |
| 872-1030, gnl|fr1|chrUn (75286226-75286395) | |
| 872-1030, gnl|galGal2|chr32 (205156-205340) | |
| 872-1030, gnl|hg17|chr1 (199721576-199721769) | |
| 872-1030, gnl|Hg17|chr1 (199721575-199721733) | |
| 872-1030, gnl|loxAfr1|scaffold_2327 (111568-111725) | |
| 872-1030, gnl|mm7|chr1 (134240027-134239853) | |
| 872-1030, gnl|Mm7|chr1 (134240026-134239868) | |
| 872-1030, gnl|monDom2|scaffold_13 (2996547-2996730) | |
| 872-1030, gnl|oryCun1|scaffold_10239 (2596-2779) | |
| 872-1030, gnl|panTro1|chr1 (182573893-182574085) | |
| 872-1030, gnl|rheMac2|chr1 (167419672-167419480) | |
| 872-1030, gnl|rn3|chr13 (47319810-47319638) | |
| 872-1030, gnl|tetNig1|chr11 (8624762-8624911) | |
| 872-1030, gnl|xenTro1|scaffold_143 (1436791-1436955) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-194, gnl|bosTau2|chr16 (47260-47452) | |
| 3-194, gnl|Hg17|chr1 (199708166-199708359) | |
| 3-194, gnl|Mm7|chr1 (134251739-134251547) | |
| 283-452, gnl|bosTau2|chr16 (48548-48717) | |
| 283-452, gnl|canFam2|chr7 (3174530-3174348) | |
| 283-452, gnl|danRer3|chr11 (21904183-21904352) | |
| 283-452, gnl|dasNov1|scaffold_131941 (1665-1820) | |
| 283-452, gnl|echTel1|scaffold_249065 (5193-5001) | |
| 283-452, gnl|fr1|chrUn (75285098-75285274) | |
| 283-452, gnl|galGal2|chr32 (198212-198380) | |
| 283-452, gnl|hg17|chr1 (199709427-199709616) | |
| 283-452, gnl|Hg17|chr1 (199709426-199709595) | |
| 283-452, gnl|loxAfr1|scaffold_14685 (62017-61829) | |
| 283-452, gnl|mm7|chr1 (134250712-134250525) | |
| 283-452, gnl|Mm7|chr1 (134250711-134250542) | |
| 283-452, gnl|monDom2|scaffold_13 (2979604-2979767) | |
| 283-452, gnl|oryCun1|scaffold_205886 (47982-48139) | |
| 283-452, gnl|panTro1|chr1 (182561728-182561917) | |
| 283-452, gnl|rheMac2|chr1 (167432537-167432348) | |
| 283-452, gnl|rn3|chr13 (47331547-47331360) | |
| 283-452, gnl|tetNig1|chr11 (8623779-8623969) | |
| 283-452, gnl|xenTro1|scaffold_143 (1430321-1430496) | |
| 611-793, gnl|bosTau2|chr16 (56639-56821) | |
| 611-793, gnl|canFam2|chr7 (3169391-3169257) | |
| 611-793, gnl|danRer3|chr11 (21906958-21907081) | |
| 611-793, gnl|dasNov1|scaffold_256297 (3054-3188) | |
| 611-793, gnl|echTel1|scaffold_319018 (43635-43501) | |
| 611-793, gnl|fr1|chrUn (75285771-75285890) | |
| 611-793, gnl|galGal2|chr32 (201027-201154) | |
| 611-793, gnl|hg17|chr1 (199716733-199716867) | |
| 611-793, gnl|Hg17|chr1 (199716743-199716925) | |
| 611-793, gnl|loxAfr1|scaffold_14685 (56981-56847) | |
| 611-793, gnl|mm7|chr1 (134244640-134244506) | |
| 611-793, gnl|Mm7|chr1 (134244628-134244446) | |
| 611-793, gnl|monDom2|scaffold_13 (2989813-2989947) | |
| 611-793, gnl|oryCun1|scaffold_191194 (8173-8307) | |
| 611-793, gnl|panTro1|chr1 (182569040-182569174) | |
| 611-793, gnl|rheMac2|chr1 (167424517-167424383) | |
| 611-793, gnl|rn3|chr13 (47324697-47324563) | |
| 611-793, gnl|tetNig1|chr11 (8624256-8624383) | |
| 611-793, gnl|xenTro1|scaffold_143 (1433646-1433780) | |
| 872-1030, gnl|bosTau2|chr16 (60353-60511) | |
| 872-1030, gnl|canFam2|chr7 (3164500-3164318) | |
| 872-1030, gnl|danRer3|chr11 (21907390-21907570) | |
| 872-1030, gnl|dasNov1|scaffold_16732 (38849-39040) | |
| 872-1030, gnl|echTel1|scaffold_319018 (37211-37020) | |
| 872-1030, gnl|fr1|chrUn (75286226-75286395) | |
| 872-1030, gnl|galGal2|chr32 (205156-205340) | |
| 872-1030, gnl|hg17|chr1 (199721576-199721769) | |
| 872-1030, gnl|Hg17|chr1 (199721575-199721733) | |
| 872-1030, gnl|loxAfr1|scaffold_2327 (111568-111725) | |
| 872-1030, gnl|mm7|chr1 (134240027-134239853) | |
| 872-1030, gnl|Mm7|chr1 (134240026-134239868) | |
| 872-1030, gnl|monDom2|scaffold_13 (2996547-2996730) | |
| 872-1030, gnl|oryCun1|scaffold_10239 (2596-2779) | |
| 872-1030, gnl|panTro1|chr1 (182573893-182574085) | |
| 872-1030, gnl|rheMac2|chr1 (167419672-167419480) | |
| 872-1030, gnl|rn3|chr13 (47319810-47319638) | |
| 872-1030, gnl|tetNig1|chr11 (8624762-8624911) | |
| 872-1030, gnl|xenTro1|scaffold_143 (1436791-1436955) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cty (0.31224) | |
| jej (0.296765) | |
| cbl (0.229595) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nje (0.16592) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| jej (0.296765) | |
| cbl (0.229595) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nje (0.16592) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ecc (0.115035) |