Ss1.1-Pig4-TMW8026I14.5.5
|
GTCGGGGCGGGTGCCGAGCCAGGCGGTCGGGTGAGCAGGACTTTGCTCAGCGGGTTGCAA
AGGATCAAGCCGGCCTTGTGGAGCATAAGAGCGTAGAGATTTGGAAGAGGGTGGTTCCTA
AGGGAAGATCTGCCCCTGCCACGAAACCCCCAGGGACGAGGTTGGAGGTCCCAATGGCTG
CCAAATCCCAGCCCGGCACTCCTAAAACCAAGAGTCTTGGCAGTGTCAGCAATGGCAGTG
CTGCCACTCAGGGGCAGTGGGGCCGTGCCTGGGAGGTGGACTGGTTTTCCCTGGCGAGCG
TCATCTTCCTGCTGCTGTGCGCCCCCTTCATCGTCTACTACTTCATCATGGCCTGCGACC
AGTACGGCTGCTCCCTGACCGCCCCCCTGGGCGACATCGCCACCGGGCGGGCGCGACTCT
CCGACATCTGGGCCAAGACGCCACCTGTGACGAGGACCGCGGCCCAGCTCTACACGGCGT
GGGTCACATTCCAGGTGCTTCTGTACATGCTGCTCCCTGACTTCTGCCATAAGTTTCTGC
CGGGCTACGTGGGCGGCGTGCAGGAGGGCGCCGTGACTCCCGCAGGAGTGGTCAACAAGT
ATCAGATCAACGGCCTGCAGGCCTGGCTCATCACCCACCTGCTGTGGTTCGCTAACTCCC
ACGTCCTCTCCTGGTTCTCCCCCACCATCATCTTCGACAACTGGATCCCGCTGCTGTGGT
GCGCCAACATCCTGGGCTACGCCGTCTCCACCTTCGCCATGATCAAGGGCTACTGCTTCC
CCACCGATGCCCGAGACTGCAAGTTCACGGGCAACTTCTTTTACAACTACATGATGGGTA
TTGAGTTCAACCCCCGAATCGGGAAGTGGTTTGACTTCAAGCTCTTCTTCAACGGGCGCC
CCGGGATCGTCGCCTGGACCCTCATCAACCTGTCCTTCGCGGCCAAGCAGCAGCAGCTCT
ACGGCCACGTCACCAACTCCATGGTCTTGGTCAACATCCTGCAGGCCATCTACGTGCTGG
ACTTCTTCTGGAACGAGACCTGGTACCTGAAAACCATTGACATCTGCCACGACCACTTCG
GGTGGTACCTGGGCTGGGGGGACTGCGTCTGGCTGCCGTACCTCTATACGCTGCAGGGTC
TGTACCTGGTTTACCACCCCGTGCAGCTGTCCACCCCCTACGCCGTGGGCGTCCTGCTGC
TGGGCCTGCTGGGCTACTACGTCTTCCGGATGGCCAACCATCAGAAGGACCTGTTTCGGC
GCACGGACGGGCGCTGCCTGATCTGGGGCCGGAAGCCCCAGGTCATCGAGTGTTCCTACA
CGTCGGCCGACGGCCAGAAGCACCACAGCAAGCTGCTGGTGTCCGGCTTCTGGGGCGTGG
CCCGCCACTTCAACTACACGGGCGACCTGCTGGGCAGCCTGGCGTACTGCCTGGCCTGTG
GCGGCGGCCACCTGCTGCCCTACTTCTACATCATCTACATGGGCATCCTGCTGACCCACC
GCTGCCTGCGGGACGAACACCGCTGTGCCAACAAGTACGGCCGGGACTGGGAGCGCTACA
CGGCCGCCGTGCCTTACCGCCTGCTGCCCGGCGTCTTCTGAAGGGCCGGATGGAGGCGCC
CCGGGGCTGGGGCTGCTGGGGGCCTCCCGGCTCCGTCCTCCAGGAGCCTCAGTGTCCTTC
CTCTGCCACGGGGAGAGCCCAGCCCTGGTCCTGAGGGTCCAGACACCACTGCCTTGTCAC
CAGCAGAAGGGACCGGTTTTCTGCGCCGTGTCCCCCGCGCGGGACGGTGGCCCGGTCCCC
TCGGATGGCCCGGTGGGCCTGGCATGACACTGACTTCTTCTCTGTCTGGGGGCCTGAGCC
CTCCGCCACCCGGACAGCAGGTGTCTCACGGAAGGGGACGCCCGCCAGCCCCAGGTCAGT
CCTGTCCTGGCCTCTTGCTGAATAAAGTGGAGGTGGGCACACGAAAAAAAAAAAAAAAAA
GTTGACTGCCTTTCAGCTCCAGACACCCTCTGCCTCGCTCCTCCGCGTGGGCGCGCGCGC
TTCTGCCAGCAGAGGGCCCCGAGGGACACGGTGCGAGGACGGGGAGGCTCCCGGGCCTGG
CTCTTCCACAGCCTCTGCCAGGAAACCCAGGGAAAGTGGCCACCGTCCAGGGGCCGCACC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCGGGGCGGGTGCCGAGCCAGGCGGTCGGGTGAGCAGGACTTTGCTCAGCGGGTTGCAA
AGGATCAAGCCGGCCTTGTGGAGCATAAGAGCGTAGAGATTTGGAAGAGGGTGGTTCCTA
AGGGAAGATCTGCCCCTGCCACGAAACCCCCAGGGACGAGGTTGGAGGTCCCAATGGCTG
CCAAATCCCAGCCCGGCACTCCTAAAACCAAGAGTCTTGGCAGTGTCAGCAATGGCAGTG
CTGCCACTCAGGGGCAGTGGGGCCGTGCCTGGGAGGTGGACTGGTTTTCCCTGGCGAGCG
TCATCTTCCTGCTGCTGTGCGCCCCCTTCATCGTCTACTACTTCATCATGGCCTGCGACC
AGTACGGCTGCTCCCTGACCGCCCCCCTGGGCGACATCGCCACCGGGCGGGCGCGACTCT
CCGACATCTGGGCCAAGACGCCACCTGTGACGAGGACCGCGGCCCAGCTCTACACGGCGT
GGGTCACATTCCAGGTGCTTCTGTACATGCTGCTCCCTGACTTCTGCCATAAGTTTCTGC
CGGGCTACGTGGGCGGCGTGCAGGAGGGCGCCGTGACTCCCGCAGGAGTGGTCAACAAGT
ATCAGATCAACGGCCTGCAGGCCTGGCTCATCACCCACCTGCTGTGGTTCGCTAACTCCC
ACGTCCTCTCCTGGTTCTCCCCCACCATCATCTTCGACAACTGGATCCCGCTGCTGTGGT
GCGCCAACATCCTGGGCTACGCCGTCTCCACCTTCGCCATGATCAAGGGCTACTGCTTCC
CCACCGATGCCCGAGACTGCAAGTTCACGGGCAACTTCTTTTACAACTACATGATGGGTA
TTGAGTTCAACCCCCGAATCGGGAAGTGGTTTGACTTCAAGCTCTTCTTCAACGGGCGCC
CCGGGATCGTCGCCTGGACCCTCATCAACCTGTCCTTCGCGGCCAAGCAGCAGCAGCTCT
ACGGCCACGTCACCAACTCCATGGTCTTGGTCAACATCCTGCAGGCCATCTACGTGCTGG
ACTTCTTCTGGAACGAGACCTGGTACCTGAAAACCATTGACATCTGCCACGACCACTTCG
GGTGGTACCTGGGCTGGGGGGACTGCGTCTGGCTGCCGTACCTCTATACGCTGCAGGGTC
TGTACCTGGTTTACCACCCCGTGCAGCTGTCCACCCCCTACGCCGTGGGCGTCCTGCTGC
TGGGCCTGCTGGGCTACTACGTCTTCCGGATGGCCAACCATCAGAAGGACCTGTTTCGGC
GCACGGACGGGCGCTGCCTGATCTGGGGCCGGAAGCCCCAGGTCATCGAGTGTTCCTACA
CGTCGGCCGACGGCCAGAAGCACCACAGCAAGCTGCTGGTGTCCGGCTTCTGGGGCGTGG
CCCGCCACTTCAACTACACGGGCGACCTGCTGGGCAGCCTGGCGTACTGCCTGGCCTGTG
GCGGCGGCCACCTGCTGCCCTACTTCTACATCATCTACATGGGCATCCTGCTGACCCACC
GCTGCCTGCGGGACGAACACCGCTGTGCCAACAAGTACGGCCGGGACTGGGAGCGCTACA
CGGCCGCCGTGCCTTACCGCCTGCTGCCCGGCGTCTTCTGAAGGGCCGGATGGAGGCGCC
CCGGGGCTGGGGCTGCTGGGGGCCTCCCGGCTCCGTCCTCCAGGAGCCTCAGTGTCCTTC
CTCTGCCACGGGGAGAGCCCAGCCCTGGTCCTGAGGGTCCAGACACCACTGCCTTGTCAC
CAGCAGAAGGGACCGGTTTTCTGCGCCGTGTCCCCCGCGCGGGACGGTGGCCCGGTCCCC
TCGGATGGCCCGGTGGGCCTGGCATGACACTGACTTCTTCTCTGTCTGGGGGCCTGAGCC
CTCCGCCACCCGGACAGCAGGTGTCTCACGGAAGGGGACGCCCGCCAGCCCCAGGTCAGT
CCTGTCCTGGCCTCTTGCTGAATAAAGTGGAGGTGGGCACACGAAAAAAAAAAAAAAAAA
GTTGACTGCCTTTCAGCTCCAGACACCCTCTGCCTCGCTCCTCCGCGTGGGCGCGCGCGC
TTCTGCCAGCAGAGGGCCCCGAGGGACACGGTGCGAGGACGGGGAGGCTCCCGGGCCTGG
CTCTTCCACAGCCTCTGCCAGGAAACCCAGGGAAAGTGGCCACCGTCCAGGGGCCGCACC |
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gi|62460550|ref|NP_001014927.1| |
Protein identifier
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gi|62460550|ref|NP_001014927.1| |
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271-497, gnl|bosTau2|chr29 (43038720-43038494) |
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271-497, gnl|canFam2|chr18 (50288701-50288437) |
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271-497, gnl|danRer3|chr22 (33873006-33872774) |
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271-497, gnl|dasNov1|scaffold_230663 (3912-3653) |
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271-497, gnl|fr1|chrUn (289247616-289247887) |
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271-497, gnl|galGal2|chr5 (1788620-1788861) |
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271-497, gnl|hg17|chr11 (70832682-70832945) |
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271-497, gnl|Hg17|chr11 (70832910-70832684) |
|
271-497, gnl|loxAfr1|scaffold_38353 (10713-10449) |
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271-497, gnl|mm7|chr7 (140265271-140265008) |
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271-497, gnl|Mm7|chr7 (140265041-140265267) |
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271-497, gnl|panTro1|chr9 (72088212-72088463) |
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271-497, gnl|rheMac2|chr14 (3470786-3470523) |
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271-497, gnl|rn3|chr1 (204403774-204403514) |
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271-497, gnl|tetNig1|chrUn_random (15527825-15527594) |
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271-497, gnl|xenTro1|scaffold_5455 (4324-4570) |
| |
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799-1005, gnl|bosTau2|chr29 (43034209-43034003) |
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799-1005, gnl|Hg17|chr11 (70827778-70827572) |
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799-1005, gnl|Mm7|chr7 (140270393-140270599) |
| |
|
1134-1766, gnl|bosTau2|chr29 (43029801-43029161) |
|
1134-1766, gnl|Hg17|chr11 (70824536-70823823) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
271-497, gnl|bosTau2|chr29 (43038720-43038494) |
|
271-497, gnl|canFam2|chr18 (50288701-50288437) |
|
271-497, gnl|danRer3|chr22 (33873006-33872774) |
|
271-497, gnl|dasNov1|scaffold_230663 (3912-3653) |
|
271-497, gnl|fr1|chrUn (289247616-289247887) |
|
271-497, gnl|galGal2|chr5 (1788620-1788861) |
|
271-497, gnl|hg17|chr11 (70832682-70832945) |
|
271-497, gnl|Hg17|chr11 (70832910-70832684) |
|
271-497, gnl|loxAfr1|scaffold_38353 (10713-10449) |
|
271-497, gnl|mm7|chr7 (140265271-140265008) |
|
271-497, gnl|Mm7|chr7 (140265041-140265267) |
|
271-497, gnl|panTro1|chr9 (72088212-72088463) |
|
271-497, gnl|rheMac2|chr14 (3470786-3470523) |
|
271-497, gnl|rn3|chr1 (204403774-204403514) |
|
271-497, gnl|tetNig1|chrUn_random (15527825-15527594) |
|
271-497, gnl|xenTro1|scaffold_5455 (4324-4570) |
| |
|
799-1005, gnl|bosTau2|chr29 (43034209-43034003) |
|
799-1005, gnl|Hg17|chr11 (70827778-70827572) |
|
799-1005, gnl|Mm7|chr7 (140270393-140270599) |
| |
|
1134-1766, gnl|bosTau2|chr29 (43029801-43029161) |
|
1134-1766, gnl|Hg17|chr11 (70824536-70823823) |
|
nep (0.36785) |
|
cga (0.279096) |
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fli (0.202881) |
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duo (0.172801) |
|
cli (0.152812) |
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hyp (0.142837) |
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pla (0.133672) |
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nmm (0.132802) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
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ebs (0.118301) |
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jej (0.0989218) |
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nep (0.36785) |
|
cga (0.279096) |
|
fli (0.202881) |
|
duo (0.172801) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ese (0.126502) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
jej (0.0989218) |
