Non-Coding RNA Search

Ss1.1-Pig4-TMW8026I15.3

Sequence:


               
               TAGAGGACGTTGTCAGGTTGTAGGGCTTCGGCCGGGGGGGACTAGTGCGTCTCCGTTATT
TTGAGTGGGAGGAGCTTTCCCCGGGGTGGCAGCTGCCCCCGGGGCGAAGCCTGGGTAATG
GCTGGTGAGGCAGCTGGGAGTGGGCGCTGCTGTTTGCACCGCTGCAGACATCTCTCCTGC
TGCAATACCAACCTCAGCAACCAGACGACGGGCTCCTGCAGCTGCTCACGTTACCCGGGA
GGAGGGGTGGTGCGAAGGAGGGCATATTGCTGGTGCCCTCTAGAGTTCCATGGTGGGAAC
TGAGGTTGTTTCCTTTCTGATGCTGTGTGTGCAACCATCTTTAACACTTTTCTTCCATTA
CAATGGATAATCGATTGAAGGGATTGGAGAAACATCCATATTTAACTCTTGCTGTGTGAC
ATAACAAACACGTTTTGACTCTTGGGGTTCATGCGGTGGTAGATCTCTTTCATGTGTTTG
CTTAAGAAAGGGCATGAGTCTACTCCAGTTCTCAGTTTACTGGTGTCTGATCAGAGCAGT
CCACTGCTCTGGTTACTTAGTCCTTCATCTTTTGTGATGCTTAGTCTTCACTTGAGTTAC
TCTTGAACGTGTTACTGAGAGTTCTCTTCTAATGCTTGCAGTTTTTTGGTTTTAAGGCGG
TCTTGTACTGTGGGAGACAGTAAAATAAACATAACCAGGCATTTCCGGTCAATTGAAATT
AGTTACAAAATATCAGTGAAGTTAGCATTCTGGATAGATACATTGTATCTCTGGAGCTCA
CTGACAGTTGATATCCTAACTTGTAGATCTCTGTCAGAGGTGAGTCATCCGCATAGTAGC
TTATGCCTGAATATTAAGTCCCAGTGGGTCAAAAGGTAATGGCTGATGAGTGTATGCTGA
ATACTGACTGAAGGAAGAAGCCAGGGTGGCAACTTGTACTAAACCAACGCGACTTTAGGC
AGGTGCTGGGCACTTCCACCTATTATTTACTTGAATCTTGGCAGATAGCCTGCAGCATGT
ATTGAGCCCCTATTGTGTGCCAGCACAATACTAAATTAAATTTTTTTTTAAGTTAATGAT
GGAAACTTTCAAATTTATGAACGAGAATAGTATTTTGAACTTCTCTGTGCCTGTCGTTTG
CATTGTGTAATTTTTAGCACGTCCAGACTAATTTAAGCATGTATTAAGTAATTTAATCCT
TACGGAAACCCAGTGTTTTTATTCCTGATTTGTAGGGGAGGAAACGGGCGTAGGCAAACA
CCCAGGTAGGAGTATTTGGTAAAGCAAGGATTGGAACCGAACCAGTTTGATTACAGGTCT
AAGTTCAGCAAATGTGTTGTCCTGTTCTAGAGCATATATTTGTTCTACAAGTTTAGAAAT
TGAAACAGTGAAAAAATTCGAAGGTTACAATGGCCTGTCTGTGTTCTTTTCCTAGAAAAC
AGTGGGTAAACAAATAGAAAATGTTTATATCTCATTGAGTACCTTTTAAAAAATGGTTGT
GAAGTTCCCTGATGGCTCACCTGGTTAAGGATCCTCTGTGGCCACTGATGTGGCACAGGT
TCAATCCCTGCCCGGGAACTTCATGTGCTACGGGTGTGGCCCACCCTCCTCCCACCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGGACGTTGTCAGGTTGTAGGGCTTCGGCCGGGGGGGACTAGTGCGTCTCCGTTATT
TTGAGTGGGAGGAGCTTTCCCCGGGGTGGCAGCTGCCCCCGGGGCGAAGCCTGGGTAATG
GCTGGTGAGGCAGCTGGGAGTGGGCGCTGCTGTTTGCACCGCTGCAGACATCTCTCCTGC
TGCAATACCAACCTCAGCAACCAGACGACGGGCTCCTGCAGCTGCTCACGTTACCCGGGA
GGAGGGGTGGTGCGAAGGAGGGCATATTGCTGGTGCCCTCTAGAGTTCCATGGTGGGAAC
TGAGGTTGTTTCCTTTCTGATGCTGTGTGTGCAACCATCTTTAACACTTTTCTTCCATTA
CAATGGATAATCGATTGAAGGGATTGGAGAAACATCCATATTTAACTCTTGCTGTGTGAC
ATAACAAACACGTTTTGACTCTTGGGGTTCATGCGGTGGTAGATCTCTTTCATGTGTTTG
CTTAAGAAAGGGCATGAGTCTACTCCAGTTCTCAGTTTACTGGTGTCTGATCAGAGCAGT
CCACTGCTCTGGTTACTTAGTCCTTCATCTTTTGTGATGCTTAGTCTTCACTTGAGTTAC
TCTTGAACGTGTTACTGAGAGTTCTCTTCTAATGCTTGCAGTTTTTTGGTTTTAAGGCGG
TCTTGTACTGTGGGAGACAGTAAAATAAACATAACCAGGCATTTCCGGTCAATTGAAATT
AGTTACAAAATATCAGTGAAGTTAGCATTCTGGATAGATACATTGTATCTCTGGAGCTCA
CTGACAGTTGATATCCTAACTTGTAGATCTCTGTCAGAGGTGAGTCATCCGCATAGTAGC
TTATGCCTGAATATTAAGTCCCAGTGGGTCAAAAGGTAATGGCTGATGAGTGTATGCTGA
ATACTGACTGAAGGAAGAAGCCAGGGTGGCAACTTGTACTAAACCAACGCGACTTTAGGC
AGGTGCTGGGCACTTCCACCTATTATTTACTTGAATCTTGGCAGATAGCCTGCAGCATGT
ATTGAGCCCCTATTGTGTGCCAGCACAATACTAAATTAAATTTTTTTTTAAGTTAATGAT
GGAAACTTTCAAATTTATGAACGAGAATAGTATTTTGAACTTCTCTGTGCCTGTCGTTTG
CATTGTGTAATTTTTAGCACGTCCAGACTAATTTAAGCATGTATTAAGTAATTTAATCCT
TACGGAAACCCAGTGTTTTTATTCCTGATTTGTAGGGGAGGAAACGGGCGTAGGCAAACA
CCCAGGTAGGAGTATTTGGTAAAGCAAGGATTGGAACCGAACCAGTTTGATTACAGGTCT
AAGTTCAGCAAATGTGTTGTCCTGTTCTAGAGCATATATTTGTTCTACAAGTTTAGAAAT
TGAAACAGTGAAAAAATTCGAAGGTTACAATGGCCTGTCTGTGTTCTTTTCCTAGAAAAC
AGTGGGTAAACAAATAGAAAATGTTTATATCTCATTGAGTACCTTTTAAAAAATGGTTGT
GAAGTTCCCTGATGGCTCACCTGGTTAAGGATCCTCTGTGGCCACTGATGTGGCACAGGT
TCAATCCCTGCCCGGGAACTTCATGTGCTACGGGTGTGGCCCACCCTCCTCCCACCCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-233, - strand, RNAz p=0.98439
               

               
               1182-1349, - strand, RNAz p=0.865187

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-233, - strand, RNAz p=0.98439
               

               
               1182-1349, - strand, RNAz p=0.865187

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               109-222, + strand, RNAmicro p=0.995081

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               109-222, + strand, RNAmicro p=0.995081

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1349, gnl|bosTau2|chr12 (20643448-20644806)
               

               
               1-1349, gnl|Hg17|chr13 (19432197-19433425)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1349, gnl|bosTau2|chr12 (20643448-20644806)
               

               
               1-1349, gnl|Hg17|chr13 (19432197-19433425)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               tra (0.123092)

	1-233, - strand, RNAz p=0.98439
	1182-1349, - strand, RNAz p=0.865187

	1-1349, gnl\|bosTau2\|chr12 (20643448-20644806)
	1-1349, gnl\|Hg17\|chr13 (19432197-19433425)