Non-Coding RNA Search

Ss1.1-Pig4-TMW8026I16.3

Sequence:


               
               CTTTGCAGTTGCCAAAAGTCACTATCCACATGGAACTGTAAATGCATATGCATGATTTCC
TAAACTGTTTTAGAATTCTCCTTAACAATCTCAACTCCCGTATTTTTCCCCGTTCCCTGG
TGCCACATGCTGACAACTGCAGTCTTCAGTTTAGAATATTCCATAGTGGTGGCATGTCAG
CTGCCCACTTGATATTCCATTGCAAAATGGTGCGCTGTGGATCAAGACACTTTGGTATGA
CACACACACACGTTGGAAGACTTTAAAGAGGTACAGTCTGACCTGAGCCTCCATCATTGT
CCTCCACAAACATATTTTCATACTCTTTATGTGGAAGAATAGATTTTAAAGTTACAAGCC
AAATGATTTTCATTGGTGGAACTGACACACACAAAAAAGTAACTTAAAAAAAGAAACTTG
GTTATTGATTAAACAGATAAGTTTTAAAAAACTATACTTCATCTACCAGTAATTGATGTG
TTTATTATCTGCCTCAGAAGCCAGGGTTGGAGGAAGAACTTTAGCTATGGATGGTAAAGC
TTTCGCCATTATACCTAATTTTTGAGAACAGCAAGCCCTATTTGACCACTCACTTCAGCC
TGTGTGTTCCTGCTGTTTTGAAGTAATCAAATGCTGTGCATGGTATTTTACCTGAGCTGC
AACCTGTTACGGACTTGAACTTCTGTTTAAGTTGAAAGCAAGAGTCCCTTATAAAGAAAA
AAACAAGAACAAAAATTATAAAAGTCTGAAGTACCCATTGATGATATTTAAAAAGAAAAT
CTTGCTTTCAGCTTTCAGGAGTTAATATTTTTTGTTTTAAATTGATAATTGGATATGGTT
GATTTATATTGGGTTTAAACTGTGGAGCTTTCATGTTTACTGTAATTTAGTCTTAAAATA
TTTTTTACTTAGTAACCAGTGCTTTTGATAATGTGGTTGGCAACAAACCAGCAACTATTT
AGAAGTGTCATAAAACTTCATTCTTTGAGTATGGGAAAGTTCAGTCAGATCCTATTCTAA
AAGCATATTCACATATAAAAAGATTCAGACAAGGATCTGCATGGAGGAATAATCTGCAGT
TATTTAACATAAACCTGATTTGCAGTGATCTTTAATTCTGCAAAATCTGGTATTACTGTG
TAAAGTTACTGCTTTTGGTAAATTGTCTGACCCAGTTATTAATGAAAGGATATGGATTTG
AAAATTTTTAAACTGAATAATTTGTGCTGTCACAGAAATGGTTTTGTTGCTCTTGTTTAC
TGGGTATGGTTTCCCAATGCATTGATGTGAAAGGATAGAAATCTAAACTAACTTAGTTAC
CCAATGGGGGGGTGTACTTACTGTGAGGAAGATGAGACAGATGCCATCAGAGCTTTGTGA
ATCAGCGGGGGTATTTTCACTGATAAACAACATATAGCAGGTGTGCATTCATTACAAATC
TATGTATCTGCCAAGGTGGAGCCACTTTAAAGAGTGAGTTTTGTCTTGTATCTCAAGTGG
ATACAAGCGTATGTTTAAACTGCAAGATTTTTACTTGCTAGAGAATCTGTTTTAATATAG
TGGTTTGGCCTCTGATTATTTATAGGTTTTATAAATTTTAGAATCAATTTCTCTTTAAGG
TGGCTCAGACTTTTCAACTCTTGTGCACATAAAATTGAGTTGAAGTTCATTGTGCCTTTT
TTTCTTTATCCAGATTTTGAGTTAAAGCTTCATATGGTAACTGCATCCTGTTCAGACATT
TTAGTCTAAATTTTTGAAACTGTGTGGTGTTCACTAAAAGTAGGAATGACAGAGTCAAAG
CCAAGTAAGGTCACAAACTTCGGTGAAACCCTTAAAGTCCAAATCTTCTTACTATTGTGA
ACTGTACCCCTTCCAGTTTAGTTTCTTCTTGACTCCCCATACTTACAGTTACCTTTTAAA
TTTTGCACACATCAAGATTAAATTGGGCCTCTACTGTGCCGATTCCTATTTCCTCCTGTG
TTTTAAGTGCAAACTAACAGAAGTGAACATTAGCATCAAGTAGTGCAGACCTACGTGTGC
ATTTGCTTGATTCAGTTTGTTGTGACCTTACCAGTTTGGAATTGGAATTGCACCATTTCA
TAGATAAAGGAAACTAAGTATATTGCTGCACTTTTAAGTTTTCAAAACAGTGTTGAAAAA
CTGCATTGTTTTTATTTTTTTTAAACTCAGTTAAAAAAAGACTAAAACGTTCTTTCAAAA
GAGGCATCTAAATGTGTTCCTAATTTTGTATATGGGCTTAGGTTTTGTAACCAATAAAAA
AAAAAAGCTGCTATCAAATATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCAGTTGCCAAAAGTCACTATCCACATGGAACTGTAAATGCATATGCATGATTTCC
TAAACTGTTTTAGAATTCTCCTTAACAATCTCAACTCCCGTATTTTTCCCCGTTCCCTGG
TGCCACATGCTGACAACTGCAGTCTTCAGTTTAGAATATTCCATAGTGGTGGCATGTCAG
CTGCCCACTTGATATTCCATTGCAAAATGGTGCGCTGTGGATCAAGACACTTTGGTATGA
CACACACACACGTTGGAAGACTTTAAAGAGGTACAGTCTGACCTGAGCCTCCATCATTGT
CCTCCACAAACATATTTTCATACTCTTTATGTGGAAGAATAGATTTTAAAGTTACAAGCC
AAATGATTTTCATTGGTGGAACTGACACACACAAAAAAGTAACTTAAAAAAAGAAACTTG
GTTATTGATTAAACAGATAAGTTTTAAAAAACTATACTTCATCTACCAGTAATTGATGTG
TTTATTATCTGCCTCAGAAGCCAGGGTTGGAGGAAGAACTTTAGCTATGGATGGTAAAGC
TTTCGCCATTATACCTAATTTTTGAGAACAGCAAGCCCTATTTGACCACTCACTTCAGCC
TGTGTGTTCCTGCTGTTTTGAAGTAATCAAATGCTGTGCATGGTATTTTACCTGAGCTGC
AACCTGTTACGGACTTGAACTTCTGTTTAAGTTGAAAGCAAGAGTCCCTTATAAAGAAAA
AAACAAGAACAAAAATTATAAAAGTCTGAAGTACCCATTGATGATATTTAAAAAGAAAAT
CTTGCTTTCAGCTTTCAGGAGTTAATATTTTTTGTTTTAAATTGATAATTGGATATGGTT
GATTTATATTGGGTTTAAACTGTGGAGCTTTCATGTTTACTGTAATTTAGTCTTAAAATA
TTTTTTACTTAGTAACCAGTGCTTTTGATAATGTGGTTGGCAACAAACCAGCAACTATTT
AGAAGTGTCATAAAACTTCATTCTTTGAGTATGGGAAAGTTCAGTCAGATCCTATTCTAA
AAGCATATTCACATATAAAAAGATTCAGACAAGGATCTGCATGGAGGAATAATCTGCAGT
TATTTAACATAAACCTGATTTGCAGTGATCTTTAATTCTGCAAAATCTGGTATTACTGTG
TAAAGTTACTGCTTTTGGTAAATTGTCTGACCCAGTTATTAATGAAAGGATATGGATTTG
AAAATTTTTAAACTGAATAATTTGTGCTGTCACAGAAATGGTTTTGTTGCTCTTGTTTAC
TGGGTATGGTTTCCCAATGCATTGATGTGAAAGGATAGAAATCTAAACTAACTTAGTTAC
CCAATGGGGGGGTGTACTTACTGTGAGGAAGATGAGACAGATGCCATCAGAGCTTTGTGA
ATCAGCGGGGGTATTTTCACTGATAAACAACATATAGCAGGTGTGCATTCATTACAAATC
TATGTATCTGCCAAGGTGGAGCCACTTTAAAGAGTGAGTTTTGTCTTGTATCTCAAGTGG
ATACAAGCGTATGTTTAAACTGCAAGATTTTTACTTGCTAGAGAATCTGTTTTAATATAG
TGGTTTGGCCTCTGATTATTTATAGGTTTTATAAATTTTAGAATCAATTTCTCTTTAAGG
TGGCTCAGACTTTTCAACTCTTGTGCACATAAAATTGAGTTGAAGTTCATTGTGCCTTTT
TTTCTTTATCCAGATTTTGAGTTAAAGCTTCATATGGTAACTGCATCCTGTTCAGACATT
TTAGTCTAAATTTTTGAAACTGTGTGGTGTTCACTAAAAGTAGGAATGACAGAGTCAAAG
CCAAGTAAGGTCACAAACTTCGGTGAAACCCTTAAAGTCCAAATCTTCTTACTATTGTGA
ACTGTACCCCTTCCAGTTTAGTTTCTTCTTGACTCCCCATACTTACAGTTACCTTTTAAA
TTTTGCACACATCAAGATTAAATTGGGCCTCTACTGTGCCGATTCCTATTTCCTCCTGTG
TTTTAAGTGCAAACTAACAGAAGTGAACATTAGCATCAAGTAGTGCAGACCTACGTGTGC
ATTTGCTTGATTCAGTTTGTTGTGACCTTACCAGTTTGGAATTGGAATTGCACCATTTCA
TAGATAAAGGAAACTAAGTATATTGCTGCACTTTTAAGTTTTCAAAACAGTGTTGAAAAA
CTGCATTGTTTTTATTTTTTTTAAACTCAGTTAAAAAAAGACTAAAACGTTCTTTCAAAA
GAGGCATCTAAATGTGTTCCTAATTTTGTATATGGGCTTAGGTTTTGTAACCAATAAAAA
AAAAAAGCTGCTATCAAATATGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2022-2303, gnl|bosTau2|chr11 (62489199-62488928)
               

               
               2022-2303, gnl|Hg17|chr11 (21227831-21227559)
               

               
               2022-2303, gnl|Mm7|chr14 (56231522-56231258)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2022-2303, gnl|bosTau2|chr11 (62489199-62488928)
               

               
               2022-2303, gnl|Hg17|chr11 (21227831-21227559)
               

               
               2022-2303, gnl|Mm7|chr14 (56231522-56231258)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               ste (0.676041)
               

               
               mas (0.42061)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               bla (0.248694)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.676041)
               

               
               mas (0.42061)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               bla (0.248694)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	2022-2303, gnl\|bosTau2\|chr11 (62489199-62488928)
	2022-2303, gnl\|Hg17\|chr11 (21227831-21227559)
	2022-2303, gnl\|Mm7\|chr14 (56231522-56231258)

	ste (0.676041)
	mas (0.42061)
	tbr (0.308356)
	fat (0.294855)
	spl (0.286369)
	bla (0.248694)
	ldo (0.194005)
	fty (0.17584)
	eye (0.170503)
	mga (0.160205)
	ssp (0.13552)
	nmm (0.132802)
	tra (0.123092)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)