Non-Coding RNA Search

Ss1.1-Pig4-TMW8026I19.3

Sequence:


               
               CTTCAAAACAACCAGCAGAAATCTCGCCCGAGCCATGTGTATGAAGAATCTCAAGCTCAC
AATCATCATCATCATCATATCAGTTGTATTCATCTATATTATTGTGTCACCTCTCTGTGG
TGGATTTACATGGCCCAGCTGTGTGAAGAAATAAAAAAGTTATTAACCAAGGATATGAGA
GAACAAGGAGTTAAAAGCAATCTGTGTGATTCAAGCCTTTTAATACTGACAGATGGTGTC
TGCCAGTCTCTTCAACCCTCTTCTTTCTCTTTTTTAAGTCTTGTTCTATGCCTCCAGATT
TATCTTTGTCCTACCAACCATTTTATTCCAGATTGAACTATTGCAGCAGTAGCCTTAAAA
AGGCATTTTGTTTCTTTGGTTTATTAACTAATGTCATCTACTTACAGAAACCTTTTTGTC
GGTAATTGCACAAAGCAAGGTGGAAACCACTTGTCTTATGAGCTGTCTACTAAAGTTATG
CATGACCTTTGTGCAAACGAAAGTTCAAGAGACAGGATTGCTAACATCTCATCTTAATAT
CTTTTGATTTTGAAGGGTTTTAGGTGCTTGAAAACAATATACATGGAGAATTGTTATTAT
TTGGGGAATTGTAAATAAATTGTTGGTGCTGCTTGTTTCTAGGAGCCCAAGCAGGTAAAG
TATTAAACATTTTATCTCAGCCAGATGGGGAACATTTTGCTAGCCTGTTAGAAGCACACA
GAAATTATTCTTGTCTGCCTATTATTCACTTGTAGGAAGAAACTTTTGATCATTTTCAAA
CCTTACAGAGCTTGATATCCTCTATTTTCCCATTGCAGTTGATTTAAGAAGAGGGTGGTT
TAAATGTTATGAAGGTTGTGGATTTTTATATATTCCTTTTCCTTTGGTGGATATTTAAGG
CAATTGTATAGATAATAGAATGGGTAGTGGAGGGAGTAGGGAGGCATATTCCTGTGGCTC
ACCAAAGAAAAAGAAGAGAACCACAGTGGATGTGCTAGCATTTTAGCTGTATGAAGGGAA
ATAGTGTGGGAAATTTTTCCCAGCCTGGGAAAAGCCCAAACTGAATATAGTCAACAGTCA
ACTCCAGGGTTTGGGTTTGACTGGTGTTGAATGAAATAGTTCAAGCATCCTTTCTGGTTT
AATAAGTTCTTTAAACTGCCTAGTTTTGACGAATTCTTTTGTGAAACTTGAGAGTAGACA
GTATGGTAATAGAAACAATACAAGACAGATTTGCTAACATCCATGTAACTGCAGTGTGAC
AAAAAACTGAAGTGTAAGCATACTGCTTTGGCTACTCTGGCATCTGTTAGCTAGTGTGTA
CCTTTGGTGTGTATCTGAAAGGACAACATTTGCTGCCCTAGATCTAATTGCAGTCATTTA
TCAATAAATGCCAGTAAATGGAAATTATATTACATTTGACTATTTTCCCAATGAAAGAAA
AAATTGGTCTATAAAACCTAACCACCTATTTAGCCTAGTAATGTGCCTTGAATATATGTG
TCTCACAGAATCTGGCTCCTGCTATCTGTTCTTCCTTCTAAACCTTTTGATTCATGCTGA
TTCGTTTATTTGACATATATTTTTGACCCATCAGAACTCTTTTCCTGGTGATCATGCGGA
GTGTAAATGTTTTTTCATTCTTCTTCATCAACACTAATGCCTTTTAATTATATCAGCACT
TCCTATTGGTGTTTACATTTGTTCCATGAAAACATTTGGCATTCCTGAATAATAATTTCC
AAATGTTGTTAATCCAAAGAAAAAGACTTAAAGCTTATTTCCCTTTCTTATACACACCTG
AATAAAAATGATGTGCATGTTTTAGGGATAAATTACTAAACACCCCCTTGGTCTATTTAT
GTATAAGAATGCTTTTAAAGCACATATCTTGTTTTAAATGATGCACAAACTGAAGGCATT
AATAAAATGTAAGAGTAATATGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAAAACAACCAGCAGAAATCTCGCCCGAGCCATGTGTATGAAGAATCTCAAGCTCAC
AATCATCATCATCATCATATCAGTTGTATTCATCTATATTATTGTGTCACCTCTCTGTGG
TGGATTTACATGGCCCAGCTGTGTGAAGAAATAAAAAAGTTATTAACCAAGGATATGAGA
GAACAAGGAGTTAAAAGCAATCTGTGTGATTCAAGCCTTTTAATACTGACAGATGGTGTC
TGCCAGTCTCTTCAACCCTCTTCTTTCTCTTTTTTAAGTCTTGTTCTATGCCTCCAGATT
TATCTTTGTCCTACCAACCATTTTATTCCAGATTGAACTATTGCAGCAGTAGCCTTAAAA
AGGCATTTTGTTTCTTTGGTTTATTAACTAATGTCATCTACTTACAGAAACCTTTTTGTC
GGTAATTGCACAAAGCAAGGTGGAAACCACTTGTCTTATGAGCTGTCTACTAAAGTTATG
CATGACCTTTGTGCAAACGAAAGTTCAAGAGACAGGATTGCTAACATCTCATCTTAATAT
CTTTTGATTTTGAAGGGTTTTAGGTGCTTGAAAACAATATACATGGAGAATTGTTATTAT
TTGGGGAATTGTAAATAAATTGTTGGTGCTGCTTGTTTCTAGGAGCCCAAGCAGGTAAAG
TATTAAACATTTTATCTCAGCCAGATGGGGAACATTTTGCTAGCCTGTTAGAAGCACACA
GAAATTATTCTTGTCTGCCTATTATTCACTTGTAGGAAGAAACTTTTGATCATTTTCAAA
CCTTACAGAGCTTGATATCCTCTATTTTCCCATTGCAGTTGATTTAAGAAGAGGGTGGTT
TAAATGTTATGAAGGTTGTGGATTTTTATATATTCCTTTTCCTTTGGTGGATATTTAAGG
CAATTGTATAGATAATAGAATGGGTAGTGGAGGGAGTAGGGAGGCATATTCCTGTGGCTC
ACCAAAGAAAAAGAAGAGAACCACAGTGGATGTGCTAGCATTTTAGCTGTATGAAGGGAA
ATAGTGTGGGAAATTTTTCCCAGCCTGGGAAAAGCCCAAACTGAATATAGTCAACAGTCA
ACTCCAGGGTTTGGGTTTGACTGGTGTTGAATGAAATAGTTCAAGCATCCTTTCTGGTTT
AATAAGTTCTTTAAACTGCCTAGTTTTGACGAATTCTTTTGTGAAACTTGAGAGTAGACA
GTATGGTAATAGAAACAATACAAGACAGATTTGCTAACATCCATGTAACTGCAGTGTGAC
AAAAAACTGAAGTGTAAGCATACTGCTTTGGCTACTCTGGCATCTGTTAGCTAGTGTGTA
CCTTTGGTGTGTATCTGAAAGGACAACATTTGCTGCCCTAGATCTAATTGCAGTCATTTA
TCAATAAATGCCAGTAAATGGAAATTATATTACATTTGACTATTTTCCCAATGAAAGAAA
AAATTGGTCTATAAAACCTAACCACCTATTTAGCCTAGTAATGTGCCTTGAATATATGTG
TCTCACAGAATCTGGCTCCTGCTATCTGTTCTTCCTTCTAAACCTTTTGATTCATGCTGA
TTCGTTTATTTGACATATATTTTTGACCCATCAGAACTCTTTTCCTGGTGATCATGCGGA
GTGTAAATGTTTTTTCATTCTTCTTCATCAACACTAATGCCTTTTAATTATATCAGCACT
TCCTATTGGTGTTTACATTTGTTCCATGAAAACATTTGGCATTCCTGAATAATAATTTCC
AAATGTTGTTAATCCAAAGAAAAAGACTTAAAGCTTATTTCCCTTTCTTATACACACCTG
AATAAAAATGATGTGCATGTTTTAGGGATAAATTACTAAACACCCCCTTGGTCTATTTAT
GTATAAGAATGCTTTTAAAGCACATATCTTGTTTTAAATGATGCACAAACTGAAGGCATT
AATAAAATGTAAGAGTAATATGAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CW09_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CW09_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1725-1844, - strand, RNAz p=0.71803

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1725-1844, - strand, RNAz p=0.71803

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1725-1945, gnl|bosTau2|chr29 (3034718-3034500)
               

               
               1725-1945, gnl|Mm7|chrUn_random (10987991-10987798)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1725-1945, gnl|bosTau2|chr29 (3034718-3034500)
               

               
               1725-1945, gnl|Mm7|chrUn_random (10987991-10987798)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1725-1945, gnl\|bosTau2\|chr29 (3034718-3034500)
	1725-1945, gnl\|Mm7\|chrUn_random (10987991-10987798)

	tbr (0.462535)
	vin (0.332557)
	liv (0.292569)
	lin (0.291206)
	kid (0.259471)
	ret (0.257467)
	cbl (0.229595)
	mas (0.210305)
	nlu (0.191681)
	mgm (0.180343)
	fty (0.17584)
	sin (0.174948)
	fhi (0.169578)
	fco (0.157208)
	bfe (0.149858)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	ldo (0.0970026)