Ss1.1-Pig4-TMW8026I22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAGAGCGGCGCGGTCGAGGCTCCGGTGTCCCAGACCCCGCTAGAAGAGAGCATGGCTG AGCAGGAGCCCACCGCCGAGCAGCTGGCACAGATTGCAGCTGAGAACGAGGAGGACGAGC ACTCGGTCAACTACAAGCCCCCGGCCCAGAAGAGCATCCAGGAGATCCAGGAGCTGGACA AGGACGACGAGAGTTTGCGCAAGTACAAGGAGGCCCTGTTGGGCCGCGTGGCCGTGTCTG CTGACCCCAACGTCCCCAATGTCGTGGTGACCCGCCTGACCCTGGTGTGTAGCACTGCCC CAGGGCCTCTAGAGCTGGACCTGACAGGAGATCTGGAGAGTTTCAAGAAGCAATCCTTTG TGCTGAAGGAGGGTGTGGAATACCGGATAAAGATCTCTTTCCGGGTGAACCGAGAGATCG TGTCGGGCATGAAGTACATCCAGCACACGTACAGGAAGGGGGTCAAGATCGACAAGACCG ATTACATGGTGGGGAGCTACGGGCCCCGGGCGGAGGAGTATGAGTTCCTGACGCCCATGG AGGAGGCGCCCAAGGGCATGCTGGCTCGAGGCAGCTACAGCATCAAGTCGCGCTTCACAG ACGACGACAGGACCGACCACCTGTCCTGGGAGTGGAACCTCACCATCAAGAAGGAGTGGA AGGACTGAGCTGCGGCCGGAGGGAGGCGGGCAGGGCGGCCGAGGTCGAGGACGTGCCCCC CCTCCCCCCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAGAGCGGCGCGGTCGAGGCTCCGGTGTCCCAGACCCCGCTAGAAGAGAGCATGGCTG AGCAGGAGCCCACCGCCGAGCAGCTGGCACAGATTGCAGCTGAGAACGAGGAGGACGAGC ACTCGGTCAACTACAAGCCCCCGGCCCAGAAGAGCATCCAGGAGATCCAGGAGCTGGACA AGGACGACGAGAGTTTGCGCAAGTACAAGGAGGCCCTGTTGGGCCGCGTGGCCGTGTCTG CTGACCCCAACGTCCCCAATGTCGTGGTGACCCGCCTGACCCTGGTGTGTAGCACTGCCC CAGGGCCTCTAGAGCTGGACCTGACAGGAGATCTGGAGAGTTTCAAGAAGCAATCCTTTG TGCTGAAGGAGGGTGTGGAATACCGGATAAAGATCTCTTTCCGGGTGAACCGAGAGATCG TGTCGGGCATGAAGTACATCCAGCACACGTACAGGAAGGGGGTCAAGATCGACAAGACCG ATTACATGGTGGGGAGCTACGGGCCCCGGGCGGAGGAGTATGAGTTCCTGACGCCCATGG AGGAGGCGCCCAAGGGCATGCTGGCTCGAGGCAGCTACAGCATCAAGTCGCGCTTCACAG ACGACGACAGGACCGACCACCTGTCCTGGGAGTGGAACCTCACCATCAAGAAGGAGTGGA AGGACTGAGCTGCGGCCGGAGGGAGGCGGGCAGGGCGGCCGAGGTCGAGGACGTGCCCCC CCTCCCCCCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 106-243, + strand, RNAz p=0.928024 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 106-243, + strand, RNAz p=0.928024 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 26-243, gnl|bosTau2|chr19 (45387443-45387226) | |
| 26-243, gnl|canFam2|chr9 (3421206-3421008) | |
| 26-243, gnl|canFam2|chr9 (3421206-3421006) | |
| 26-243, gnl|danRer3|chr17 (10994954-10994762) | |
| 26-243, gnl|danRer3|chr17 (10994954-10994759) | |
| 26-243, gnl|echTel1|scaffold_221646 (517-321) | |
| 26-243, gnl|echTel1|scaffold_221646 (518-319) | |
| 26-243, gnl|fr1|chrUn (128701968-128701780) | |
| 26-243, gnl|fr1|chrUn (128701968-128701775) | |
| 26-243, gnl|galGal2|chrUn (75822476-75822281) | |
| 26-243, gnl|galGal2|chrUn (75822479-75822279) | |
| 26-243, gnl|hg17|chr17 (77420901-77421099) | |
| 26-243, gnl|Hg17|chr17 (77421123-77420906) | |
| 26-243, gnl|hg17|chr17_random (1926788-1926992) | |
| 26-243, gnl|mm7|chr11 (120689222-120689420) | |
| 26-243, gnl|mm7|chr11 (120689222-120689422) | |
| 26-243, gnl|Mm7|chr11 (120689439-120689227) | |
| 26-243, gnl|monDom2|scaffold_18 (14755119-14755314) | |
| 26-243, gnl|monDom2|scaffold_18 (14755116-14755316) | |
| 26-243, gnl|oryCun1|scaffold_199142 (62310-62124) | |
| 26-243, gnl|oryCun1|scaffold_199142 (62284-62122) | |
| 26-243, gnl|panTro1|chr19 (81181372-81181570) | |
| 26-243, gnl|panTro1|chr19 (81181372-81181572) | |
| 26-243, gnl|rheMac2|chr16 (77294313-77294511) | |
| 26-243, gnl|rheMac2|chr16 (77294313-77294513) | |
| 26-243, gnl|rn3|chr10 (109984343-109984541) | |
| 26-243, gnl|rn3|chr10 (109984343-109984543) | |
| 26-243, gnl|tetNig1|chrUn_random (39536048-39536243) | |
| 26-243, gnl|tetNig1|chrUn_random (39536048-39536243) | |
| 26-243, gnl|xenTro1|scaffold_973 (163952-163760) | |
| 26-243, gnl|xenTro1|scaffold_973 (163955-163760) | |
| 471-731, gnl|bosTau2|chr19 (45386353-45386092) | |
| 471-731, gnl|Hg17|chr17 (77420238-77419972) | |
| 471-731, gnl|Mm7|chr11 (120688473-120688209) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-243, gnl|bosTau2|chr19 (45387443-45387226) | |
| 26-243, gnl|canFam2|chr9 (3421206-3421008) | |
| 26-243, gnl|canFam2|chr9 (3421206-3421006) | |
| 26-243, gnl|danRer3|chr17 (10994954-10994762) | |
| 26-243, gnl|danRer3|chr17 (10994954-10994759) | |
| 26-243, gnl|echTel1|scaffold_221646 (517-321) | |
| 26-243, gnl|echTel1|scaffold_221646 (518-319) | |
| 26-243, gnl|fr1|chrUn (128701968-128701780) | |
| 26-243, gnl|fr1|chrUn (128701968-128701775) | |
| 26-243, gnl|galGal2|chrUn (75822476-75822281) | |
| 26-243, gnl|galGal2|chrUn (75822479-75822279) | |
| 26-243, gnl|hg17|chr17 (77420901-77421099) | |
| 26-243, gnl|Hg17|chr17 (77421123-77420906) | |
| 26-243, gnl|hg17|chr17_random (1926788-1926992) | |
| 26-243, gnl|mm7|chr11 (120689222-120689420) | |
| 26-243, gnl|mm7|chr11 (120689222-120689422) | |
| 26-243, gnl|Mm7|chr11 (120689439-120689227) | |
| 26-243, gnl|monDom2|scaffold_18 (14755119-14755314) | |
| 26-243, gnl|monDom2|scaffold_18 (14755116-14755316) | |
| 26-243, gnl|oryCun1|scaffold_199142 (62310-62124) | |
| 26-243, gnl|oryCun1|scaffold_199142 (62284-62122) | |
| 26-243, gnl|panTro1|chr19 (81181372-81181570) | |
| 26-243, gnl|panTro1|chr19 (81181372-81181572) | |
| 26-243, gnl|rheMac2|chr16 (77294313-77294511) | |
| 26-243, gnl|rheMac2|chr16 (77294313-77294513) | |
| 26-243, gnl|rn3|chr10 (109984343-109984541) | |
| 26-243, gnl|rn3|chr10 (109984343-109984543) | |
| 26-243, gnl|tetNig1|chrUn_random (39536048-39536243) | |
| 26-243, gnl|tetNig1|chrUn_random (39536048-39536243) | |
| 26-243, gnl|xenTro1|scaffold_973 (163952-163760) | |
| 26-243, gnl|xenTro1|scaffold_973 (163955-163760) | |
| 471-731, gnl|bosTau2|chr19 (45386353-45386092) | |
| 471-731, gnl|Hg17|chr17 (77420238-77419972) | |
| 471-731, gnl|Mm7|chr11 (120688473-120688209) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| eje (0.0988338) |