Non-Coding RNA Search

Ss1.1-Pig4-TMW8026J04.5

Sequence:


               
               TCCAGCCCAAGCCTGTCCCGGGCGTCTCCCGCATGTGCCCCAGGAGACCTGGCTCAGGGC
GCCCGTCCCTGCAGAGCGTGGGAGGCAGTCCAAGCATCCCCCACAGTAGAGTGGGTCAGC
CAGCTGCGGAAGAGTCCGACGGTGGGCCACTCCTCCTGAGTGACAACAAACGACCTCGCG
CAGGTAGATCGCGAAACTGGAACGCTGAGTGGGAAAGAGAAAGCTGGACGGATGTGCGAG
TGTAGATACGCTTTGCTGGGGAGAAGGCAACTTAAAAGCAGGGACTCGTAGACACTACAG
TATTTACGGACGTGCGTATGTGGTAACATTGAGAGAGAAGCAAAGTGCAACTGGCACCTG
CGAGAGCGGTTACCTCTGGTGAGGACGAGGGAGGACAGATTCGAGAGGGGCATCGGGAGG
CTTCAGAGGGACCCGTCCTGTCCTGCTAAGCAGGGAGGTGGGCACACGGTGTGGTCATTG
TTTTTAAAGTATAAATTTAGTAGTGTGATCTGCTTTTTTCCGCGTGCATTTTGTGATGAC
ATTTTTAAAATCCAGCTATGCCAGATATGTGGATCGGTGCTCTGGAAGGATGTCGGGAGG
CACATGTTCCCTTAACCCCCTTGAAGGACCTATGCGTGAATGCACCATTAATCCTTGGCC
TTCTTGTTTCTTTTCCCTGTCTAGAGTGTTTGTACGACAGAATAGCACAAGAAACTGTGG
ATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAAAAAATCA
TGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTGCAAT
AAACTTTGGATTTTTCATAAAGCCTTCTCGTTTTCCTTGCGTGGTGTGTGATTTGCGGGC
GACGGCGCTGTCTGGAACAGGCAGAGTCCACCGTGCACGGTGGTTGTGTGGTCAGGGAGC
CAGTAGGGTCCTGGGGCCGGCAGCTTGTTCTGAACTTGGACTCTCCACTCCAAAGAAGGC
AGACGGATTTGCCGAGCCTCCAGCAGCGTCCTGGCGCCAGTGTTGTCCTGGGGATGGTGG
AAGCTTTTCGGCGGGGGATAACGTGTCTCTGCGTTGCCTATCAGGCAGCCAAGGATTTGA
GCTGATGTTTTTACCATTCAAGGACGTCTATCTCTGTTCCTCTATTTTGTTCTGTAATAA
AGCTTCATTGATTCTTTGCTGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCCCAAGCCTGTCCCGGGCGTCTCCCGCATGTGCCCCAGGAGACCTGGCTCAGGGC
GCCCGTCCCTGCAGAGCGTGGGAGGCAGTCCAAGCATCCCCCACAGTAGAGTGGGTCAGC
CAGCTGCGGAAGAGTCCGACGGTGGGCCACTCCTCCTGAGTGACAACAAACGACCTCGCG
CAGGTAGATCGCGAAACTGGAACGCTGAGTGGGAAAGAGAAAGCTGGACGGATGTGCGAG
TGTAGATACGCTTTGCTGGGGAGAAGGCAACTTAAAAGCAGGGACTCGTAGACACTACAG
TATTTACGGACGTGCGTATGTGGTAACATTGAGAGAGAAGCAAAGTGCAACTGGCACCTG
CGAGAGCGGTTACCTCTGGTGAGGACGAGGGAGGACAGATTCGAGAGGGGCATCGGGAGG
CTTCAGAGGGACCCGTCCTGTCCTGCTAAGCAGGGAGGTGGGCACACGGTGTGGTCATTG
TTTTTAAAGTATAAATTTAGTAGTGTGATCTGCTTTTTTCCGCGTGCATTTTGTGATGAC
ATTTTTAAAATCCAGCTATGCCAGATATGTGGATCGGTGCTCTGGAAGGATGTCGGGAGG
CACATGTTCCCTTAACCCCCTTGAAGGACCTATGCGTGAATGCACCATTAATCCTTGGCC
TTCTTGTTTCTTTTCCCTGTCTAGAGTGTTTGTACGACAGAATAGCACAAGAAACTGTGG
ATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAAAAAATCA
TGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTGCAAT
AAACTTTGGATTTTTCATAAAGCCTTCTCGTTTTCCTTGCGTGGTGTGTGATTTGCGGGC
GACGGCGCTGTCTGGAACAGGCAGAGTCCACCGTGCACGGTGGTTGTGTGGTCAGGGAGC
CAGTAGGGTCCTGGGGCCGGCAGCTTGTTCTGAACTTGGACTCTCCACTCCAAAGAAGGC
AGACGGATTTGCCGAGCCTCCAGCAGCGTCCTGGCGCCAGTGTTGTCCTGGGGATGGTGG
AAGCTTTTCGGCGGGGGATAACGTGTCTCTGCGTTGCCTATCAGGCAGCCAAGGATTTGA
GCTGATGTTTTTACCATTCAAGGACGTCTATCTCTGTTCCTCTATTTTGTTCTGTAATAA
AGCTTCATTGATTCTTTGCTGCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               697-855, - strand, RNAz p=0.788944

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               697-855, - strand, RNAz p=0.788944

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               362-1221, gnl|bosTau2|chr3 (69627677-69628531)
               

               
               362-1221, gnl|Hg17|chr1 (48906052-48905213)
               

               
               362-1221, gnl|Mm7|chr4 (110835770-110836735)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               362-1221, gnl|bosTau2|chr3 (69627677-69628531)
               

               
               362-1221, gnl|Hg17|chr1 (48906052-48905213)
               

               
               362-1221, gnl|Mm7|chr4 (110835770-110836735)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	362-1221, gnl\|bosTau2\|chr3 (69627677-69628531)
	362-1221, gnl\|Hg17\|chr1 (48906052-48905213)
	362-1221, gnl\|Mm7\|chr4 (110835770-110836735)