Non-Coding RNA Search

Ss1.1-Pig4-TMW8026J05.5

Sequence:


               
               TCGCCTGATAAGCGACCGCCGCTCGGGGAGGGAAGGTGCCGGCGCGCGGAGTCCGAGGCC
AGCCCGCGAGGACGTCGCCATGCCTAAAGCACCAAAGGGAAAGAATGTGGGACAGGAAAA
AAAAGTCATCCATCCATATAGTAGAAAAGCAGCTCAGATTACGAGAGAGGCCCACAGGCA
AGACAAAAAGGAAAAATTGAAAAATGAAAAGGCACTGCGTCTCAACCTTATTGGTGAAAA
ACTGCAGTGGTTTCAAAATCATCTCGATCCCCAAAAAGTACGATATTCAAAGAGAGCCGC
TTGCAACTTAATTGAAAGGTATCTGAGTCGGTTCAACGACGAGCTGGAGCAGATAGAGCT
GCAGAATGACGTCAGGGCCAGGCAGGGGAGGCGGCATTGCGCACGAGAGGCGGCCATCAG
GCAGACGGTGCAGCGCGAGCGACAGCAGTTCCAGGGCTATGGCTTCGAGATTCCAGACAT
CTTAAATGCAAGTAATCTGAAGATTTTCAGGGAATGGGATTTTGATCTGAAGAAGTTGCC
AAATATTAAAATGAGGAAGATTTGTGCTAATGATGCACTGCCTAAGAAGTGCAAGCGGAG
AACGGATCCAGCCATAGACAGAGACTTGGGGGAGCTGGAACTGAAAGATGAGTCCAGTGA
CAGTGACACGGACCAGGAGATGACCGCAGTGGAGTGATTGTCCTTCCTTAAGCTGCAGAT
GATTGGAGAACCTCATGTTACACTTGAATCGATTATGGAAAATAGTTGTCTAGATACAAG
AATTCCTTATTAACTCATTCTCTTAAATGACAAGAATCCGTTTGCAGTTTCAAAAACAGT
ATTACGATTTTTACTTAAAAATGAGCATTGCTTTTCTTATACATTAGGATGTTGGACTAG
GTAGGAGTGATCTCTCTGAATCTCTGAGCTGAATGAACAGTATGAATGAGGACAAACGTG
TTGTACTTTTCCCCTAACATTTGCTTGGAATAACCTAATCTCACACTTAGGGCCGTGGCA
GCAGCTACTGAAGGTTACTGTGGATACCTCTTGAGCAGTGGTGATGGCAGAATTGCCTTT
TAGTAGTGAGGTTTCATTATTCTTCCTCTTACATTAATCTGTTTTCTTTCCTTGTGAAGG
GGAATATGTGATATAGAATTTATATACACATATGGGTTGTACATTGCTTTTATTTATTGC
CTTTGAGCCAGAGTTAGTTAAATGGTTAAAAACAAAATCAAACAGGAGTCCTTGTTATGT
AGAGCTCCTGTGCTTAAACTGTTATCTTGATAAAGGGGATAAATGGTTTCAGGTTAGCTC
TTTTGATTTCTATATTATTTTTTACTTTCTCATTGTGAAAAATGATAGGTTGTTTTTTGT
GGAAACAGCAAGATTATAGAAAAGTAGTTATTTCAGTTGTGTTATTTTTTTCTTCTAAAA
GATAAATTAAATTGACATATAGCTCAGTATTTCCAGTATCATGAAAAAACATGAATGTGC
AGAATGTTCCTCACAGAACTTGAGAAATGCAAGTATCTTTTAGTCTTTTTATAAAGAATG
CAATGGAAGTGTATTTGAGTATTTTCAAGGAAAAAAAAGTTTTATGAGGTAACTGAGTAT
CACTAAGCCTTACTAACAGTTTTTTACTTTAGAAAATTAAAAATAAAACATTTCTATAAT
TTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCTGATAAGCGACCGCCGCTCGGGGAGGGAAGGTGCCGGCGCGCGGAGTCCGAGGCC
AGCCCGCGAGGACGTCGCCATGCCTAAAGCACCAAAGGGAAAGAATGTGGGACAGGAAAA
AAAAGTCATCCATCCATATAGTAGAAAAGCAGCTCAGATTACGAGAGAGGCCCACAGGCA
AGACAAAAAGGAAAAATTGAAAAATGAAAAGGCACTGCGTCTCAACCTTATTGGTGAAAA
ACTGCAGTGGTTTCAAAATCATCTCGATCCCCAAAAAGTACGATATTCAAAGAGAGCCGC
TTGCAACTTAATTGAAAGGTATCTGAGTCGGTTCAACGACGAGCTGGAGCAGATAGAGCT
GCAGAATGACGTCAGGGCCAGGCAGGGGAGGCGGCATTGCGCACGAGAGGCGGCCATCAG
GCAGACGGTGCAGCGCGAGCGACAGCAGTTCCAGGGCTATGGCTTCGAGATTCCAGACAT
CTTAAATGCAAGTAATCTGAAGATTTTCAGGGAATGGGATTTTGATCTGAAGAAGTTGCC
AAATATTAAAATGAGGAAGATTTGTGCTAATGATGCACTGCCTAAGAAGTGCAAGCGGAG
AACGGATCCAGCCATAGACAGAGACTTGGGGGAGCTGGAACTGAAAGATGAGTCCAGTGA
CAGTGACACGGACCAGGAGATGACCGCAGTGGAGTGATTGTCCTTCCTTAAGCTGCAGAT
GATTGGAGAACCTCATGTTACACTTGAATCGATTATGGAAAATAGTTGTCTAGATACAAG
AATTCCTTATTAACTCATTCTCTTAAATGACAAGAATCCGTTTGCAGTTTCAAAAACAGT
ATTACGATTTTTACTTAAAAATGAGCATTGCTTTTCTTATACATTAGGATGTTGGACTAG
GTAGGAGTGATCTCTCTGAATCTCTGAGCTGAATGAACAGTATGAATGAGGACAAACGTG
TTGTACTTTTCCCCTAACATTTGCTTGGAATAACCTAATCTCACACTTAGGGCCGTGGCA
GCAGCTACTGAAGGTTACTGTGGATACCTCTTGAGCAGTGGTGATGGCAGAATTGCCTTT
TAGTAGTGAGGTTTCATTATTCTTCCTCTTACATTAATCTGTTTTCTTTCCTTGTGAAGG
GGAATATGTGATATAGAATTTATATACACATATGGGTTGTACATTGCTTTTATTTATTGC
CTTTGAGCCAGAGTTAGTTAAATGGTTAAAAACAAAATCAAACAGGAGTCCTTGTTATGT
AGAGCTCCTGTGCTTAAACTGTTATCTTGATAAAGGGGATAAATGGTTTCAGGTTAGCTC
TTTTGATTTCTATATTATTTTTTACTTTCTCATTGTGAAAAATGATAGGTTGTTTTTTGT
GGAAACAGCAAGATTATAGAAAAGTAGTTATTTCAGTTGTGTTATTTTTTTCTTCTAAAA
GATAAATTAAATTGACATATAGCTCAGTATTTCCAGTATCATGAAAAAACATGAATGTGC
AGAATGTTCCTCACAGAACTTGAGAAATGCAAGTATCTTTTAGTCTTTTTATAAAGAATG
CAATGGAAGTGTATTTGAGTATTTTCAAGGAAAAAAAAGTTTTATGAGGTAACTGAGTAT
CACTAAGCCTTACTAACAGTTTTTTACTTTAGAAAATTAAAAATAAAACATTTCTATAAT
TTCAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|15080135|gb|AAH11842.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15080135|gb|AAH11842.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               58-434, gnl|bosTau2|chr5 (2730289-2729935)
               

               
               58-434, gnl|Hg17|chr1 (46025317-46024941)
               

               
               58-434, gnl|Mm7|chr1 (17583968-17584354)
               


               
               548-1080, gnl|bosTau2|chr5 (2729551-2729011)
               

               
               548-1080, gnl|Hg17|chr1 (46024827-46023968)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-434, gnl|bosTau2|chr5 (2730289-2729935)
               

               
               58-434, gnl|Hg17|chr1 (46025317-46024941)
               

               
               58-434, gnl|Mm7|chr1 (17583968-17584354)
               


               
               548-1080, gnl|bosTau2|chr5 (2729551-2729011)
               

               
               548-1080, gnl|Hg17|chr1 (46024827-46023968)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               kid (0.389206)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	58-434, gnl\|bosTau2\|chr5 (2730289-2729935)
	58-434, gnl\|Hg17\|chr1 (46025317-46024941)
	58-434, gnl\|Mm7\|chr1 (17583968-17584354)

	548-1080, gnl\|bosTau2\|chr5 (2729551-2729011)
	548-1080, gnl\|Hg17\|chr1 (46024827-46023968)

	kid (0.389206)
	vin (0.332557)
	cki (0.330469)
	sme (0.305437)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	nlu (0.191681)
	fty (0.17584)
	cut (0.169924)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	ova (0.129132)
	ret (0.128733)
	ese (0.126502)
	med (0.116252)
	eje (0.0988338)
	ldo (0.0970026)