Ss1.1-Pig4-TMW8026J07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGCCTCGCAGAGTTGGGAGAAGGAAGGCTGGGGGGTGTGGAAAAATAAAAGGAAAAG TCCTTGCACCATGTAGACCCGCGCCCCCCACCCTGGCACCCGCGCCAGCCGGGGATCTCC CAGTCTGCGGCCATGAACGCGAGCAGCGAAGGCGAGAGCTTCCCGGGCTCGGTGCAAATT CCAGGTGGCACAACCGTGCTGGTTGAGCTGACTCCTGACATTCATATCTGTGGCATCTGC AAGCAGCAGTTTAACAACCTGGATGCCTTTGTGGCTCACAAGCAAAGTGGCTGCCAGCTG ACCAGCACGTCCGGGGCGACGCCCAGCACGGTCCAGTTTGTATCAGAGGAAACGGTGCCT GCCACCCAGACTCAGACCACCACGCGAACCATCACCTCAGAGACCCAGACGATCACAGTT GAAGGCTCCCCTGGAAGGGAACCGTGGGGGAGGGCATGCATTTCAGACAATCGCCAACCC CTCGGGGCATTCGCCACCGTCATCTCTCTCCCTGCCAAGTCCCGTGCCAAAAAGCCCACG GCCCCACCTGCTCAGAAACGGCTGAACTGTTGCTATCCAGGTTGTCAGTTCAAGACTGCC TATGGCATGAAGGACATGGAGCGTCATTTAAAAATCCACACAGTGTGACAAGCCCCACAA GTGCGAGGTCTGCGGCAAGTGCTTCAGCCGGAAGGATAAGCTGAAGACACACACGCGATG CCACACGGGCGTGAAGCCCTACAAGTGTAAGACATGTGACTATGCTGCTGCCGACAGCAG CAGCCTCAACAAGCACCTGCGGATACATTCCGATGAGCGGCCCTTCAAATGCCAGATCTG CCCCTATGCCAGCCGCAACTCCAGCCAGCTCACCGTCCACCTCCGCTCCCACACAGGTCT TAACACCAAAAAGCTGGAACACATCCCACTCTTTTGAACTTATGGTAAGAAAGTGAACAT GGGTCATGTGTACGGAAATCACCTAGCATCTAAGAGTACCAGCTTTGGAATCAGCCTGGC TTGGAACCCAGGCTCTGCCGTGTACGACTGGCTGACCATGAACAAGTTATGTAGTCACTC TAGGGCTCAGTCTCCTCACTGTCCAGTAGTGTTGATCACAGTACTAGTACCCACCTCATG GGACTGTCAGAACCGCAAGGACAACCTGACCATGCATATGCGGTGCCACACCAGCGTGAA GCCCCACAAGTGTCACCTGTGTGACTATGCCGCCGTGGACAGCAGCAGCCTCAAGAAGCA CCTGCGGATACATTCCGACGAGCGGCCATACAAATGCCAGCTCTGCCCGTACGCCAGCCG CAACTCCAGCCAGCTCACCGTCCACCTCCGCTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGCCTCGCAGAGTTGGGAGAAGGAAGGCTGGGGGGTGTGGAAAAATAAAAGGAAAAG TCCTTGCACCATGTAGACCCGCGCCCCCCACCCTGGCACCCGCGCCAGCCGGGGATCTCC CAGTCTGCGGCCATGAACGCGAGCAGCGAAGGCGAGAGCTTCCCGGGCTCGGTGCAAATT CCAGGTGGCACAACCGTGCTGGTTGAGCTGACTCCTGACATTCATATCTGTGGCATCTGC AAGCAGCAGTTTAACAACCTGGATGCCTTTGTGGCTCACAAGCAAAGTGGCTGCCAGCTG ACCAGCACGTCCGGGGCGACGCCCAGCACGGTCCAGTTTGTATCAGAGGAAACGGTGCCT GCCACCCAGACTCAGACCACCACGCGAACCATCACCTCAGAGACCCAGACGATCACAGTT GAAGGCTCCCCTGGAAGGGAACCGTGGGGGAGGGCATGCATTTCAGACAATCGCCAACCC CTCGGGGCATTCGCCACCGTCATCTCTCTCCCTGCCAAGTCCCGTGCCAAAAAGCCCACG GCCCCACCTGCTCAGAAACGGCTGAACTGTTGCTATCCAGGTTGTCAGTTCAAGACTGCC TATGGCATGAAGGACATGGAGCGTCATTTAAAAATCCACACAGTGTGACAAGCCCCACAA GTGCGAGGTCTGCGGCAAGTGCTTCAGCCGGAAGGATAAGCTGAAGACACACACGCGATG CCACACGGGCGTGAAGCCCTACAAGTGTAAGACATGTGACTATGCTGCTGCCGACAGCAG CAGCCTCAACAAGCACCTGCGGATACATTCCGATGAGCGGCCCTTCAAATGCCAGATCTG CCCCTATGCCAGCCGCAACTCCAGCCAGCTCACCGTCCACCTCCGCTCCCACACAGGTCT TAACACCAAAAAGCTGGAACACATCCCACTCTTTTGAACTTATGGTAAGAAAGTGAACAT GGGTCATGTGTACGGAAATCACCTAGCATCTAAGAGTACCAGCTTTGGAATCAGCCTGGC TTGGAACCCAGGCTCTGCCGTGTACGACTGGCTGACCATGAACAAGTTATGTAGTCACTC TAGGGCTCAGTCTCCTCACTGTCCAGTAGTGTTGATCACAGTACTAGTACCCACCTCATG GGACTGTCAGAACCGCAAGGACAACCTGACCATGCATATGCGGTGCCACACCAGCGTGAA GCCCCACAAGTGTCACCTGTGTGACTATGCCGCCGTGGACAGCAGCAGCCTCAAGAAGCA CCTGCGGATACATTCCGACGAGCGGCCATACAAATGCCAGCTCTGCCCGTACGCCAGCCG CAACTCCAGCCAGCTCACCGTCCACCTCCGCTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-116, + strand, RNAz p=0.555832 | |
| 647-844, - strand, RNAz p=0.807203 | |
| 723-838, - strand, RNAz p=0.973392 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-116, + strand, RNAz p=0.555832 | |
| 647-844, - strand, RNAz p=0.807203 | |
| 723-838, - strand, RNAz p=0.973392 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 759-857, - strand, RNAmicro p=0.933661 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_022088, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-178, gnl|bosTau2|chr3 (63405506-63405694) | |
| 1-178, gnl|Hg17|chr20 (50241714-50241537) | |
| 1-178, gnl|Mm7|chr2 (168747935-168747773) | |
| 179-418, gnl|bosTau2|chr3 (63408655-63408894) | |
| 179-418, gnl|Hg17|chr20 (50237017-50236778) | |
| 179-418, gnl|Mm7|chr2 (168744432-168744199) | |
| 647-898, gnl|bosTau2|chr3 (63475855-63476107) | |
| 647-898, gnl|canFam2|chr24 (41187581-41187831) | |
| 647-898, gnl|canFam2|chr24 (41187572-41187853) | |
| 647-898, gnl|danRer3|chrNA (253324987-253324732) | |
| 647-898, gnl|danRer3|chrNA (253324993-253324723) | |
| 647-898, gnl|dasNov1|scaffold_85620 (439-186) | |
| 647-898, gnl|dasNov1|scaffold_85620 (448-167) | |
| 647-898, gnl|echTel1|scaffold_200358 (4896-5149) | |
| 647-898, gnl|echTel1|scaffold_200358 (4887-5165) | |
| 647-898, gnl|fr1|chrUn (40020924-40020669) | |
| 647-898, gnl|fr1|chrUn (40020933-40020654) | |
| 647-898, gnl|galGal2|chr20 (12593466-12593216) | |
| 647-898, gnl|galGal2|chr20 (12593473-12593200) | |
| 647-898, gnl|hg17|chr14 (50241528-50241766) | |
| 647-898, gnl|hg17|chr20 (50138329-50138607) | |
| 647-898, gnl|Hg17|chr20 (50138587-50138336) | |
| 647-898, gnl|loxAfr1|scaffold_1929 (74666-74919) | |
| 647-898, gnl|loxAfr1|scaffold_1929 (74657-74935) | |
| 647-898, gnl|mm7|chr2 (168692439-168692692) | |
| 647-898, gnl|mm7|chr2 (168692430-168692708) | |
| 647-898, gnl|Mm7|chr2 (168692688-168692437) | |
| 647-898, gnl|monDom2|scaffold_1 (164359773-164360025) | |
| 647-898, gnl|monDom2|scaffold_1 (164359760-164360042) | |
| 647-898, gnl|oryCun1|scaffold_209487 (29725-29472) | |
| 647-898, gnl|oryCun1|scaffold_209487 (29734-29456) | |
| 647-898, gnl|panTro1|chr15 (49659776-49660014) | |
| 647-898, gnl|panTro1|chr21_random (15669605-15669883) | |
| 647-898, gnl|rheMac2|chr10 (12372173-12371920) | |
| 647-898, gnl|rheMac2|chr10 (12372182-12371904) | |
| 647-898, gnl|rn3|chr3 (159893012-159893265) | |
| 647-898, gnl|rn3|chr3 (159893003-159893281) | |
| 647-898, gnl|tetNig1|chr9 (9808937-9809192) | |
| 647-898, gnl|tetNig1|chr9 (9808928-9809207) | |
| 647-898, gnl|xenTro1|scaffold_165 (1911481-1911734) | |
| 647-898, gnl|xenTro1|scaffold_165 (1911473-1911748) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-178, gnl|bosTau2|chr3 (63405506-63405694) | |
| 1-178, gnl|Hg17|chr20 (50241714-50241537) | |
| 1-178, gnl|Mm7|chr2 (168747935-168747773) | |
| 179-418, gnl|bosTau2|chr3 (63408655-63408894) | |
| 179-418, gnl|Hg17|chr20 (50237017-50236778) | |
| 179-418, gnl|Mm7|chr2 (168744432-168744199) | |
| 647-898, gnl|bosTau2|chr3 (63475855-63476107) | |
| 647-898, gnl|canFam2|chr24 (41187581-41187831) | |
| 647-898, gnl|canFam2|chr24 (41187572-41187853) | |
| 647-898, gnl|danRer3|chrNA (253324987-253324732) | |
| 647-898, gnl|danRer3|chrNA (253324993-253324723) | |
| 647-898, gnl|dasNov1|scaffold_85620 (439-186) | |
| 647-898, gnl|dasNov1|scaffold_85620 (448-167) | |
| 647-898, gnl|echTel1|scaffold_200358 (4896-5149) | |
| 647-898, gnl|echTel1|scaffold_200358 (4887-5165) | |
| 647-898, gnl|fr1|chrUn (40020924-40020669) | |
| 647-898, gnl|fr1|chrUn (40020933-40020654) | |
| 647-898, gnl|galGal2|chr20 (12593466-12593216) | |
| 647-898, gnl|galGal2|chr20 (12593473-12593200) | |
| 647-898, gnl|hg17|chr14 (50241528-50241766) | |
| 647-898, gnl|hg17|chr20 (50138329-50138607) | |
| 647-898, gnl|Hg17|chr20 (50138587-50138336) | |
| 647-898, gnl|loxAfr1|scaffold_1929 (74666-74919) | |
| 647-898, gnl|loxAfr1|scaffold_1929 (74657-74935) | |
| 647-898, gnl|mm7|chr2 (168692439-168692692) | |
| 647-898, gnl|mm7|chr2 (168692430-168692708) | |
| 647-898, gnl|Mm7|chr2 (168692688-168692437) | |
| 647-898, gnl|monDom2|scaffold_1 (164359773-164360025) | |
| 647-898, gnl|monDom2|scaffold_1 (164359760-164360042) | |
| 647-898, gnl|oryCun1|scaffold_209487 (29725-29472) | |
| 647-898, gnl|oryCun1|scaffold_209487 (29734-29456) | |
| 647-898, gnl|panTro1|chr15 (49659776-49660014) | |
| 647-898, gnl|panTro1|chr21_random (15669605-15669883) | |
| 647-898, gnl|rheMac2|chr10 (12372173-12371920) | |
| 647-898, gnl|rheMac2|chr10 (12372182-12371904) | |
| 647-898, gnl|rn3|chr3 (159893012-159893265) | |
| 647-898, gnl|rn3|chr3 (159893003-159893281) | |
| 647-898, gnl|tetNig1|chr9 (9808937-9809192) | |
| 647-898, gnl|tetNig1|chr9 (9808928-9809207) | |
| 647-898, gnl|xenTro1|scaffold_165 (1911481-1911734) | |
| 647-898, gnl|xenTro1|scaffold_165 (1911473-1911748) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) |