Non-Coding RNA Search

Ss1.1-Pig4-TMW8026J13.5

Sequence:


               
               AGCTGAGGTGTGAGCAGCTGCCAGAGTCGGTAGTTGGGAGATCCGGAGCTGGGCGCGGAT
TCTCGGAGACACCGACCCTCAGAAGAGCCACAGGCACCATGTCAGAGTCGACCAGGGATG
CACATCAGATCCCGCGCAGCAGCAAGGCCTGCCGCCGCCTCTTTGGCCCAGTGGACAGTG
AGCAGCTGCGCCAGGACTGCGATGCACTGATGGCCAGCTGCGTGCAAGAGGCCCGAGAGC
GATGGAACTTCGACTTCATCACTGAGACCCCCCTGGAGGGTGACTTCGCCTGGGAACGTG
TGCGAGGCCTTGGTCTGCCCAAGATCTACCTGCCCACAGGGCCCCGGGGGACCTGGGATG
ACCTGGGAGGGGGCAAGCGGCCAAGCACCTCGCCTGCCCTTCTGCAGGGGACGTCTCAGG
AGGACCATGTGGACCTGTTGCTGTCCTGCACCCTTGTGCCTCACTCCCCTGAGCGGCCTG
AGGGGTCCCCAGGAGGGCCTGGCACCTCCCAGGGCAGGAAACGGCGGCAGACCAGCATGA
CAGATTTCTACCACTCCAAACGCCGGCTGATCTTCTCCAAGAGGAAGCCCTAACTAGGCT
GCTGGAAGCCTTGTCCTGCTGGAAACAAGGGGACACCCCCCCAGGCCTCTTCTACATCTT
TTGCCTTAGGCCTTTAGTTTGTGTGTCTTAATTATTATTTGTGTTTTAATTTAAACTCCT
CCTCATGTACATACCTGGCTTGCCACCCCCTCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGAGGTGTGAGCAGCTGCCAGAGTCGGTAGTTGGGAGATCCGGAGCTGGGCGCGGAT
TCTCGGAGACACCGACCCTCAGAAGAGCCACAGGCACCATGTCAGAGTCGACCAGGGATG
CACATCAGATCCCGCGCAGCAGCAAGGCCTGCCGCCGCCTCTTTGGCCCAGTGGACAGTG
AGCAGCTGCGCCAGGACTGCGATGCACTGATGGCCAGCTGCGTGCAAGAGGCCCGAGAGC
GATGGAACTTCGACTTCATCACTGAGACCCCCCTGGAGGGTGACTTCGCCTGGGAACGTG
TGCGAGGCCTTGGTCTGCCCAAGATCTACCTGCCCACAGGGCCCCGGGGGACCTGGGATG
ACCTGGGAGGGGGCAAGCGGCCAAGCACCTCGCCTGCCCTTCTGCAGGGGACGTCTCAGG
AGGACCATGTGGACCTGTTGCTGTCCTGCACCCTTGTGCCTCACTCCCCTGAGCGGCCTG
AGGGGTCCCCAGGAGGGCCTGGCACCTCCCAGGGCAGGAAACGGCGGCAGACCAGCATGA
CAGATTTCTACCACTCCAAACGCCGGCTGATCTTCTCCAAGAGGAAGCCCTAACTAGGCT
GCTGGAAGCCTTGTCCTGCTGGAAACAAGGGGACACCCCCCCAGGCCTCTTCTACATCTT
TTGCCTTAGGCCTTTAGTTTGTGTGTCTTAATTATTATTTGTGTTTTAATTTAAACTCCT
CCTCATGTACATACCTGGCTTGCCACCCCCTCCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CDN1A_FELCA

Coded protein: 1 entry(ies)

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Protein identifier


               
               CDN1A_FELCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               424-543, + strand, RNAz p=0.971362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-543, + strand, RNAz p=0.971362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               86-543, gnl|bosTau2|chr23 (9861035-9861483)
               

               
               86-543, gnl|Hg17|chr6 (36759844-36760301)
               

               
               86-543, gnl|Mm7|chr17 (27291782-27292224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-543, gnl|bosTau2|chr23 (9861035-9861483)
               

               
               86-543, gnl|Hg17|chr6 (36759844-36760301)
               

               
               86-543, gnl|Mm7|chr17 (27291782-27292224)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ill (0.175593)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

	86-543, gnl\|bosTau2\|chr23 (9861035-9861483)
	86-543, gnl\|Hg17\|chr6 (36759844-36760301)
	86-543, gnl\|Mm7\|chr17 (27291782-27292224)