Ss1.1-Pig4-TMW8026J20.5
|
AGCGCCGGAGACTGAGCAGCAGCGTGTGGGACTTTGTCAGCAGCTCAATGGCCTCCCCGA
AGAAGAAACTTCAAGGTCTCGTGGCCGCAACCATCACGCCGATGACTGAGCATGGAGAGA
TCAACTTTTCAGTCATCGGTCAGTATGTGGATTATCTCGTGGAAGTACAGGGAGTGAAGA
ATATCTTTGTGAATGGCACGACGGGAGAAGGCCTGTCCCTGAGCATCTCAGAGCGCTGCC
AGGTCGCAGAGGAGTGGGTGACAAAAGGAAGGAACAAGTTGGATCAAATAGTAATTCATG
TAGGAGCACTGAGCTTGAAGGAGTCTCAAGAACTGGCCCAACATGCAGCAAAAATAGGAG
CCGATGGCATTGCTGTCATTGCACCTTTCTTTCTCAAGCCCTGGAACAAAGATAACCTGA
TTAATTTCCTGAAGGAGGTGGCTGCTGCTGCCCCTGCTTTGCCGTTTTACTACTATCACA
TTCCTGCCTTGACAGGGGTAAAGATTCGTGCGGAAGAGTTGTTGGATGGGATTCAGGATA
AGATTCCCACCTTCCAAGGGCTGAAGTTCAGTGACACGGATCTCTTAGACTTCGGGCAGT
GTGTTGATCAGAATCACCAGCGACAGTTTGCTTTCCTGTTTGGGGTAGATGAGCAACTAT
TGAGTGCTCTGGTGATGGGAGCAACCGGAGCCGTGGGCAGTACGTATAACTACCTGGGAA
GAAAGACAAACCAGATGTTGGAGGCTTTTGAACGAAAGGACTTCTCTTCAGCCCTGAATC
ATCAGTTTTGCATTCAAAGATTTATCAACTTTGTGGTCAAACTAGGTTTTGGAGTGTCAC
AGACCAAAGCCATAATGACTCTTGTCTCTGGGATTCCAATGGGCCCACCCCGGCTTCCAC
TACAGAAAGCCTCCAGGGAGTTTACTGATAATGCAAAAGCTAAACTGAAGAGCCTGGATG
TCCTTTCTTTCACTGATTTAAAAGATGGAAACTTGGAAGCTTGTTAGCTAGTGCCTCTCT
ATCAAATAAGGGTGCGTACATTGAGATGTAATTCACCTTGAGTAGTGCATTCCTTCTCAA
GGACTTTTTAGATGAGCTTGAACTAAAGTTTCCTAGCAAATGAAATCTTTATGTCAATCA
ACAAGTATTTAAATACCTACTACGATCCTTTAAAAGTTTTCATTTGTGAAGGGGCAAAAA
TTCTAAAAGGGGTCAAGAGCCCTAAGTCATTCAGTGTTTCACAAAATTTTGTGAAGAAAT
TTTTGCTTCTATGGATGAGATAGAATCAAGAGGAAGATTGTAATTGATTAGCTCCATCTG
TCTTTGGGAGCTCCCATTATCTTGATTTCTGGTCCTTAATCCCAGTTCTTAATTTGAAAG
TTTTCTAATTTTAATCTGTTAGAATGTACTTTCATTTTAATAAATATTCATTTGGAATCT
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCGCCGGAGACTGAGCAGCAGCGTGTGGGACTTTGTCAGCAGCTCAATGGCCTCCCCGA
AGAAGAAACTTCAAGGTCTCGTGGCCGCAACCATCACGCCGATGACTGAGCATGGAGAGA
TCAACTTTTCAGTCATCGGTCAGTATGTGGATTATCTCGTGGAAGTACAGGGAGTGAAGA
ATATCTTTGTGAATGGCACGACGGGAGAAGGCCTGTCCCTGAGCATCTCAGAGCGCTGCC
AGGTCGCAGAGGAGTGGGTGACAAAAGGAAGGAACAAGTTGGATCAAATAGTAATTCATG
TAGGAGCACTGAGCTTGAAGGAGTCTCAAGAACTGGCCCAACATGCAGCAAAAATAGGAG
CCGATGGCATTGCTGTCATTGCACCTTTCTTTCTCAAGCCCTGGAACAAAGATAACCTGA
TTAATTTCCTGAAGGAGGTGGCTGCTGCTGCCCCTGCTTTGCCGTTTTACTACTATCACA
TTCCTGCCTTGACAGGGGTAAAGATTCGTGCGGAAGAGTTGTTGGATGGGATTCAGGATA
AGATTCCCACCTTCCAAGGGCTGAAGTTCAGTGACACGGATCTCTTAGACTTCGGGCAGT
GTGTTGATCAGAATCACCAGCGACAGTTTGCTTTCCTGTTTGGGGTAGATGAGCAACTAT
TGAGTGCTCTGGTGATGGGAGCAACCGGAGCCGTGGGCAGTACGTATAACTACCTGGGAA
GAAAGACAAACCAGATGTTGGAGGCTTTTGAACGAAAGGACTTCTCTTCAGCCCTGAATC
ATCAGTTTTGCATTCAAAGATTTATCAACTTTGTGGTCAAACTAGGTTTTGGAGTGTCAC
AGACCAAAGCCATAATGACTCTTGTCTCTGGGATTCCAATGGGCCCACCCCGGCTTCCAC
TACAGAAAGCCTCCAGGGAGTTTACTGATAATGCAAAAGCTAAACTGAAGAGCCTGGATG
TCCTTTCTTTCACTGATTTAAAAGATGGAAACTTGGAAGCTTGTTAGCTAGTGCCTCTCT
ATCAAATAAGGGTGCGTACATTGAGATGTAATTCACCTTGAGTAGTGCATTCCTTCTCAA
GGACTTTTTAGATGAGCTTGAACTAAAGTTTCCTAGCAAATGAAATCTTTATGTCAATCA
ACAAGTATTTAAATACCTACTACGATCCTTTAAAAGTTTTCATTTGTGAAGGGGCAAAAA
TTCTAAAAGGGGTCAAGAGCCCTAAGTCATTCAGTGTTTCACAAAATTTTGTGAAGAAAT
TTTTGCTTCTATGGATGAGATAGAATCAAGAGGAAGATTGTAATTGATTAGCTCCATCTG
TCTTTGGGAGCTCCCATTATCTTGATTTCTGGTCCTTAATCCCAGTTCTTAATTTGAAAG
TTTTCTAATTTTAATCTGTTAGAATGTACTTTCATTTTAATAAATATTCATTTGGAATCT
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
505-653, gnl|bosTau2|chr16 (45429819-45429671) |
|
505-653, gnl|canFam2|chr7 (19175018-19175267) |
|
505-653, gnl|danRer3|chr8 (13029315-13028942) |
|
505-653, gnl|dasNov1|scaffold_99046 (1565-1314) |
|
505-653, gnl|echTel1|scaffold_321639 (820-1072) |
|
505-653, gnl|galGal2|chr8 (7442456-7442727) |
|
505-653, gnl|hg17|chr1 (179519319-179519563) |
|
505-653, gnl|Hg17|chr1 (179519333-179519481) |
|
505-653, gnl|loxAfr1|scaffold_7586 (38355-38601) |
|
505-653, gnl|mm7|chr1 (153476904-153476666) |
|
505-653, gnl|Mm7|chr1 (153476889-153476741) |
|
505-653, gnl|monDom2|scaffold_16 (36578603-36578872) |
|
505-653, gnl|panTro1|chr1 (162046619-162046863) |
|
505-653, gnl|rheMac2|chr1 (187839899-187839651) |
|
505-653, gnl|rn3|chr13 (68551116-68550883) |
| |
|
822-1441, gnl|bosTau2|chr16 (45418451-45417845) |
|
822-1441, gnl|Hg17|chr1 (179529508-179530108) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
505-653, gnl|bosTau2|chr16 (45429819-45429671) |
|
505-653, gnl|canFam2|chr7 (19175018-19175267) |
|
505-653, gnl|danRer3|chr8 (13029315-13028942) |
|
505-653, gnl|dasNov1|scaffold_99046 (1565-1314) |
|
505-653, gnl|echTel1|scaffold_321639 (820-1072) |
|
505-653, gnl|galGal2|chr8 (7442456-7442727) |
|
505-653, gnl|hg17|chr1 (179519319-179519563) |
|
505-653, gnl|Hg17|chr1 (179519333-179519481) |
|
505-653, gnl|loxAfr1|scaffold_7586 (38355-38601) |
|
505-653, gnl|mm7|chr1 (153476904-153476666) |
|
505-653, gnl|Mm7|chr1 (153476889-153476741) |
|
505-653, gnl|monDom2|scaffold_16 (36578603-36578872) |
|
505-653, gnl|panTro1|chr1 (162046619-162046863) |
|
505-653, gnl|rheMac2|chr1 (187839899-187839651) |
|
505-653, gnl|rn3|chr13 (68551116-68550883) |
| |
|
822-1441, gnl|bosTau2|chr16 (45418451-45417845) |
|
822-1441, gnl|Hg17|chr1 (179529508-179530108) |
|
nje (0.33184) |
|
liv (0.292569) |
|
kid (0.259471) |
|
cty (0.20816) |
|
spl (0.143184) |
|
ute (0.132784) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
nje (0.33184) |
|
liv (0.292569) |
|
kid (0.259471) |
|
cty (0.20816) |
|
spl (0.143184) |
|
ute (0.132784) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
