Ss1.1-Pig4-TMW8026J23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTGTATGGCGGCTTCGTGGAGTGGCAGATGGGGCAGCGGGCTGACGGGAAGGACAGCA TCGCCCAGCAGGTGGCCCCAGAGTCGCACTGGCCAGAGCTCCGCGTCCTCATCCTCGTGG TGAGCGCCGAGAAGAAGCTGATGGGCAGCACGGCGGGCATGCAGACCAGCGTGGAGACGA GCGCCCTGCTCAGGTTCCGGGCCAAGGCGCTGGTGCCGGCGCGCATGGCCGAGATGGCCC GCTGCATCCGGGAGCGCGACTTCCAGGCCTTTGGCCAGCTGACCATGAAGGACAGCAACC AGTTCCACGCCACCTGCTTGGACACCTTCCCGCCCATCTCCTACCTCAGCGACACGTCGC AGCGGGTCATCCGCCTGGTGCACCGCTTCAACGCGCACCACGGCTGCACCAAGGTGGCCT ACTCGTTTGACGCGGGGCCCAACGCCGTGATCTTCGCCCTGGACGACACCGTGCCCGAGT TTGTGGCCGCCGTGCAGCACAGCTTCCCTCCGGAGCCCAACGGAGACAAGTTTCTGCAGG GGCTGCCCGTGGAGCCTGCCCTGCTCTCAGACGAGCTCAAAGCCGCACTGGGCACAGACC CCACCCCTGGCGGCATCAGATACATCATAGCCACTCAGGTGGGCCCTGGGCCTCAAGTCC TGGATGACCCTGGCGCTCACCTGCTGGGCCCCGATGGCCTGCCGAAGCTGGCCTCCTGAT GGCCTCCTCGACGGAGATGGACTGCCGCCAGGACAAGGGGCTGCTTGGCTGGGAGGGGGA CCTGGCGTGCCGGCCACCGGGCTTCCTGGGATTGGTGGATGGTGCCTGGCTCTGGGCCGG GCACCAAGCTGTGGTGGAGTGGGGGCCGTGGAGGGACGTCTACAGGTGCCTAGTCAGGAG CGGGCCCCAGCACCTCGCCTCACTGCACCTGCACACGGCGCTCTGCCGACACGGGAGCCT GGATCAGGAGACGAGACCTGGGCTCGGAGCTGCGAGTGCGTCTCCCAGTGAAAGGCCCTC TGGGCCACTCCCACTGCCCCAGGGCAGCAGCATGACCTGGGGTGGACTGGTGTCGCCCTC AGAGCTGAAGGATAGGTCTTGGGACGCTTCCTGGACGTGCCCTGCCGGACCCTGAGCTCA GGCCCCGCGCGTGCAGCATCCTCTGTGCCGAGAAGTGAAGTAAAGGCTGTGGAACTGGCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTGTATGGCGGCTTCGTGGAGTGGCAGATGGGGCAGCGGGCTGACGGGAAGGACAGCA TCGCCCAGCAGGTGGCCCCAGAGTCGCACTGGCCAGAGCTCCGCGTCCTCATCCTCGTGG TGAGCGCCGAGAAGAAGCTGATGGGCAGCACGGCGGGCATGCAGACCAGCGTGGAGACGA GCGCCCTGCTCAGGTTCCGGGCCAAGGCGCTGGTGCCGGCGCGCATGGCCGAGATGGCCC GCTGCATCCGGGAGCGCGACTTCCAGGCCTTTGGCCAGCTGACCATGAAGGACAGCAACC AGTTCCACGCCACCTGCTTGGACACCTTCCCGCCCATCTCCTACCTCAGCGACACGTCGC AGCGGGTCATCCGCCTGGTGCACCGCTTCAACGCGCACCACGGCTGCACCAAGGTGGCCT ACTCGTTTGACGCGGGGCCCAACGCCGTGATCTTCGCCCTGGACGACACCGTGCCCGAGT TTGTGGCCGCCGTGCAGCACAGCTTCCCTCCGGAGCCCAACGGAGACAAGTTTCTGCAGG GGCTGCCCGTGGAGCCTGCCCTGCTCTCAGACGAGCTCAAAGCCGCACTGGGCACAGACC CCACCCCTGGCGGCATCAGATACATCATAGCCACTCAGGTGGGCCCTGGGCCTCAAGTCC TGGATGACCCTGGCGCTCACCTGCTGGGCCCCGATGGCCTGCCGAAGCTGGCCTCCTGAT GGCCTCCTCGACGGAGATGGACTGCCGCCAGGACAAGGGGCTGCTTGGCTGGGAGGGGGA CCTGGCGTGCCGGCCACCGGGCTTCCTGGGATTGGTGGATGGTGCCTGGCTCTGGGCCGG GCACCAAGCTGTGGTGGAGTGGGGGCCGTGGAGGGACGTCTACAGGTGCCTAGTCAGGAG CGGGCCCCAGCACCTCGCCTCACTGCACCTGCACACGGCGCTCTGCCGACACGGGAGCCT GGATCAGGAGACGAGACCTGGGCTCGGAGCTGCGAGTGCGTCTCCCAGTGAAAGGCCCTC TGGGCCACTCCCACTGCCCCAGGGCAGCAGCATGACCTGGGGTGGACTGGTGTCGCCCTC AGAGCTGAAGGATAGGTCTTGGGACGCTTCCTGGACGTGCCCTGCCGGACCCTGAGCTCA GGCCCCGCGCGTGCAGCATCCTCTGTGCCGAGAAGTGAAGTAAAGGCTGTGGAACTGGCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 600-753, - strand, RNAz p=0.890293 | |
| 793-900, + strand, RNAz p=0.640911 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 600-753, - strand, RNAz p=0.890293 | |
| 793-900, + strand, RNAz p=0.640911 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-124, gnl|bosTau2|chr18 (12687066-12687189) | |
| 1-124, gnl|canFam2|chr5 (67684960-67684747) | |
| 1-124, gnl|danRer3|chr18 (29428711-29428503) | |
| 1-124, gnl|fr1|chrUn (290419671-290419458) | |
| 1-124, gnl|galGal2|chrUn (70009175-70009391) | |
| 1-124, gnl|hg17|chr16 (87250007-87250220) | |
| 1-124, gnl|Hg17|chr16 (87250132-87250009) | |
| 1-124, gnl|loxAfr1|scaffold_97267 (4611-4824) | |
| 1-124, gnl|mm7|chr8 (121079825-121080038) | |
| 1-124, gnl|Mm7|chr8 (121079950-121079827) | |
| 1-124, gnl|monDom2|scaffold_23 (8509017-8508804) | |
| 1-124, gnl|panTro1|chr18 (82250326-82250539) | |
| 1-124, gnl|rheMac2|chr20 (86811288-86811501) | |
| 1-124, gnl|rn3|chr19 (52731407-52731620) | |
| 1-124, gnl|tetNig1|chr5 (4958145-4958353) | |
| 1-124, gnl|xenTro1|scaffold_1104 (221565-221356) | |
| 194-414, gnl|bosTau2|chr18 (12687447-12687667) | |
| 194-414, gnl|canFam2|chr5 (67685640-67685391) | |
| 194-414, gnl|danRer3|chr18 (29435319-29435076) | |
| 194-414, gnl|dasNov1|scaffold_258099 (1188-1438) | |
| 194-414, gnl|fr1|chrUn (290420210-290419985) | |
| 194-414, gnl|galGal2|chrUn (70008581-70008836) | |
| 194-414, gnl|hg17|chr16 (87249091-87249345) | |
| 194-414, gnl|Hg17|chr16 (87249327-87249107) | |
| 194-414, gnl|loxAfr1|scaffold_9265 (48793-48548) | |
| 194-414, gnl|mm7|chr8 (121078998-121079249) | |
| 194-414, gnl|Mm7|chr8 (121079234-121079014) | |
| 194-414, gnl|monDom2|scaffold_23 (8510443-8510180) | |
| 194-414, gnl|panTro1|chr18 (82249411-82249635) | |
| 194-414, gnl|rheMac2|chr20 (86810377-86810631) | |
| 194-414, gnl|rn3|chr19 (52730582-52730831) | |
| 194-414, gnl|tetNig1|chr5 (4957617-4957840) | |
| 194-414, gnl|xenTro1|scaffold_1104 (225375-225141) | |
| 520-1003, gnl|bosTau2|chr1 (32973889-32973386) | |
| 625-990, gnl|bosTau2|chr18 (12689252-12689628) | |
| 625-990, gnl|Hg17|chr16 (87246525-87246177) | |
| 625-990, gnl|Mm7|chr8 (121076193-121075870) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-124, gnl|bosTau2|chr18 (12687066-12687189) | |
| 1-124, gnl|canFam2|chr5 (67684960-67684747) | |
| 1-124, gnl|danRer3|chr18 (29428711-29428503) | |
| 1-124, gnl|fr1|chrUn (290419671-290419458) | |
| 1-124, gnl|galGal2|chrUn (70009175-70009391) | |
| 1-124, gnl|hg17|chr16 (87250007-87250220) | |
| 1-124, gnl|Hg17|chr16 (87250132-87250009) | |
| 1-124, gnl|loxAfr1|scaffold_97267 (4611-4824) | |
| 1-124, gnl|mm7|chr8 (121079825-121080038) | |
| 1-124, gnl|Mm7|chr8 (121079950-121079827) | |
| 1-124, gnl|monDom2|scaffold_23 (8509017-8508804) | |
| 1-124, gnl|panTro1|chr18 (82250326-82250539) | |
| 1-124, gnl|rheMac2|chr20 (86811288-86811501) | |
| 1-124, gnl|rn3|chr19 (52731407-52731620) | |
| 1-124, gnl|tetNig1|chr5 (4958145-4958353) | |
| 1-124, gnl|xenTro1|scaffold_1104 (221565-221356) | |
| 194-414, gnl|bosTau2|chr18 (12687447-12687667) | |
| 194-414, gnl|canFam2|chr5 (67685640-67685391) | |
| 194-414, gnl|danRer3|chr18 (29435319-29435076) | |
| 194-414, gnl|dasNov1|scaffold_258099 (1188-1438) | |
| 194-414, gnl|fr1|chrUn (290420210-290419985) | |
| 194-414, gnl|galGal2|chrUn (70008581-70008836) | |
| 194-414, gnl|hg17|chr16 (87249091-87249345) | |
| 194-414, gnl|Hg17|chr16 (87249327-87249107) | |
| 194-414, gnl|loxAfr1|scaffold_9265 (48793-48548) | |
| 194-414, gnl|mm7|chr8 (121078998-121079249) | |
| 194-414, gnl|Mm7|chr8 (121079234-121079014) | |
| 194-414, gnl|monDom2|scaffold_23 (8510443-8510180) | |
| 194-414, gnl|panTro1|chr18 (82249411-82249635) | |
| 194-414, gnl|rheMac2|chr20 (86810377-86810631) | |
| 194-414, gnl|rn3|chr19 (52730582-52730831) | |
| 194-414, gnl|tetNig1|chr5 (4957617-4957840) | |
| 194-414, gnl|xenTro1|scaffold_1104 (225375-225141) | |
| 520-1003, gnl|bosTau2|chr1 (32973889-32973386) | |
| 625-990, gnl|bosTau2|chr18 (12689252-12689628) | |
| 625-990, gnl|Hg17|chr16 (87246525-87246177) | |
| 625-990, gnl|Mm7|chr8 (121076193-121075870) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cov (0.528611) | |
| eye (0.511509) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| eep (0.122564) | |
| ecc (0.115035) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| eye (0.511509) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| eep (0.122564) | |
| ecc (0.115035) |