Non-Coding RNA Search

Ss1.1-Pig4-TMW8026K01.3

Sequence:


               
               ATTAGCTGACTTGGTAATGATCTTTAATTTTTTTTTTAAATTTTTTGGCTGCACCTGCGG
TGAACAGAAGTTCCTGGGCAGGGATGGAACCTGCCCCATAGCAATGATTAGAGCTACAAC
AGTGACAGCGTGGATCCCCAGCCTGCTGAGCCACCAGGGAACTCCTGGTAATGATTATTA
GAGTAAACAATCCAGTTTGTTGATTATCCCAACAGATATGTTTTAGATTTGCAGCTTGGG
GCAGGTCACATGTCTTATTGGCAACACCCCCCCACACACACACCATTTTCAGATAGTACT
TGCCTTGTAACTTCTGTTGTTGAATTGAAATTATGAAAATGGTGACGTCATCCACAGTAT
TTGGGAGTTAACGGACAGGAAGGTGCCATTGTGTACAGAATAAAATGTATTTGGAGGTAT
CACCCTCTCATGCCTAATGCCAGTGTGGGCTTCCTGTTTGTACAATGACATTCGGCATTG
CCAGCAGAGCCGTTATCAGGCTGAGTTAAGGACTGACCACGTTTTCCGTCATGAGGAAAG
ATGTAGAAGTGAGGCATGAATTGCTGTGCATTGTTAGAAATAGAACATTTTTCTTGACAG
CTCTTTCTGCATAGGGAAAAGTTTGTAGAAAGAAGGAATTTGGATCTCAGAGTGCCAGGA
CAGTCATCAGAAATGTCAAGTAATAGCACTGCCCAGATTGAGCATAAAAGGCTTTGAATT
GTATGATCAGATTTATGCAATAAGTTTGATAATAGTTTTTTTTGACTCTTCAAGTATCCA
TCCTGCTTGAGAATAGTAAAGTTCTTGGCAGAAGTTGTGGATTTCAGTTGTAACAAATAT
GTTTTAAGTAGAGGAGCACATTCTGGTTTGGTAACTCCTTTTGAGAATGTAGAAGTGTCA
TGTTTCTAATTCTTCTGTTGTGTTTGTTGCCAGCTTGTCCTAAAGCAATAAAAAGTTTCT
TCTTTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGCTGACTTGGTAATGATCTTTAATTTTTTTTTTAAATTTTTTGGCTGCACCTGCGG
TGAACAGAAGTTCCTGGGCAGGGATGGAACCTGCCCCATAGCAATGATTAGAGCTACAAC
AGTGACAGCGTGGATCCCCAGCCTGCTGAGCCACCAGGGAACTCCTGGTAATGATTATTA
GAGTAAACAATCCAGTTTGTTGATTATCCCAACAGATATGTTTTAGATTTGCAGCTTGGG
GCAGGTCACATGTCTTATTGGCAACACCCCCCCACACACACACCATTTTCAGATAGTACT
TGCCTTGTAACTTCTGTTGTTGAATTGAAATTATGAAAATGGTGACGTCATCCACAGTAT
TTGGGAGTTAACGGACAGGAAGGTGCCATTGTGTACAGAATAAAATGTATTTGGAGGTAT
CACCCTCTCATGCCTAATGCCAGTGTGGGCTTCCTGTTTGTACAATGACATTCGGCATTG
CCAGCAGAGCCGTTATCAGGCTGAGTTAAGGACTGACCACGTTTTCCGTCATGAGGAAAG
ATGTAGAAGTGAGGCATGAATTGCTGTGCATTGTTAGAAATAGAACATTTTTCTTGACAG
CTCTTTCTGCATAGGGAAAAGTTTGTAGAAAGAAGGAATTTGGATCTCAGAGTGCCAGGA
CAGTCATCAGAAATGTCAAGTAATAGCACTGCCCAGATTGAGCATAAAAGGCTTTGAATT
GTATGATCAGATTTATGCAATAAGTTTGATAATAGTTTTTTTTGACTCTTCAAGTATCCA
TCCTGCTTGAGAATAGTAAAGTTCTTGGCAGAAGTTGTGGATTTCAGTTGTAACAAATAT
GTTTTAAGTAGAGGAGCACATTCTGGTTTGGTAACTCCTTTTGAGAATGTAGAAGTGTCA
TGTTTCTAATTCTTCTGTTGTGTTTGTTGCCAGCTTGTCCTAAAGCAATAAAAAGTTTCT
TCTTTTAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               690-966, gnl|bosTau2|chr2 (45987355-45987629)
               

               
               690-966, gnl|Hg17|chr2 (122240813-122241082)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               690-966, gnl|bosTau2|chr2 (45987355-45987629)
               

               
               690-966, gnl|Hg17|chr2 (122240813-122241082)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               sme (0.610874)
               

               
               col (0.390016)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               col (0.390016)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	690-966, gnl\|bosTau2\|chr2 (45987355-45987629)
	690-966, gnl\|Hg17\|chr2 (122240813-122241082)

	sme (0.610874)
	col (0.390016)
	fcc (0.197785)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	ste (0.135208)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	cty (0.10408)
	nbm (0.0993246)