Non-Coding RNA Search

Ss1.1-Pig4-TMW8026K11.3

Sequence:


               
               GTCCTGAGGACATCGGCCCGCCCATCCCGGAAGCCGATGAACTGCTGAATAAGTTCGTGT
GCAGGAACAACGGGGTCCTGTTTGAGAACCAGCTGCTGCAGATCGGCGTCAAGTCTGAGT
TCCGGCAGAACTTGGGCCGCATGTATCTCTTCTACGGCAACAAGACTTCGGTGCAGTTCC
AGAACTTCTCGCCCACTGTCGTCCACCCCGGAGACCTCCAGGCTCAGCTGGCCGTGCAGA
CCAAGCGGGTGGCCTCGCAGGTGGACGGCGGGGCTCAGGTGCAGCAGGTGCTCAACATCG
AGTGTCTGCGGGACTTCCTGACGCCCCCGCTCCTGTCCGTGCGCTTCCGGTATGGGGGCG
CCCCCCAGTCCCTCACCCTGAAGCTCCCGGTGACCATCAACAAGTTCTTCCAGCCGACGG
AGATGGCGGCCCAGGACTTCTTCCAGCGTTGGAAGCAGCTGAGCCTACCCCAACAGGAGG
CGCAGAAAATCTTCAAAGCCAACCACCCCATGGACGCGGAGGTCACTAAGGCCAAGCTCC
TGGGGTTTGGCTCTGCGCTCCTGGACAACGTGGATCCCAACCCTGAGAACTTCGTGGGGG
CTGGGATCATCCAGACTAAAGCCCTGCAGGTGGGCTGTCTGCTGCGGCTGGAGCCCAACG
CCCAGGCTCAGATGTACCGGCTGACCCTGCGCACCAGCAAGGAGCCCGTCTCCCGTCACC
TGTGTGAGCTGCTGGCCCAGCAGTTCTGAGCCCTGGACTGTGCCCCCGGAGATGTGGCCG
GTGCCGGGCAGCCCCCAGGACTGAGGCAGCTGTGGTGGATGGGGCAGTAAGGGGACCTCC
GCTGGTGACAGGGAAGACCCTGGGGTGGGGGGATGCCTAGGACCTTCCTCTGGCCTTTTG
TATTTTTATTTTTGTTCATCTGCTGCTGTTTACATTCTGGGGGGTAAGGGGGAGCCCCCT
TCCTCCCTTCCCCCCCCCCCGAAGCACAGAGGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTGAGGACATCGGCCCGCCCATCCCGGAAGCCGATGAACTGCTGAATAAGTTCGTGT
GCAGGAACAACGGGGTCCTGTTTGAGAACCAGCTGCTGCAGATCGGCGTCAAGTCTGAGT
TCCGGCAGAACTTGGGCCGCATGTATCTCTTCTACGGCAACAAGACTTCGGTGCAGTTCC
AGAACTTCTCGCCCACTGTCGTCCACCCCGGAGACCTCCAGGCTCAGCTGGCCGTGCAGA
CCAAGCGGGTGGCCTCGCAGGTGGACGGCGGGGCTCAGGTGCAGCAGGTGCTCAACATCG
AGTGTCTGCGGGACTTCCTGACGCCCCCGCTCCTGTCCGTGCGCTTCCGGTATGGGGGCG
CCCCCCAGTCCCTCACCCTGAAGCTCCCGGTGACCATCAACAAGTTCTTCCAGCCGACGG
AGATGGCGGCCCAGGACTTCTTCCAGCGTTGGAAGCAGCTGAGCCTACCCCAACAGGAGG
CGCAGAAAATCTTCAAAGCCAACCACCCCATGGACGCGGAGGTCACTAAGGCCAAGCTCC
TGGGGTTTGGCTCTGCGCTCCTGGACAACGTGGATCCCAACCCTGAGAACTTCGTGGGGG
CTGGGATCATCCAGACTAAAGCCCTGCAGGTGGGCTGTCTGCTGCGGCTGGAGCCCAACG
CCCAGGCTCAGATGTACCGGCTGACCCTGCGCACCAGCAAGGAGCCCGTCTCCCGTCACC
TGTGTGAGCTGCTGGCCCAGCAGTTCTGAGCCCTGGACTGTGCCCCCGGAGATGTGGCCG
GTGCCGGGCAGCCCCCAGGACTGAGGCAGCTGTGGTGGATGGGGCAGTAAGGGGACCTCC
GCTGGTGACAGGGAAGACCCTGGGGTGGGGGGATGCCTAGGACCTTCCTCTGGCCTTTTG
TATTTTTATTTTTGTTCATCTGCTGCTGTTTACATTCTGGGGGGTAAGGGGGAGCCCCCT
TCCTCCCTTCCCCCCCCCCCGAAGCACAGAGGGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21730586|pdb|1KYU|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21730586|pdb|1KYU|A

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               221-351, + strand, RNAz p=0.607002
               

               
               882-996, - strand, RNAz p=0.996248

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-351, + strand, RNAz p=0.607002
               

               
               882-996, - strand, RNAz p=0.996248

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025129, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025129, -

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               221-351, gnl|bosTau2|chr18 (48848922-48849052)
               

               
               221-351, gnl|canFam2|chr1 (109641509-109641352)
               

               
               221-351, gnl|danRer3|chr3 (27631669-27631517)
               

               
               221-351, gnl|echTel1|scaffold_164499 (5155-4999)
               

               
               221-351, gnl|fr1|chrUn (290396433-290396582)
               

               
               221-351, gnl|galGal2|chr5 (12588485-12588331)
               

               
               221-351, gnl|hg17|chr19 (55000493-55000650)
               

               
               221-351, gnl|Hg17|chr19 (55000517-55000647)
               

               
               221-351, gnl|loxAfr1|scaffold_118833 (126-283)
               

               
               221-351, gnl|mm7|chr7 (41076265-41076110)
               

               
               221-351, gnl|Mm7|chr7 (41076241-41076111)
               

               
               221-351, gnl|monDom2|scaffold_105 (3970300-3970140)
               

               
               221-351, gnl|panTro1|chr20 (52363363-52363520)
               

               
               221-351, gnl|rheMac2|chr19 (56088757-56088914)
               

               
               221-351, gnl|rn3|chr1 (95453219-95453064)
               

               
               221-351, gnl|tetNig1|chrUn_random (32459606-32459452)
               

               
               221-351, gnl|xenTro1|scaffold_1088 (207259-207406)
               


               
               670-996, gnl|bosTau2|chr18 (48850015-48850337)
               

               
               670-996, gnl|Hg17|chr19 (55001748-55002063)
               

               
               670-996, gnl|Mm7|chr7 (41075339-41075020)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-351, gnl|bosTau2|chr18 (48848922-48849052)
               

               
               221-351, gnl|canFam2|chr1 (109641509-109641352)
               

               
               221-351, gnl|danRer3|chr3 (27631669-27631517)
               

               
               221-351, gnl|echTel1|scaffold_164499 (5155-4999)
               

               
               221-351, gnl|fr1|chrUn (290396433-290396582)
               

               
               221-351, gnl|galGal2|chr5 (12588485-12588331)
               

               
               221-351, gnl|hg17|chr19 (55000493-55000650)
               

               
               221-351, gnl|Hg17|chr19 (55000517-55000647)
               

               
               221-351, gnl|loxAfr1|scaffold_118833 (126-283)
               

               
               221-351, gnl|mm7|chr7 (41076265-41076110)
               

               
               221-351, gnl|Mm7|chr7 (41076241-41076111)
               

               
               221-351, gnl|monDom2|scaffold_105 (3970300-3970140)
               

               
               221-351, gnl|panTro1|chr20 (52363363-52363520)
               

               
               221-351, gnl|rheMac2|chr19 (56088757-56088914)
               

               
               221-351, gnl|rn3|chr1 (95453219-95453064)
               

               
               221-351, gnl|tetNig1|chrUn_random (32459606-32459452)
               

               
               221-351, gnl|xenTro1|scaffold_1088 (207259-207406)
               


               
               670-996, gnl|bosTau2|chr18 (48850015-48850337)
               

               
               670-996, gnl|Hg17|chr19 (55001748-55002063)
               

               
               670-996, gnl|Mm7|chr7 (41075339-41075020)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	221-351, + strand, RNAz p=0.607002
	882-996, - strand, RNAz p=0.996248

	221-351, gnl\|bosTau2\|chr18 (48848922-48849052)
	221-351, gnl\|canFam2\|chr1 (109641509-109641352)
	221-351, gnl\|danRer3\|chr3 (27631669-27631517)
	221-351, gnl\|echTel1\|scaffold_164499 (5155-4999)
	221-351, gnl\|fr1\|chrUn (290396433-290396582)
	221-351, gnl\|galGal2\|chr5 (12588485-12588331)
	221-351, gnl\|hg17\|chr19 (55000493-55000650)
	221-351, gnl\|Hg17\|chr19 (55000517-55000647)
	221-351, gnl\|loxAfr1\|scaffold_118833 (126-283)
	221-351, gnl\|mm7\|chr7 (41076265-41076110)
	221-351, gnl\|Mm7\|chr7 (41076241-41076111)
	221-351, gnl\|monDom2\|scaffold_105 (3970300-3970140)
	221-351, gnl\|panTro1\|chr20 (52363363-52363520)
	221-351, gnl\|rheMac2\|chr19 (56088757-56088914)
	221-351, gnl\|rn3\|chr1 (95453219-95453064)
	221-351, gnl\|tetNig1\|chrUn_random (32459606-32459452)
	221-351, gnl\|xenTro1\|scaffold_1088 (207259-207406)

	670-996, gnl\|bosTau2\|chr18 (48850015-48850337)
	670-996, gnl\|Hg17\|chr19 (55001748-55002063)
	670-996, gnl\|Mm7\|chr7 (41075339-41075020)

	hyp (0.285673)
	fce (0.271592)
	pla (0.267344)
	eli (0.151814)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)