Non-Coding RNA Search

Ss1.1-Pig4-TMW8026K12.3

Sequence:


               
               CCATGATGGACGTGCCTTCCGTATCTGACCACTCTCAGCAGGTGGTGGACAGCGGCTTCA
GCGACCTGGGCAGCATCGAGAGCACCACGGAGAAGCTGTTGAAATGAGGGCCGTGAATTC
AGTTTCTGTTGGTTTGCAATTGTGTTTGGTTTTGTTTCTTTAAAAAAAAAAAAAAATTCA
ATCGGGCAGCTCCCTTTTCCACAAGCCTTTTTGTGACTTTAGAACTATTGTAGAGAAAAT
GTTCTTTTCTATATTATAAAAGAAATTATCCAACACAGTAATATTGGTACCTGTCATTTT
TTCACTTCTGTTTAAAAAAAAATGTATTTTTAGCAAGATAACTTGGGTAATCTTCTAAAA
AAGAAATTTAAAAACTCACTGTTAGTGACTTTGATGCCTTTTAAAATAAGAGCTTTTTCA
TTTCATTCCATCTTTAAAATTTTTTATCTTTGTTGTAGAATATTAAAAACTATTTTAAGA
AAGATAAAAATTCTCTTTAAAGAGATCTCTAGAGTGTGTGAATAGAGCTCCAGATGCCTC
TAAAAGCCGCATGTACAAATGAAGCTAAGTCTATTCCTGTCTGTTTATATTTGCTTTTCC
TGTTTTGTAACCTCTTTGTACTTTGTTCATGGTGACTTGTAAGCTAAGGGGAAGGGGTGC
CTAGATGCCTTTGTATTTCTCCATGTCACGCGCTCCTGGGCCAGCTGGTCTCCTTCCTCT
CCTGTATGTAATATCACTTTTTTTTCCCCTTTCTAGCAAGTACTTTCAAAAGAACTCTGT
ACATTTTAACATAAAAAAAAATAAATTATGTTGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGATGGACGTGCCTTCCGTATCTGACCACTCTCAGCAGGTGGTGGACAGCGGCTTCA
GCGACCTGGGCAGCATCGAGAGCACCACGGAGAAGCTGTTGAAATGAGGGCCGTGAATTC
AGTTTCTGTTGGTTTGCAATTGTGTTTGGTTTTGTTTCTTTAAAAAAAAAAAAAAATTCA
ATCGGGCAGCTCCCTTTTCCACAAGCCTTTTTGTGACTTTAGAACTATTGTAGAGAAAAT
GTTCTTTTCTATATTATAAAAGAAATTATCCAACACAGTAATATTGGTACCTGTCATTTT
TTCACTTCTGTTTAAAAAAAAATGTATTTTTAGCAAGATAACTTGGGTAATCTTCTAAAA
AAGAAATTTAAAAACTCACTGTTAGTGACTTTGATGCCTTTTAAAATAAGAGCTTTTTCA
TTTCATTCCATCTTTAAAATTTTTTATCTTTGTTGTAGAATATTAAAAACTATTTTAAGA
AAGATAAAAATTCTCTTTAAAGAGATCTCTAGAGTGTGTGAATAGAGCTCCAGATGCCTC
TAAAAGCCGCATGTACAAATGAAGCTAAGTCTATTCCTGTCTGTTTATATTTGCTTTTCC
TGTTTTGTAACCTCTTTGTACTTTGTTCATGGTGACTTGTAAGCTAAGGGGAAGGGGTGC
CTAGATGCCTTTGTATTTCTCCATGTCACGCGCTCCTGGGCCAGCTGGTCTCCTTCCTCT
CCTGTATGTAATATCACTTTTTTTTCCCCTTTCTAGCAAGTACTTTCAAAAGAACTCTGT
ACATTTTAACATAAAAAAAAATAAATTATGTTGAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               423-542, - strand, RNAz p=0.55883

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-542, - strand, RNAz p=0.55883

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               89-816, gnl|bosTau2|chr27 (23298014-23297264)
               

               
               89-816, gnl|Hg17|chr8 (41906881-41906163)
               

               
               89-816, gnl|Mm7|chr8 (21727846-21728567)
               


               
               530-721, gnl|bosTau2|chr18 (35594557-35594368)
               

               
               530-721, gnl|Hg17|chr8 (41906444-41906253)
               

               
               530-721, gnl|Mm7|chr8 (21728293-21728492)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-816, gnl|bosTau2|chr27 (23298014-23297264)
               

               
               89-816, gnl|Hg17|chr8 (41906881-41906163)
               

               
               89-816, gnl|Mm7|chr8 (21727846-21728567)
               


               
               530-721, gnl|bosTau2|chr18 (35594557-35594368)
               

               
               530-721, gnl|Hg17|chr8 (41906444-41906253)
               

               
               530-721, gnl|Mm7|chr8 (21728293-21728492)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nlu (0.191681)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	89-816, gnl\|bosTau2\|chr27 (23298014-23297264)
	89-816, gnl\|Hg17\|chr8 (41906881-41906163)
	89-816, gnl\|Mm7\|chr8 (21727846-21728567)

	530-721, gnl\|bosTau2\|chr18 (35594557-35594368)
	530-721, gnl\|Hg17\|chr8 (41906444-41906253)
	530-721, gnl\|Mm7\|chr8 (21728293-21728492)

	nlu (0.191681)
	mga (0.160205)
	lin (0.145603)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)