Ss1.1-Pig4-TMW8026K23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGCGAAGTTTTACGGATACGATAACTTACAGAGACAGCCGATTTTTACGACCCAGCAA GAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCGAGGAC CCAGACCACTTAAATCAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATGAGACCACAA GCAGCTCCTGGTAGACGAAGAGGAAGACAAACCTACAGTCGTTTCCAAACCCTAGAGCTG GAAAAGGAATTCCTTTTTAACCCTTATCTGACCAGGAAGAGAAGAATCGAGGTTTCCCAC GCCTTAGCCCTCACCGAGAGACAGGTAAAAATCTGGTTCCAGAACAGAAGAATGAAATGG AAGAAGGAGAACAACAAGGACAAATTCCCGGTTTCCCGACAGGAGGCAAAGGATGGGGAA ACCAAAAAGGAAGCCCAAGAGCTGGAGGAAGATCGAGCTGAAGGCCCGACAAATTAACTT CTACCTTTAAAGTTTTACCGCAGACTATTAAAACTAATGGTCAGCATATGCTGGTGGACA CCACCTATTTTCTTTGTTGGAAAGGACTTTACCTGTATTTCAAGCTACCTTCATGTCACT GCTCTTGAGGTTTCTGCGCTTTGAGAGGGATTTGGGTGTTGCAAAAAAAGTTTCTAGTGT CACATAGAAACAGCGGTTGAGCTGTCCTATGTAAGAGTAATTTGATACTGACCTTGTAGC TATATTTTTATAATGGTAGTTTTTAATGTCTGAGCTGATGATTTTGCCTCAACAACATAA ACTTCCTAATGATTAGCACTAAGTAATTGAATATAAAATGCTTTATTAATCAAACAAGTG CACTTGAACATTTTAAATCTTTTCTTTATGGTGAGTAAGTTAAAAGAAGTCTATTAATTT TTTTAAAAAAATTATGCCTGCAGAATATTTACTTTATATTATTTGATTAAAATGTATTAT TTATGGTTTTTCTTTCTGCTTTTATAATGAATGGTTCGGGTGCCTTTTGTTTACTCCTAA AAGATTTCTTTGAGTATTTTGTAAATGTAATATCTCTGGGAAAAAGTCTGGGCCAAATAT TCGAAAAGCACATGTTAGCTGAAGAGTGTAATGTGTAGTCCTGGCTCTGCAGCTTCCTTA AACTTGGGGGAAAATGTTGGGCCAGTGACAGAAGTTTCAGGACAATGTTAAAGTTGATGT TTAATAATTTTTCTATAGTTTCTACAAATTATGGCAATTTAATCATCTAAAGTGAATGAA TACTTGAAAAGCCTATTATAACTTTCACTTATATAGTTTTTACTCTGGCGAATCGCCTTG TGGAAAGCTTTTCATTGCTGAATTTGCTTTCGTTTTGAACCGAGCTTGGTATCGCCTGAA ATTGCTAGGTCTCTATGCTGTGGCAGTCGATGTGATTCTGTTTTTTGAGGAGGTGCCATA TTTATTTGTATTCCCTTCTCTCTGTTTGCATGCCCATTGTGAGCCAACTTGCTCTGCACA TCTCAGATATCGGTTGGTACGTCCTCTGCTGTTCTCCAGGTTGGCCTCACTTATTTGAAA CAAGCCCTGAGAGCAAATGCAGAAAAATCTGAGTGTAAACAACTGCTCCAGAACAAAGCT AGCTCCTTAATAAAAGAAATGAATCTTTAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGCGAAGTTTTACGGATACGATAACTTACAGAGACAGCCGATTTTTACGACCCAGCAA GAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGGTAATATTGGCGAGGAC CCAGACCACTTAAATCAGAGCTCGTCTCCTTCTCAAATGTTTCCCTGGATGAGACCACAA GCAGCTCCTGGTAGACGAAGAGGAAGACAAACCTACAGTCGTTTCCAAACCCTAGAGCTG GAAAAGGAATTCCTTTTTAACCCTTATCTGACCAGGAAGAGAAGAATCGAGGTTTCCCAC GCCTTAGCCCTCACCGAGAGACAGGTAAAAATCTGGTTCCAGAACAGAAGAATGAAATGG AAGAAGGAGAACAACAAGGACAAATTCCCGGTTTCCCGACAGGAGGCAAAGGATGGGGAA ACCAAAAAGGAAGCCCAAGAGCTGGAGGAAGATCGAGCTGAAGGCCCGACAAATTAACTT CTACCTTTAAAGTTTTACCGCAGACTATTAAAACTAATGGTCAGCATATGCTGGTGGACA CCACCTATTTTCTTTGTTGGAAAGGACTTTACCTGTATTTCAAGCTACCTTCATGTCACT GCTCTTGAGGTTTCTGCGCTTTGAGAGGGATTTGGGTGTTGCAAAAAAAGTTTCTAGTGT CACATAGAAACAGCGGTTGAGCTGTCCTATGTAAGAGTAATTTGATACTGACCTTGTAGC TATATTTTTATAATGGTAGTTTTTAATGTCTGAGCTGATGATTTTGCCTCAACAACATAA ACTTCCTAATGATTAGCACTAAGTAATTGAATATAAAATGCTTTATTAATCAAACAAGTG CACTTGAACATTTTAAATCTTTTCTTTATGGTGAGTAAGTTAAAAGAAGTCTATTAATTT TTTTAAAAAAATTATGCCTGCAGAATATTTACTTTATATTATTTGATTAAAATGTATTAT TTATGGTTTTTCTTTCTGCTTTTATAATGAATGGTTCGGGTGCCTTTTGTTTACTCCTAA AAGATTTCTTTGAGTATTTTGTAAATGTAATATCTCTGGGAAAAAGTCTGGGCCAAATAT TCGAAAAGCACATGTTAGCTGAAGAGTGTAATGTGTAGTCCTGGCTCTGCAGCTTCCTTA AACTTGGGGGAAAATGTTGGGCCAGTGACAGAAGTTTCAGGACAATGTTAAAGTTGATGT TTAATAATTTTTCTATAGTTTCTACAAATTATGGCAATTTAATCATCTAAAGTGAATGAA TACTTGAAAAGCCTATTATAACTTTCACTTATATAGTTTTTACTCTGGCGAATCGCCTTG TGGAAAGCTTTTCATTGCTGAATTTGCTTTCGTTTTGAACCGAGCTTGGTATCGCCTGAA ATTGCTAGGTCTCTATGCTGTGGCAGTCGATGTGATTCTGTTTTTTGAGGAGGTGCCATA TTTATTTGTATTCCCTTCTCTCTGTTTGCATGCCCATTGTGAGCCAACTTGCTCTGCACA TCTCAGATATCGGTTGGTACGTCCTCTGCTGTTCTCCAGGTTGGCCTCACTTATTTGAAA CAAGCCCTGAGAGCAAATGCAGAAAAATCTGAGTGTAAACAACTGCTCCAGAACAAAGCT AGCTCCTTAATAAAAGAAATGAATCTTTAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 2-179, gnl|bosTau2|chr5 (16774283-16774103) | |
| 2-179, gnl|canFam2|chr27 (4256203-4255990) | |
| 2-179, gnl|canFam2|chr9 (28203738-28204031) | |
| 2-179, gnl|danRer3|chr12 (26523987-26523721) | |
| 2-179, gnl|danRer3|chr23 (49555453-49555666) | |
| 2-179, gnl|dasNov1|scaffold_140926 (1022-1291) | |
| 2-179, gnl|dasNov1|scaffold_4404 (98478-98265) | |
| 2-179, gnl|echTel1|scaffold_311028 (82831-83036) | |
| 2-179, gnl|fr1|chrUn (163980283-163980010) | |
| 2-179, gnl|fr1|chrUn (93884159-93883946) | |
| 2-179, gnl|galGal2|chr27 (2228047-2227758) | |
| 2-179, gnl|galGal2|chr7 (17088964-17088754) | |
| 2-179, gnl|hg17|chr12 (52689566-52689779) | |
| 2-179, gnl|Hg17|chr12 (52689589-52689769) | |
| 2-179, gnl|hg17|chr17 (44046612-44046905) | |
| 2-179, gnl|loxAfr1|scaffold_12227 (39031-39244) | |
| 2-179, gnl|loxAfr1|scaffold_95422 (4771-4457) | |
| 2-179, gnl|mm7|chr11 (96392462-96392164) | |
| 2-179, gnl|mm7|chr15 (102977166-102977379) | |
| 2-179, gnl|Mm7|chr15 (102977189-102977369) | |
| 2-179, gnl|monDom2|scaffold_2 (76092132-76092338) | |
| 2-179, gnl|oryCun1|scaffold_120480 (768-495) | |
| 2-179, gnl|oryCun1|scaffold_120480 (557-770) | |
| 2-179, gnl|panTro1|chr10 (53938582-53938795) | |
| 2-179, gnl|rheMac2|chr11 (51107919-51108132) | |
| 2-179, gnl|rheMac2|chr16 (32843658-32843951) | |
| 2-179, gnl|rn3|chr10 (85028541-85028243) | |
| 2-179, gnl|rn3|chr7 (141833797-141834012) | |
| 2-179, gnl|tetNig1|chr9 (4228246-4228459) | |
| 2-179, gnl|tetNig1|chrUn_random (38129980-38130253) | |
| 2-179, gnl|xenTro1|scaffold_280 (414714-414927) | |
| 2-179, gnl|xenTro1|scaffold_329 (583483-583761) | |
| 180-389, gnl|bosTau2|chr19 (31230436-31230227) | |
| 180-389, gnl|Hg17|chr17 (44045872-44045663) | |
| 180-389, gnl|Mm7|chr11 (96393200-96393409) | |
| 1416-1648, gnl|bosTau2|chr2 (16990147-16989920) | |
| 1416-1648, gnl|Hg17|chr2 (176822694-176822922) | |
| 1416-1648, gnl|Mm7|chr2 (74551436-74551643) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-179, gnl|bosTau2|chr5 (16774283-16774103) | |
| 2-179, gnl|canFam2|chr27 (4256203-4255990) | |
| 2-179, gnl|canFam2|chr9 (28203738-28204031) | |
| 2-179, gnl|danRer3|chr12 (26523987-26523721) | |
| 2-179, gnl|danRer3|chr23 (49555453-49555666) | |
| 2-179, gnl|dasNov1|scaffold_140926 (1022-1291) | |
| 2-179, gnl|dasNov1|scaffold_4404 (98478-98265) | |
| 2-179, gnl|echTel1|scaffold_311028 (82831-83036) | |
| 2-179, gnl|fr1|chrUn (163980283-163980010) | |
| 2-179, gnl|fr1|chrUn (93884159-93883946) | |
| 2-179, gnl|galGal2|chr27 (2228047-2227758) | |
| 2-179, gnl|galGal2|chr7 (17088964-17088754) | |
| 2-179, gnl|hg17|chr12 (52689566-52689779) | |
| 2-179, gnl|Hg17|chr12 (52689589-52689769) | |
| 2-179, gnl|hg17|chr17 (44046612-44046905) | |
| 2-179, gnl|loxAfr1|scaffold_12227 (39031-39244) | |
| 2-179, gnl|loxAfr1|scaffold_95422 (4771-4457) | |
| 2-179, gnl|mm7|chr11 (96392462-96392164) | |
| 2-179, gnl|mm7|chr15 (102977166-102977379) | |
| 2-179, gnl|Mm7|chr15 (102977189-102977369) | |
| 2-179, gnl|monDom2|scaffold_2 (76092132-76092338) | |
| 2-179, gnl|oryCun1|scaffold_120480 (768-495) | |
| 2-179, gnl|oryCun1|scaffold_120480 (557-770) | |
| 2-179, gnl|panTro1|chr10 (53938582-53938795) | |
| 2-179, gnl|rheMac2|chr11 (51107919-51108132) | |
| 2-179, gnl|rheMac2|chr16 (32843658-32843951) | |
| 2-179, gnl|rn3|chr10 (85028541-85028243) | |
| 2-179, gnl|rn3|chr7 (141833797-141834012) | |
| 2-179, gnl|tetNig1|chr9 (4228246-4228459) | |
| 2-179, gnl|tetNig1|chrUn_random (38129980-38130253) | |
| 2-179, gnl|xenTro1|scaffold_280 (414714-414927) | |
| 2-179, gnl|xenTro1|scaffold_329 (583483-583761) | |
| 180-389, gnl|bosTau2|chr19 (31230436-31230227) | |
| 180-389, gnl|Hg17|chr17 (44045872-44045663) | |
| 180-389, gnl|Mm7|chr11 (96393200-96393409) | |
| 1416-1648, gnl|bosTau2|chr2 (16990147-16989920) | |
| 1416-1648, gnl|Hg17|chr2 (176822694-176822922) | |
| 1416-1648, gnl|Mm7|chr2 (74551436-74551643) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| tbr (0.770891) | |
| nms (0.427716) | |
| kid (0.389206) | |
| sug (0.381874) | |
| bla (0.373042) | |
| spc (0.340097) | |
| ldo (0.194005) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.770891) | |
| nms (0.427716) | |
| kid (0.389206) | |
| sug (0.381874) | |
| bla (0.373042) | |
| spc (0.340097) | |
| ldo (0.194005) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) |