Ss1.1-Pig4-TMW8026L08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAATACAAAGAAGACCCCAAAAGATGTCACGATGGCACCATTGAGTTCACCAGCATCG ACGCGCACAACGGTGTGGCCCCATCACGACGCGGTGATTTGGAAATCCTTGGTTATTGCA TGGTCCAGTGGCTTAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAACTATG TTAGAGATTCCAAAATTAGATACAGAGAAAATATTGCAGGTTTGATGGACAAATGTTTTC CTGAGAAAAACAAGCCAGATGAAATTGCTAAGTACATGGAAACAGTGAAATTACTGGATT ATGCTGAGAAACCTCTTTATCAAAAGTTACGAGAGATTCTTTTGCAAGGACTGAAAGCCA TAGGAAGTAAGGATGATGGCAAGCTGGACCTGGGCGCTGTGGAGAATGGAGATGTGAAAG GAAAAACAGTAGCAAAGAAGAGAAAGAAAGAAATTGAGGAAAGCGCAGGATCTAGCGTTG AAGACATGGACTGCTCAGAAACCCAGGCAGAAGAGGCCCCACAAACCCGTTCAAAAACCA GAAAGAGAATCCAGAAGTAAATCAAATACTGTGAACCAGTTGTTCTTTTCTTTCTTTCAT TTGACTTTTTCCTCTTTTTCTGTATTAAGTGTTTTATTTTCGTGTGAGTCTTGTTGGGGG GGTAACAATGAAGTACCTATGTCTTTGAAAAACAAATTTTTTTATTAAAATAAAGACTTT ATACAATTTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAATACAAAGAAGACCCCAAAAGATGTCACGATGGCACCATTGAGTTCACCAGCATCG ACGCGCACAACGGTGTGGCCCCATCACGACGCGGTGATTTGGAAATCCTTGGTTATTGCA TGGTCCAGTGGCTTAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGATCCTAACTATG TTAGAGATTCCAAAATTAGATACAGAGAAAATATTGCAGGTTTGATGGACAAATGTTTTC CTGAGAAAAACAAGCCAGATGAAATTGCTAAGTACATGGAAACAGTGAAATTACTGGATT ATGCTGAGAAACCTCTTTATCAAAAGTTACGAGAGATTCTTTTGCAAGGACTGAAAGCCA TAGGAAGTAAGGATGATGGCAAGCTGGACCTGGGCGCTGTGGAGAATGGAGATGTGAAAG GAAAAACAGTAGCAAAGAAGAGAAAGAAAGAAATTGAGGAAAGCGCAGGATCTAGCGTTG AAGACATGGACTGCTCAGAAACCCAGGCAGAAGAGGCCCCACAAACCCGTTCAAAAACCA GAAAGAGAATCCAGAAGTAAATCAAATACTGTGAACCAGTTGTTCTTTTCTTTCTTTCAT TTGACTTTTTCCTCTTTTTCTGTATTAAGTGTTTTATTTTCGTGTGAGTCTTGTTGGGGG GGTAACAATGAAGTACCTATGTCTTTGAAAAACAAATTTTTTTATTAAAATAAAGACTTT ATACAATTTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 78-211, gnl|bosTau2|chr5 (75323891-75323759) | |
| 78-211, gnl|canFam2|chr8 (68568733-68568881) | |
| 78-211, gnl|danRer3|chr7 (34158648-34158510) | |
| 78-211, gnl|dasNov1|scaffold_13715 (10429-10564) | |
| 78-211, gnl|echTel1|scaffold_280305 (2498-2356) | |
| 78-211, gnl|fr1|chrUn (38340364-38340502) | |
| 78-211, gnl|galGal2|chr5 (43439987-43440134) | |
| 78-211, gnl|hg17|chr14 (96392209-96392357) | |
| 78-211, gnl|Hg17|chr14 (96392219-96392351) | |
| 78-211, gnl|loxAfr1|scaffold_20057 (30823-30670) | |
| 78-211, gnl|mm7|chr12 (103556364-103556512) | |
| 78-211, gnl|Mm7|chr12 (103556374-103556506) | |
| 78-211, gnl|monDom2|scaffold_6 (75723110-75723252) | |
| 78-211, gnl|oryCun1|scaffold_184641 (10559-10452) | |
| 78-211, gnl|panTro1|chr15 (96882019-96882167) | |
| 78-211, gnl|rheMac2|chr7 (160099893-160100041) | |
| 78-211, gnl|rn3|chr6 (130236367-130236515) | |
| 78-211, gnl|tetNig1|chrUn_random (26232470-26232609) | |
| 78-211, gnl|xenTro1|scaffold_144 (934980-934829) | |
| 257-436, gnl|bosTau2|chr5 (75319778-75319599) | |
| 257-436, gnl|canFam2|chr8 (68573277-68573417) | |
| 257-436, gnl|dasNov1|scaffold_27113 (4483-4343) | |
| 257-436, gnl|echTel1|scaffold_280305 (594-454) | |
| 257-436, gnl|galGal2|chr5 (43441433-43441573) | |
| 257-436, gnl|hg17|chr14 (96396642-96396782) | |
| 257-436, gnl|Hg17|chr14 (96396645-96396824) | |
| 257-436, gnl|loxAfr1|scaffold_20057 (27695-27555) | |
| 257-436, gnl|mm7|chr12 (103560424-103560564) | |
| 257-436, gnl|Mm7|chr12 (103560427-103560606) | |
| 257-436, gnl|monDom2|scaffold_6 (75729314-75729454) | |
| 257-436, gnl|panTro1|chr15 (96886433-96886573) | |
| 257-436, gnl|rheMac2|chr7 (160104285-160104425) | |
| 257-436, gnl|rn3|chr6 (130240242-130240382) | |
| 257-436, gnl|tetNig1|chrUn_random (26233875-26234015) | |
| 257-436, gnl|xenTro1|scaffold_144 (934216-934076) | |
| 529-735, gnl|bosTau2|chr5 (75299610-75299386) | |
| 529-735, gnl|canFam2|chr8 (68590171-68590409) | |
| 529-735, gnl|dasNov1|scaffold_9273 (50066-49817) | |
| 529-735, gnl|galGal2|chr17 (3361048-3360869) | |
| 529-735, gnl|Hg17|chr14 (96417267-96417475) | |
| 529-735, gnl|hg17|chr9 (133651367-133651599) | |
| 529-735, gnl|loxAfr1|scaffold_20057 (6040-5809) | |
| 529-735, gnl|Mm7|chr12 (103572806-103573004) | |
| 529-735, gnl|panTro1|chr15 (96907004-96907240) | |
| 529-735, gnl|rheMac2|chr15 (4783601-4783365) | |
| 529-735, gnl|rn3|chr6 (130252741-130252968) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-211, gnl|bosTau2|chr5 (75323891-75323759) | |
| 78-211, gnl|canFam2|chr8 (68568733-68568881) | |
| 78-211, gnl|danRer3|chr7 (34158648-34158510) | |
| 78-211, gnl|dasNov1|scaffold_13715 (10429-10564) | |
| 78-211, gnl|echTel1|scaffold_280305 (2498-2356) | |
| 78-211, gnl|fr1|chrUn (38340364-38340502) | |
| 78-211, gnl|galGal2|chr5 (43439987-43440134) | |
| 78-211, gnl|hg17|chr14 (96392209-96392357) | |
| 78-211, gnl|Hg17|chr14 (96392219-96392351) | |
| 78-211, gnl|loxAfr1|scaffold_20057 (30823-30670) | |
| 78-211, gnl|mm7|chr12 (103556364-103556512) | |
| 78-211, gnl|Mm7|chr12 (103556374-103556506) | |
| 78-211, gnl|monDom2|scaffold_6 (75723110-75723252) | |
| 78-211, gnl|oryCun1|scaffold_184641 (10559-10452) | |
| 78-211, gnl|panTro1|chr15 (96882019-96882167) | |
| 78-211, gnl|rheMac2|chr7 (160099893-160100041) | |
| 78-211, gnl|rn3|chr6 (130236367-130236515) | |
| 78-211, gnl|tetNig1|chrUn_random (26232470-26232609) | |
| 78-211, gnl|xenTro1|scaffold_144 (934980-934829) | |
| 257-436, gnl|bosTau2|chr5 (75319778-75319599) | |
| 257-436, gnl|canFam2|chr8 (68573277-68573417) | |
| 257-436, gnl|dasNov1|scaffold_27113 (4483-4343) | |
| 257-436, gnl|echTel1|scaffold_280305 (594-454) | |
| 257-436, gnl|galGal2|chr5 (43441433-43441573) | |
| 257-436, gnl|hg17|chr14 (96396642-96396782) | |
| 257-436, gnl|Hg17|chr14 (96396645-96396824) | |
| 257-436, gnl|loxAfr1|scaffold_20057 (27695-27555) | |
| 257-436, gnl|mm7|chr12 (103560424-103560564) | |
| 257-436, gnl|Mm7|chr12 (103560427-103560606) | |
| 257-436, gnl|monDom2|scaffold_6 (75729314-75729454) | |
| 257-436, gnl|panTro1|chr15 (96886433-96886573) | |
| 257-436, gnl|rheMac2|chr7 (160104285-160104425) | |
| 257-436, gnl|rn3|chr6 (130240242-130240382) | |
| 257-436, gnl|tetNig1|chrUn_random (26233875-26234015) | |
| 257-436, gnl|xenTro1|scaffold_144 (934216-934076) | |
| 529-735, gnl|bosTau2|chr5 (75299610-75299386) | |
| 529-735, gnl|canFam2|chr8 (68590171-68590409) | |
| 529-735, gnl|dasNov1|scaffold_9273 (50066-49817) | |
| 529-735, gnl|galGal2|chr17 (3361048-3360869) | |
| 529-735, gnl|Hg17|chr14 (96417267-96417475) | |
| 529-735, gnl|hg17|chr9 (133651367-133651599) | |
| 529-735, gnl|loxAfr1|scaffold_20057 (6040-5809) | |
| 529-735, gnl|Mm7|chr12 (103572806-103573004) | |
| 529-735, gnl|panTro1|chr15 (96907004-96907240) | |
| 529-735, gnl|rheMac2|chr15 (4783601-4783365) | |
| 529-735, gnl|rn3|chr6 (130252741-130252968) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| thg (0.253582) | |
| mgm (0.180343) |