Non-Coding RNA Search

Ss1.1-Pig4-TMW8026L21.3.5

Sequence:


               
               GTTCTGCCCAGACCCTTCCCATCGTCCCCACTCACCCCTTCCCCTGTGTTGGAAGCAGTT
TTTATTTTAAGTTCTCTGAATGAAGAATAGCAACCTTTTATGTCTTCTTACGGTTCCCTC
TAAGATGACTCATCTCAAGGCCAGCAATCCACAGTCTCACCCTGGAAATCCTCAGTTTAG
CTTTAGCTGCACAAAAGGTAGTGTGTCCAGTGGTTAGAGGTGGGGTAGAAAGAGAGAAGG
TCATACCAGGCCAGGCTCTCACAAATTCTCTGGTTTCCACTCAGCCACTGAGCCAAGTCC
CTCCTCCTGGAGAAAAGCCTAGAACTGCCCCAAGAAGCAAAAGGGAAAACCCTCAAATTA
GCAAAGTCCGCTGGACATCCACATATTCCACCCAATATTCTACACAGAAAGGCTGGGAAA
GGGGATGGGAGCTGGGAGGATCTGGGGGAGGGAAAAAGAATGGAACAGGAACTCAGAAGG
TAGAACTTAGGACTCAGAACTTGTGTTGGAACTGCAGAATTTGGAATATAGAATCGAGAA
GATAGGAGTTCCCATTATGGCTCCGTGGAAACAAATCTGACTAGTATCCAAGAGGATGCA
GATTTGAACCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGTGTTTCCAGATGTGATGGTG
CTGTGGCGGAGATCACAGATGTGGCTGAGATCCCATGTGGCTGTGGCATAGGTCAGTAGC
TGTAGTTCTGATTCGACCCCTAGCCTGGGAACCTCCATATGCTACAGGTGTAGCCCTAGA
AAAAGACCAAAAAGAATTGGGAAGATTGAACAGAGGTGACGAGACCTCTTGGGGAGTAAG
TGTAATACAAGACAGTTGCAGAGAGGCCCATCTATTCCCCAGACAATGATGTTGAGAACT
TGAGTGGTTCTAGCCCTTCTGTGCAGGCAGCATCTCCTGCCCTCCTTACTGCCCTCTGCA
GCCAGAGCTACTGGGCTAGGTACCATATTTCCCTCACTCTGCATTCCTCTTCTCCCTCTT
CACATTCTATCAGCCCGACCCTCATTCTCCTGGGCCATTGGGTATGTGGAGTGGGGTCAG
TGACTTTGGGGGCTTCCTCAGTGACACCCACACCTCATGAACCTCTGGGTAGCTTGATTC
TGCCTCCCTTTCAGGAAAACTTATGCTGGTGTTGATGGAACCAATTAAAATATTTACTAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTGCCCAGACCCTTCCCATCGTCCCCACTCACCCCTTCCCCTGTGTTGGAAGCAGTT
TTTATTTTAAGTTCTCTGAATGAAGAATAGCAACCTTTTATGTCTTCTTACGGTTCCCTC
TAAGATGACTCATCTCAAGGCCAGCAATCCACAGTCTCACCCTGGAAATCCTCAGTTTAG
CTTTAGCTGCACAAAAGGTAGTGTGTCCAGTGGTTAGAGGTGGGGTAGAAAGAGAGAAGG
TCATACCAGGCCAGGCTCTCACAAATTCTCTGGTTTCCACTCAGCCACTGAGCCAAGTCC
CTCCTCCTGGAGAAAAGCCTAGAACTGCCCCAAGAAGCAAAAGGGAAAACCCTCAAATTA
GCAAAGTCCGCTGGACATCCACATATTCCACCCAATATTCTACACAGAAAGGCTGGGAAA
GGGGATGGGAGCTGGGAGGATCTGGGGGAGGGAAAAAGAATGGAACAGGAACTCAGAAGG
TAGAACTTAGGACTCAGAACTTGTGTTGGAACTGCAGAATTTGGAATATAGAATCGAGAA
GATAGGAGTTCCCATTATGGCTCCGTGGAAACAAATCTGACTAGTATCCAAGAGGATGCA
GATTTGAACCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGTGTTTCCAGATGTGATGGTG
CTGTGGCGGAGATCACAGATGTGGCTGAGATCCCATGTGGCTGTGGCATAGGTCAGTAGC
TGTAGTTCTGATTCGACCCCTAGCCTGGGAACCTCCATATGCTACAGGTGTAGCCCTAGA
AAAAGACCAAAAAGAATTGGGAAGATTGAACAGAGGTGACGAGACCTCTTGGGGAGTAAG
TGTAATACAAGACAGTTGCAGAGAGGCCCATCTATTCCCCAGACAATGATGTTGAGAACT
TGAGTGGTTCTAGCCCTTCTGTGCAGGCAGCATCTCCTGCCCTCCTTACTGCCCTCTGCA
GCCAGAGCTACTGGGCTAGGTACCATATTTCCCTCACTCTGCATTCCTCTTCTCCCTCTT
CACATTCTATCAGCCCGACCCTCATTCTCCTGGGCCATTGGGTATGTGGAGTGGGGTCAG
TGACTTTGGGGGCTTCCTCAGTGACACCCACACCTCATGAACCTCTGGGTAGCTTGATTC
TGCCTCCCTTTCAGGAAAACTTATGCTGGTGTTGATGGAACCAATTAAAATATTTACTAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-291, + strand, RNAz p=0.544326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-291, + strand, RNAz p=0.544326

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003634, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003634, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               112-545, gnl|bosTau2|chr17 (39490128-39489693)
               

               
               112-545, gnl|canFam2|chr26 (25816404-25816817)
               

               
               112-545, gnl|dasNov1|scaffold_496 (118497-118891)
               

               
               112-545, gnl|echTel1|scaffold_295783 (3080-2728)
               

               
               112-545, gnl|hg17|chr22 (28275759-28276201)
               

               
               112-545, gnl|Hg17|chr22 (28276200-28275760)
               

               
               112-545, gnl|loxAfr1|scaffold_13571 (91296-90879)
               

               
               112-545, gnl|mm7|chr11 (4845853-4845443)
               

               
               112-545, gnl|Mm7|chr11 (4845456-4845850)
               

               
               112-545, gnl|oryCun1|scaffold_201587 (106907-107272)
               

               
               112-545, gnl|panTro1|chr23 (28368970-28369412)
               

               
               112-545, gnl|rheMac2|chr10 (73381442-73381879)
               

               
               112-545, gnl|rn3|chr14 (85575333-85574942)
               


               
               793-1203, gnl|bosTau2|chr17 (39489708-39489288)
               

               
               793-1203, gnl|Hg17|chr22 (28275774-28275351)
               

               
               793-1203, gnl|Mm7|chr11 (4845835-4846206)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-545, gnl|bosTau2|chr17 (39490128-39489693)
               

               
               112-545, gnl|canFam2|chr26 (25816404-25816817)
               

               
               112-545, gnl|dasNov1|scaffold_496 (118497-118891)
               

               
               112-545, gnl|echTel1|scaffold_295783 (3080-2728)
               

               
               112-545, gnl|hg17|chr22 (28275759-28276201)
               

               
               112-545, gnl|Hg17|chr22 (28276200-28275760)
               

               
               112-545, gnl|loxAfr1|scaffold_13571 (91296-90879)
               

               
               112-545, gnl|mm7|chr11 (4845853-4845443)
               

               
               112-545, gnl|Mm7|chr11 (4845456-4845850)
               

               
               112-545, gnl|oryCun1|scaffold_201587 (106907-107272)
               

               
               112-545, gnl|panTro1|chr23 (28368970-28369412)
               

               
               112-545, gnl|rheMac2|chr10 (73381442-73381879)
               

               
               112-545, gnl|rn3|chr14 (85575333-85574942)
               


               
               793-1203, gnl|bosTau2|chr17 (39489708-39489288)
               

               
               793-1203, gnl|Hg17|chr22 (28275774-28275351)
               

               
               793-1203, gnl|Mm7|chr11 (4845835-4846206)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fli (0.202881)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	112-545, gnl\|bosTau2\|chr17 (39490128-39489693)
	112-545, gnl\|canFam2\|chr26 (25816404-25816817)
	112-545, gnl\|dasNov1\|scaffold_496 (118497-118891)
	112-545, gnl\|echTel1\|scaffold_295783 (3080-2728)
	112-545, gnl\|hg17\|chr22 (28275759-28276201)
	112-545, gnl\|Hg17\|chr22 (28276200-28275760)
	112-545, gnl\|loxAfr1\|scaffold_13571 (91296-90879)
	112-545, gnl\|mm7\|chr11 (4845853-4845443)
	112-545, gnl\|Mm7\|chr11 (4845456-4845850)
	112-545, gnl\|oryCun1\|scaffold_201587 (106907-107272)
	112-545, gnl\|panTro1\|chr23 (28368970-28369412)
	112-545, gnl\|rheMac2\|chr10 (73381442-73381879)
	112-545, gnl\|rn3\|chr14 (85575333-85574942)

	793-1203, gnl\|bosTau2\|chr17 (39489708-39489288)
	793-1203, gnl\|Hg17\|chr22 (28275774-28275351)
	793-1203, gnl\|Mm7\|chr11 (4845835-4846206)

	fli (0.202881)
	fhi (0.169578)
	fat (0.147427)
	hyp (0.142837)
	lnt (0.142308)
	eep (0.122564)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)