Non-Coding RNA Search

Ss1.1-Pig4-TMW8026M04.5

Sequence:


               
               ATCATATTAGCAGGAGAAAAATGAGTTGGTTCTGTTGTGCTTGAGTCTTAAGAAAAGTGC
CCATAGTTTAGTGACAATTTCCGAAGGCGTTAGTACCACCTGTATTTCAAAATGGGGGAC
CCAAACTCCCGGAAGAAACAAGCTCTGAACAGACTACGTGCTCAGCTTAGAAAGAAAAAA
GAATCTCTAGCTGACCAGTTTGACTTCAAGATGTATATTGCCTTTGTATTCAAGGAGAAG
AAGAAAAAATCAGCACTTTTTGAAGTGTCTGAGGTTATACCAGTCATGACAAATAATTAT
GAAGAAAATATCCTGAAAGGTGTGCGAGATTCCAGCTATTCCTTGGAAAGTTCCATAGAG
CTTTTACAGAAGGATGTGGTACAGCTCCATGCTCCTCGATACCAGTCTATGAGAAGGGAT
GTAATTGGCTGTACTCAGGAGATGGATTTCATTCTTTGGCCACGGAATGATATTGAGAAA
ATTGTCTGTCTCCTGTTTTCTAGGTGGAAGGAATCTGATGAGCCTTTTAGGCCTGTTCAG
GTATTTTATTTCTGAAATAAGTGTGGTGAACATGTAAATAAATGAAAACTCGTAGGAGAG
GATCTAATTTACGAAGTTCTTTGGGAATATACTTTCTAATAAATTTTACTTCATGATTTC
CTCCTGTCTTTGACTATTGTAATGCAAGAAGAGAAAGCATTTGGATTGTAGAATCTCTTT
AAGAATGAGGTGATTCTAACTAGACCCAGTATGTCTTTGAAATTATGGTCAAAGAAAGAT
CTTTTAAGGTAGGCATTTGTTGATTTATAAAGGGCCCTTGGATGAACTTGAGGAAAATTT
CTTCCCCTGCATCACACACTCCTAAAATACTTTGTACCTAACCTTGGTTCTCAAAGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATATTAGCAGGAGAAAAATGAGTTGGTTCTGTTGTGCTTGAGTCTTAAGAAAAGTGC
CCATAGTTTAGTGACAATTTCCGAAGGCGTTAGTACCACCTGTATTTCAAAATGGGGGAC
CCAAACTCCCGGAAGAAACAAGCTCTGAACAGACTACGTGCTCAGCTTAGAAAGAAAAAA
GAATCTCTAGCTGACCAGTTTGACTTCAAGATGTATATTGCCTTTGTATTCAAGGAGAAG
AAGAAAAAATCAGCACTTTTTGAAGTGTCTGAGGTTATACCAGTCATGACAAATAATTAT
GAAGAAAATATCCTGAAAGGTGTGCGAGATTCCAGCTATTCCTTGGAAAGTTCCATAGAG
CTTTTACAGAAGGATGTGGTACAGCTCCATGCTCCTCGATACCAGTCTATGAGAAGGGAT
GTAATTGGCTGTACTCAGGAGATGGATTTCATTCTTTGGCCACGGAATGATATTGAGAAA
ATTGTCTGTCTCCTGTTTTCTAGGTGGAAGGAATCTGATGAGCCTTTTAGGCCTGTTCAG
GTATTTTATTTCTGAAATAAGTGTGGTGAACATGTAAATAAATGAAAACTCGTAGGAGAG
GATCTAATTTACGAAGTTCTTTGGGAATATACTTTCTAATAAATTTTACTTCATGATTTC
CTCCTGTCTTTGACTATTGTAATGCAAGAAGAGAAAGCATTTGGATTGTAGAATCTCTTT
AAGAATGAGGTGATTCTAACTAGACCCAGTATGTCTTTGAAATTATGGTCAAAGAAAGAT
CTTTTAAGGTAGGCATTTGTTGATTTATAAAGGGCCCTTGGATGAACTTGAGGAAAATTT
CTTCCCCTGCATCACACACTCCTAAAATACTTTGTACCTAACCTTGGTTCTCAAAGGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878063|ref|XP_585059.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878063|ref|XP_585059.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-240, gnl|bosTau2|chr23 (26577503-26577262)
               

               
               1-240, gnl|Hg17|chr6 (24826988-24826747)
               

               
               1-240, gnl|Mm7|chr13 (24169070-24169311)
               


               
               417-796, gnl|bosTau2|chr23 (26574039-26573666)
               

               
               417-796, gnl|Hg17|chr6 (24822648-24822276)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr23 (26577503-26577262)
               

               
               1-240, gnl|Hg17|chr6 (24826988-24826747)
               

               
               1-240, gnl|Mm7|chr13 (24169070-24169311)
               


               
               417-796, gnl|bosTau2|chr23 (26574039-26573666)
               

               
               417-796, gnl|Hg17|chr6 (24822648-24822276)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-240, gnl\|bosTau2\|chr23 (26577503-26577262)
	1-240, gnl\|Hg17\|chr6 (24826988-24826747)
	1-240, gnl\|Mm7\|chr13 (24169070-24169311)

	417-796, gnl\|bosTau2\|chr23 (26574039-26573666)
	417-796, gnl\|Hg17\|chr6 (24822648-24822276)