Ss1.1-Pig4-TMW8026M06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTTTTATGTTATTTTTTGAAGTTCTGTAGGTGGGAACAACTAAAAGAAAAATATCCA GAGGTTGATTCATATGAAATAATAGAATCCTTCAATGTTGCTGCAAAGGAGGTTTTTAGA AGTATTATTTTGAATGAATACAAAAGGTGTGATGGTCGTGATTTGACTTCACTTAGGAAT ATAAAATGTGAGGTAGATATGTTTAAAATTCTTCATGGATCATCATTATTTCAAAGAGGA CAAACACAGGTGCTTTGTACTGTTACATTTGATTCATTAGAATCCAGTATTAAGTCAGAC CGGATTATAACAGCTATAGATGGGATAAAGGATAAAAACTTCATGCTGCACTATGAGTTT CCTCCTTATGCAACTAATGAAATCGGCAAAGTCACAGGTGTAAATAGAAGAGAACTTGGG CACGGGGCTCTTGCTGAGAAAGCTTTGTATCCTGTTATCCCTAAAGATTTTCCTTTCACC ATAAGAGTCACATCTGAAGTACTAGAGTCAAATGGGTCATCTTCTATGGCATCTGCATGT GGTGGAAGTTTAGCATTAATGGATGCAGGAGTTCCAATTTCATCTGCTGTTGCAGGTGTG GCAATAGGATTGGTCACCAAAAACAATCCTGACAAGGGTGAAATAGAAGATTATCGTTTG TTGACAGATATTCTGGGGATTGAAGATTACCATGGTGACATGGATTTCAAAATAGCCGGC ACTGCTAAGGGAATAACTGCATTACAGGCTGATATTAAACTACCTGGAATACCAATAAAA ATTGTAATGGAGGCCATTCAGCAAGCCTCAGTGGCAAAGAAGGAGATATTACAGATTATG AACAAAACAATTCCAAAACCTCGAGCATCTAGAAAAGAAAATGGACCTGTTGTAGAAACT GTTCAGGTTCCATTATCAAAACGAGCAAAATTTGTTGGACCAGGTGGCTATCATTTAAAA AAACTTCAGGCTGAAACAGGAGTAACTATTAGTCAGGTGGATGAAGAAACATTTTCCATA TTTGCACCAACACCCAGTGCTATGCATGAAGCAAAAGACTTCATTACTGAAATCTGCAAA GATGATCAGGAGCAGCAATTAGAATTTGGAGCAGTGTACACCGCTACAATAACTGAAATC AGAGACACTGGAGTAATGGTTAAACTTTATCCAAATATGACTGCAGTACTACTTCATAAC ACACAACTTGATCAACGAAAGATTAAACATCCCACTGCTTTAGGATTAGAAGTTGGCCAA GAAATTCAGGTGAAATATTTTGGACGTGATCCAGCTGATGGAAGGATGCGGCTTTCTCGT AAAGTGCTCCAGTCTCCAGCTACAACTATTGTCAAAACTTTAAATGACAGAAACAGTATT GTAATGGGAGAATCTATTTCACAGTCATCATCTAATTCTTCTCAGTGACTTTTTTTTTTT AAGAATTCTAGAATGATATTCTATGGAGCAAAATTTCAGTAGTATCTTCTAATGTATAGA TTTATATATAATATAAATATATTCTAATGATTTGTATTACAGTGCTCACTTTACATGTTC CATTTTTTTTTAACCACTTCCAGTTACCTATATTATTTACATCATAAATCAATAAATATT TATTATTAAAAGTAAACCATTTATACATCTTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTTTTATGTTATTTTTTGAAGTTCTGTAGGTGGGAACAACTAAAAGAAAAATATCCA GAGGTTGATTCATATGAAATAATAGAATCCTTCAATGTTGCTGCAAAGGAGGTTTTTAGA AGTATTATTTTGAATGAATACAAAAGGTGTGATGGTCGTGATTTGACTTCACTTAGGAAT ATAAAATGTGAGGTAGATATGTTTAAAATTCTTCATGGATCATCATTATTTCAAAGAGGA CAAACACAGGTGCTTTGTACTGTTACATTTGATTCATTAGAATCCAGTATTAAGTCAGAC CGGATTATAACAGCTATAGATGGGATAAAGGATAAAAACTTCATGCTGCACTATGAGTTT CCTCCTTATGCAACTAATGAAATCGGCAAAGTCACAGGTGTAAATAGAAGAGAACTTGGG CACGGGGCTCTTGCTGAGAAAGCTTTGTATCCTGTTATCCCTAAAGATTTTCCTTTCACC ATAAGAGTCACATCTGAAGTACTAGAGTCAAATGGGTCATCTTCTATGGCATCTGCATGT GGTGGAAGTTTAGCATTAATGGATGCAGGAGTTCCAATTTCATCTGCTGTTGCAGGTGTG GCAATAGGATTGGTCACCAAAAACAATCCTGACAAGGGTGAAATAGAAGATTATCGTTTG TTGACAGATATTCTGGGGATTGAAGATTACCATGGTGACATGGATTTCAAAATAGCCGGC ACTGCTAAGGGAATAACTGCATTACAGGCTGATATTAAACTACCTGGAATACCAATAAAA ATTGTAATGGAGGCCATTCAGCAAGCCTCAGTGGCAAAGAAGGAGATATTACAGATTATG AACAAAACAATTCCAAAACCTCGAGCATCTAGAAAAGAAAATGGACCTGTTGTAGAAACT GTTCAGGTTCCATTATCAAAACGAGCAAAATTTGTTGGACCAGGTGGCTATCATTTAAAA AAACTTCAGGCTGAAACAGGAGTAACTATTAGTCAGGTGGATGAAGAAACATTTTCCATA TTTGCACCAACACCCAGTGCTATGCATGAAGCAAAAGACTTCATTACTGAAATCTGCAAA GATGATCAGGAGCAGCAATTAGAATTTGGAGCAGTGTACACCGCTACAATAACTGAAATC AGAGACACTGGAGTAATGGTTAAACTTTATCCAAATATGACTGCAGTACTACTTCATAAC ACACAACTTGATCAACGAAAGATTAAACATCCCACTGCTTTAGGATTAGAAGTTGGCCAA GAAATTCAGGTGAAATATTTTGGACGTGATCCAGCTGATGGAAGGATGCGGCTTTCTCGT AAAGTGCTCCAGTCTCCAGCTACAACTATTGTCAAAACTTTAAATGACAGAAACAGTATT GTAATGGGAGAATCTATTTCACAGTCATCATCTAATTCTTCTCAGTGACTTTTTTTTTTT AAGAATTCTAGAATGATATTCTATGGAGCAAAATTTCAGTAGTATCTTCTAATGTATAGA TTTATATATAATATAAATATATTCTAATGATTTGTATTACAGTGCTCACTTTACATGTTC CATTTTTTTTTAACCACTTCCAGTTACCTATATTATTTACATCATAAATCAATAAATATT TATTATTAAAAGTAAACCATTTATACATCTTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 566-676, + strand, RNAz p=0.887739 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 566-676, + strand, RNAz p=0.887739 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 45-527, gnl|bosTau2|chr8 (49960599-49960141) | |
| 45-527, gnl|Hg17|chr7 (121077914-121077446) | |
| 45-527, gnl|Mm7|chr6 (22782705-22782241) | |
| 124-251, gnl|bosTau2|chr11 (20682326-20682200) | |
| 124-251, gnl|canFam2|chr10 (59649442-59649540) | |
| 124-251, gnl|canFam2|chr10 (59649437-59649545) | |
| 124-251, gnl|dasNov1|scaffold_10797 (283-391) | |
| 124-251, gnl|dasNov1|scaffold_17059 (80223-80324) | |
| 124-251, gnl|echTel1|scaffold_282379 (85828-85930) | |
| 124-251, gnl|echTel1|scaffold_324791 (48038-48146) | |
| 124-251, gnl|fr1|chrUn (46931908-46932037) | |
| 124-251, gnl|fr1|chrUn (46931903-46932011) | |
| 124-251, gnl|galGal2|chr3 (2200766-2200664) | |
| 124-251, gnl|galGal2|chr3 (2200771-2200663) | |
| 124-251, gnl|hg17|chr2 (55805775-55805883) | |
| 124-251, gnl|Hg17|chr2 (55805901-55805775) | |
| 124-251, gnl|hg17|chr3 (3999836-3999938) | |
| 124-251, gnl|loxAfr1|scaffold_26204 (50719-50827) | |
| 124-251, gnl|loxAfr1|scaffold_98242 (3629-3728) | |
| 124-251, gnl|mm7|chr11 (29093771-29093669) | |
| 124-251, gnl|mm7|chr11 (29093776-29093668) | |
| 124-251, gnl|Mm7|chr11 (29093653-29093774) | |
| 124-251, gnl|monDom2|scaffold_1 (18652553-18652653) | |
| 124-251, gnl|monDom2|scaffold_1 (18652548-18652656) | |
| 124-251, gnl|oryCun1|scaffold_170954 (3255-3153) | |
| 124-251, gnl|oryCun1|scaffold_210724 (108013-108121) | |
| 124-251, gnl|panTro1|chr12 (57961636-57961744) | |
| 124-251, gnl|panTro1|chr2 (4108605-4108707) | |
| 124-251, gnl|rheMac2|chr13 (55989234-55989342) | |
| 124-251, gnl|rheMac2|chr2 (57045024-57044923) | |
| 124-251, gnl|rn3|chr14 (110167028-110166930) | |
| 124-251, gnl|rn3|chr14 (110167033-110166925) | |
| 124-251, gnl|tetNig1|chr17 (10719823-10719626) | |
| 124-251, gnl|tetNig1|chr17 (10719828-10719720) | |
| 124-251, gnl|xenTro1|scaffold_392 (345997-346099) | |
| 124-251, gnl|xenTro1|scaffold_392 (345992-346100) | |
| 560-715, gnl|bosTau2|chr8 (49959902-49959749) | |
| 560-715, gnl|Hg17|chr7 (121077211-121077059) | |
| 566-676, gnl|bosTau2|chr11 (20667691-20667581) | |
| 566-676, gnl|canFam2|chr10 (59635965-59636071) | |
| 566-676, gnl|canFam2|chr10 (59635952-59636078) | |
| 566-676, gnl|dasNov1|scaffold_17059 (79530-79636) | |
| 566-676, gnl|dasNov1|scaffold_19557 (3281-3407) | |
| 566-676, gnl|echTel1|scaffold_282379 (85423-85529) | |
| 566-676, gnl|echTel1|scaffold_288194 (2710-2836) | |
| 566-676, gnl|fr1|chrUn (46930707-46930816) | |
| 566-676, gnl|fr1|chrUn (46930693-46930823) | |
| 566-676, gnl|galGal2|chr3 (2205194-2205088) | |
| 566-676, gnl|galGal2|chr3 (2205201-2205080) | |
| 566-676, gnl|hg17|chr2 (55786120-55786246) | |
| 566-676, gnl|Hg17|chr2 (55786242-55786132) | |
| 566-676, gnl|hg17|chr3 (3999407-3999513) | |
| 566-676, gnl|loxAfr1|scaffold_26204 (36665-36771) | |
| 566-676, gnl|loxAfr1|scaffold_26204 (36652-36778) | |
| 566-676, gnl|mm7|chr11 (29105344-29105240) | |
| 566-676, gnl|mm7|chr11 (29105359-29105233) | |
| 566-676, gnl|Mm7|chr11 (29105235-29105345) | |
| 566-676, gnl|monDom2|scaffold_1 (18637754-18637883) | |
| 566-676, gnl|oryCun1|scaffold_170954 (3675-3569) | |
| 566-676, gnl|oryCun1|scaffold_211702 (39379-39505) | |
| 566-676, gnl|panTro1|chr12 (57943910-57944036) | |
| 566-676, gnl|panTro1|chr2 (4108175-4108281) | |
| 566-676, gnl|rheMac2|chr13 (55970514-55970640) | |
| 566-676, gnl|rheMac2|chr2 (57045439-57045333) | |
| 566-676, gnl|rn3|chr14 (110177354-110177250) | |
| 566-676, gnl|rn3|chr14 (110177369-110177243) | |
| 566-676, gnl|tetNig1|chr17 (10721150-10721040) | |
| 566-676, gnl|tetNig1|chr17 (10721156-10721033) | |
| 566-676, gnl|xenTro1|scaffold_392 (337467-337576) | |
| 566-676, gnl|xenTro1|scaffold_392 (337456-337583) | |
| 975-1086, gnl|bosTau2|chr11 (20665211-20665100) | |
| 975-1086, gnl|canFam2|chr10 (59632160-59632234) | |
| 975-1086, gnl|dasNov1|scaffold_19557 (448-522) | |
| 975-1086, gnl|echTel1|scaffold_282379 (85012-85090) | |
| 975-1086, gnl|fr1|chrUn (46929098-46929176) | |
| 975-1086, gnl|galGal2|chr3 (2209214-2209136) | |
| 975-1086, gnl|Hg17|chr2 (55782216-55782105) | |
| 975-1086, gnl|hg17|chr3 (3998999-3999077) | |
| 975-1086, gnl|loxAfr1|scaffold_26204 (33264-33342) | |
| 975-1086, gnl|mm7|chr11 (29108946-29108872) | |
| 975-1086, gnl|Mm7|chr11 (29108838-29108949) | |
| 975-1086, gnl|monDom2|scaffold_1 (18629735-18629813) | |
| 975-1086, gnl|oryCun1|scaffold_211702 (35817-35891) | |
| 975-1086, gnl|panTro1|chr2 (4107767-4107845) | |
| 975-1086, gnl|rheMac2|chr2 (57045844-57045766) | |
| 975-1086, gnl|rn3|chr14 (110180810-110180736) | |
| 975-1086, gnl|tetNig1|chr17 (10722122-10722044) | |
| 1267-1648, gnl|bosTau2|chr11 (20660645-20660275) | |
| 1267-1648, gnl|Hg17|chr2 (55775181-55774780) | |
| 1267-1648, gnl|Mm7|chr11 (29113331-29113699) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-527, gnl|bosTau2|chr8 (49960599-49960141) | |
| 45-527, gnl|Hg17|chr7 (121077914-121077446) | |
| 45-527, gnl|Mm7|chr6 (22782705-22782241) | |
| 124-251, gnl|bosTau2|chr11 (20682326-20682200) | |
| 124-251, gnl|canFam2|chr10 (59649442-59649540) | |
| 124-251, gnl|canFam2|chr10 (59649437-59649545) | |
| 124-251, gnl|dasNov1|scaffold_10797 (283-391) | |
| 124-251, gnl|dasNov1|scaffold_17059 (80223-80324) | |
| 124-251, gnl|echTel1|scaffold_282379 (85828-85930) | |
| 124-251, gnl|echTel1|scaffold_324791 (48038-48146) | |
| 124-251, gnl|fr1|chrUn (46931908-46932037) | |
| 124-251, gnl|fr1|chrUn (46931903-46932011) | |
| 124-251, gnl|galGal2|chr3 (2200766-2200664) | |
| 124-251, gnl|galGal2|chr3 (2200771-2200663) | |
| 124-251, gnl|hg17|chr2 (55805775-55805883) | |
| 124-251, gnl|Hg17|chr2 (55805901-55805775) | |
| 124-251, gnl|hg17|chr3 (3999836-3999938) | |
| 124-251, gnl|loxAfr1|scaffold_26204 (50719-50827) | |
| 124-251, gnl|loxAfr1|scaffold_98242 (3629-3728) | |
| 124-251, gnl|mm7|chr11 (29093771-29093669) | |
| 124-251, gnl|mm7|chr11 (29093776-29093668) | |
| 124-251, gnl|Mm7|chr11 (29093653-29093774) | |
| 124-251, gnl|monDom2|scaffold_1 (18652553-18652653) | |
| 124-251, gnl|monDom2|scaffold_1 (18652548-18652656) | |
| 124-251, gnl|oryCun1|scaffold_170954 (3255-3153) | |
| 124-251, gnl|oryCun1|scaffold_210724 (108013-108121) | |
| 124-251, gnl|panTro1|chr12 (57961636-57961744) | |
| 124-251, gnl|panTro1|chr2 (4108605-4108707) | |
| 124-251, gnl|rheMac2|chr13 (55989234-55989342) | |
| 124-251, gnl|rheMac2|chr2 (57045024-57044923) | |
| 124-251, gnl|rn3|chr14 (110167028-110166930) | |
| 124-251, gnl|rn3|chr14 (110167033-110166925) | |
| 124-251, gnl|tetNig1|chr17 (10719823-10719626) | |
| 124-251, gnl|tetNig1|chr17 (10719828-10719720) | |
| 124-251, gnl|xenTro1|scaffold_392 (345997-346099) | |
| 124-251, gnl|xenTro1|scaffold_392 (345992-346100) | |
| 560-715, gnl|bosTau2|chr8 (49959902-49959749) | |
| 560-715, gnl|Hg17|chr7 (121077211-121077059) | |
| 566-676, gnl|bosTau2|chr11 (20667691-20667581) | |
| 566-676, gnl|canFam2|chr10 (59635965-59636071) | |
| 566-676, gnl|canFam2|chr10 (59635952-59636078) | |
| 566-676, gnl|dasNov1|scaffold_17059 (79530-79636) | |
| 566-676, gnl|dasNov1|scaffold_19557 (3281-3407) | |
| 566-676, gnl|echTel1|scaffold_282379 (85423-85529) | |
| 566-676, gnl|echTel1|scaffold_288194 (2710-2836) | |
| 566-676, gnl|fr1|chrUn (46930707-46930816) | |
| 566-676, gnl|fr1|chrUn (46930693-46930823) | |
| 566-676, gnl|galGal2|chr3 (2205194-2205088) | |
| 566-676, gnl|galGal2|chr3 (2205201-2205080) | |
| 566-676, gnl|hg17|chr2 (55786120-55786246) | |
| 566-676, gnl|Hg17|chr2 (55786242-55786132) | |
| 566-676, gnl|hg17|chr3 (3999407-3999513) | |
| 566-676, gnl|loxAfr1|scaffold_26204 (36665-36771) | |
| 566-676, gnl|loxAfr1|scaffold_26204 (36652-36778) | |
| 566-676, gnl|mm7|chr11 (29105344-29105240) | |
| 566-676, gnl|mm7|chr11 (29105359-29105233) | |
| 566-676, gnl|Mm7|chr11 (29105235-29105345) | |
| 566-676, gnl|monDom2|scaffold_1 (18637754-18637883) | |
| 566-676, gnl|oryCun1|scaffold_170954 (3675-3569) | |
| 566-676, gnl|oryCun1|scaffold_211702 (39379-39505) | |
| 566-676, gnl|panTro1|chr12 (57943910-57944036) | |
| 566-676, gnl|panTro1|chr2 (4108175-4108281) | |
| 566-676, gnl|rheMac2|chr13 (55970514-55970640) | |
| 566-676, gnl|rheMac2|chr2 (57045439-57045333) | |
| 566-676, gnl|rn3|chr14 (110177354-110177250) | |
| 566-676, gnl|rn3|chr14 (110177369-110177243) | |
| 566-676, gnl|tetNig1|chr17 (10721150-10721040) | |
| 566-676, gnl|tetNig1|chr17 (10721156-10721033) | |
| 566-676, gnl|xenTro1|scaffold_392 (337467-337576) | |
| 566-676, gnl|xenTro1|scaffold_392 (337456-337583) | |
| 975-1086, gnl|bosTau2|chr11 (20665211-20665100) | |
| 975-1086, gnl|canFam2|chr10 (59632160-59632234) | |
| 975-1086, gnl|dasNov1|scaffold_19557 (448-522) | |
| 975-1086, gnl|echTel1|scaffold_282379 (85012-85090) | |
| 975-1086, gnl|fr1|chrUn (46929098-46929176) | |
| 975-1086, gnl|galGal2|chr3 (2209214-2209136) | |
| 975-1086, gnl|Hg17|chr2 (55782216-55782105) | |
| 975-1086, gnl|hg17|chr3 (3998999-3999077) | |
| 975-1086, gnl|loxAfr1|scaffold_26204 (33264-33342) | |
| 975-1086, gnl|mm7|chr11 (29108946-29108872) | |
| 975-1086, gnl|Mm7|chr11 (29108838-29108949) | |
| 975-1086, gnl|monDom2|scaffold_1 (18629735-18629813) | |
| 975-1086, gnl|oryCun1|scaffold_211702 (35817-35891) | |
| 975-1086, gnl|panTro1|chr2 (4107767-4107845) | |
| 975-1086, gnl|rheMac2|chr2 (57045844-57045766) | |
| 975-1086, gnl|rn3|chr14 (110180810-110180736) | |
| 975-1086, gnl|tetNig1|chr17 (10722122-10722044) | |
| 1267-1648, gnl|bosTau2|chr11 (20660645-20660275) | |
| 1267-1648, gnl|Hg17|chr2 (55775181-55774780) | |
| 1267-1648, gnl|Mm7|chr11 (29113331-29113699) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ski (0.29347) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| tra (0.246184) | |
| nje (0.16592) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.29347) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| tra (0.246184) | |
| nje (0.16592) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| thg (0.126791) |