Non-Coding RNA Search

Ss1.1-Pig4-TMW8026N10.5

Sequence:


               
               TTCAACAGCCTACCAGTACAATCTTTTGTGAAAGATAACTTTGAAGTCACTTTCTGCTTT
GTTAGTAAAGTTGTCTCCCTCTCCAGAGCTCCAGTCAAGTTTTAAAGTATAATTTATAAA
GACTAACATACAAAGAATAGTGCTGAATTAAGTGGCATTTAATTACCTACATGCCATTTT
GGTCCAAGAAATTACTTCAATGTCAGAGTCGTATGCAGCACATCAAGCTTTTCCATAGAC
AGGGGTGTAATATGAAAGCTGCTTTTTTTTTTTTTTTTTTTTTAAAGAATAAAAGCACAT
TCCATGTACGTAAATGAATTTAAAATAATAAACTGAGGCAAACAGTTAAGTTTTATTTTT
AGAACAGCAAGTTAACTGTAAATATTTTAATGTTAGTTTGCTCATCTATGATCTGAGATC
ATACTGAAGTGAGAAAAAAATCCCCCAAAGTACAATTTAATGCATTGGGAAAAAAAAAAA
TCTAAAAATAGTAATTCCAGCTACAATCTTCAGATCACCTTTGTAATGTGTTATGGGTCC
ATTTTTCCTGGAATAGCTTAAACTGAAGCAGTTTCCCCTGTTTTGGAGGTTTTGTAGTTA
ATTTTAATTTTGGCTATTGTTTGGAAAAGATGGGCTGTCTGTGTAGATATGAAGTATAGT
TTTTCCATAAAACAGATGTTTATTTTGTATTAAAAATACCACTGTACTTGTTTTACACCA
TTTGTATACATGTGGTGATATTAATGCTCAACTGTAAAATTCAGGAATTAAAATGTGACC
CTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAACAGCCTACCAGTACAATCTTTTGTGAAAGATAACTTTGAAGTCACTTTCTGCTTT
GTTAGTAAAGTTGTCTCCCTCTCCAGAGCTCCAGTCAAGTTTTAAAGTATAATTTATAAA
GACTAACATACAAAGAATAGTGCTGAATTAAGTGGCATTTAATTACCTACATGCCATTTT
GGTCCAAGAAATTACTTCAATGTCAGAGTCGTATGCAGCACATCAAGCTTTTCCATAGAC
AGGGGTGTAATATGAAAGCTGCTTTTTTTTTTTTTTTTTTTTTAAAGAATAAAAGCACAT
TCCATGTACGTAAATGAATTTAAAATAATAAACTGAGGCAAACAGTTAAGTTTTATTTTT
AGAACAGCAAGTTAACTGTAAATATTTTAATGTTAGTTTGCTCATCTATGATCTGAGATC
ATACTGAAGTGAGAAAAAAATCCCCCAAAGTACAATTTAATGCATTGGGAAAAAAAAAAA
TCTAAAAATAGTAATTCCAGCTACAATCTTCAGATCACCTTTGTAATGTGTTATGGGTCC
ATTTTTCCTGGAATAGCTTAAACTGAAGCAGTTTCCCCTGTTTTGGAGGTTTTGTAGTTA
ATTTTAATTTTGGCTATTGTTTGGAAAAGATGGGCTGTCTGTGTAGATATGAAGTATAGT
TTTTCCATAAAACAGATGTTTATTTTGTATTAAAAATACCACTGTACTTGTTTTACACCA
TTTGTATACATGTGGTGATATTAATGCTCAACTGTAAAATTCAGGAATTAAAATGTGACC
CTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-786, gnl|bosTau2|chr11 (20598001-20597227)
               

               
               1-786, gnl|Hg17|chr2 (55687927-55687170)
               

               
               1-786, gnl|Mm7|chr11 (29171290-29172004)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-786, gnl|bosTau2|chr11 (20598001-20597227)
               

               
               1-786, gnl|Hg17|chr2 (55687927-55687170)
               

               
               1-786, gnl|Mm7|chr11 (29171290-29172004)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               vin (0.665115)
               

               
               jej (0.395687)
               

               
               mgm (0.360685)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               jej (0.395687)
               

               
               mgm (0.360685)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	1-786, gnl\|bosTau2\|chr11 (20598001-20597227)
	1-786, gnl\|Hg17\|chr2 (55687927-55687170)
	1-786, gnl\|Mm7\|chr11 (29171290-29172004)

	vin (0.665115)
	jej (0.395687)
	mgm (0.360685)
	bla (0.248694)
	jca (0.22792)
	tes (0.207814)
	col (0.195008)
	fty (0.17584)
	duo (0.172801)
	fco (0.157208)
	cag (0.151194)
	bfe (0.149858)
	pty (0.142714)
	lnt (0.142308)
	ova (0.129132)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	eje (0.0988338)