Non-Coding RNA Search

Ss1.1-Pig4-TMW8026N15.3

Sequence:


               
               GGTACAGGCTTCTCCAGTCAGAATGAGATTGAAGGTGCAGGATCGAAGCCAGCAAGTTCC
TCAGGCAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCTTTTCCAGTGACT
GGAATAAAAACAGAGTCTGATGAAAGGAATGGGTCTGGGACTTTAACAGGGAGCCATGAT
TATCCAGTCAAGAAGATGAAAACTACGGAGAAGGGATTTGGTTTGGTGGCTTATGCTGCA
GATTCTTCTGACGAAGAGGAGGAACATGGCGGTCATAAAAATGCAAGTAGTTTTCCACAG
GGCTGGAGTTTGGGATATCAGTACCCTTCATCACAACCACGAGCTAAACAACAGATGCCA
TTCTGGATGGCCCCATAGGCAACAGTGGAAGAGTTTTGAGCCTTGGTGACTCTTTAGCAA
TAATGCATGCATTCGATTTAACAAGACTCTGGGGCCTGTCCTAGGAACCATCTTGGACCT
TTGAAGAAGTCAGAGATGAGTGTCTCCTTTCTTAAAGGGGTTCCATTCTTTTTAAAACAT
CCTTAAATCTGCAGCGGCATAGCATCTGTTAAAATTTACTTAGAATCACAGATTTGTCTC
AGAAGCTTTTTAACAGTTGGTGAAATGTGCTCGTTCAACAGGGTCATTCCGATATACACT
TGACCTGGTCCAGCCTTTTCCAAATGAATAGCCCTTATTCTGACGTAAACCAAGTTTTAT
TTGTATTTTACTACTGTTTGGTCAATTTTGATAATAACTGGTTCCAAACAAAGCCTTACT
ATTTATTAGTGGGGAAATGATTTTAAGACCATCCTTTCTTTTCAGTACTTAGATCTAAGA
ACCCCTGCGTCCCTGTTTCATTTTTGGATTCTTTGTTTTGGAAAACGTGGTTTTACTAAT
TTAAAACTGTTGAATATAGCTGGATCCTGGGGAATTGAAGGTTTTCTTTATTTCTTTGGG
ATGATCCAAAGCTGGCACCTTCAGGCACTCTCGTCTCAGAGAGCCATTGCTGTTTTTATT
GCCCGTCTAAGCTCCTTGTCTTCAAGTGGGTCAGAGAAAACTGCTTGATCAAAAGCTGGT
CAGAACTCATCACAGAAATGAAACCCAGTGGTCTGTCTCTCTCAGAACTGGTTGCAGCGA
AAATAGAGAGATTTGACTGCTCGCAATAGAATGGTGGACTTAGTGACTGAGATTGCGACT
TGTCCTTTTTCTTGGCATTACAGGTTTTGCCAAAAGAACTTTTTTTGTATCAAATATTGA
TGTGTGAAAGTGAAGGAGCTAGTCTGCTGAACCAGGAGTAGTTTGAGATATTGAACTATC
ATTTTTGCACATTTGAATACTTTGCAGGCTGGCTTTGTATAAATGTATCCTCTGGTTTCC
TATATGTTGTAAATATTTAGAACATAATTTCATTATAAATAAATGTATAAATATTCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACAGGCTTCTCCAGTCAGAATGAGATTGAAGGTGCAGGATCGAAGCCAGCAAGTTCC
TCAGGCAAAGAGCGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCTTTTCCAGTGACT
GGAATAAAAACAGAGTCTGATGAAAGGAATGGGTCTGGGACTTTAACAGGGAGCCATGAT
TATCCAGTCAAGAAGATGAAAACTACGGAGAAGGGATTTGGTTTGGTGGCTTATGCTGCA
GATTCTTCTGACGAAGAGGAGGAACATGGCGGTCATAAAAATGCAAGTAGTTTTCCACAG
GGCTGGAGTTTGGGATATCAGTACCCTTCATCACAACCACGAGCTAAACAACAGATGCCA
TTCTGGATGGCCCCATAGGCAACAGTGGAAGAGTTTTGAGCCTTGGTGACTCTTTAGCAA
TAATGCATGCATTCGATTTAACAAGACTCTGGGGCCTGTCCTAGGAACCATCTTGGACCT
TTGAAGAAGTCAGAGATGAGTGTCTCCTTTCTTAAAGGGGTTCCATTCTTTTTAAAACAT
CCTTAAATCTGCAGCGGCATAGCATCTGTTAAAATTTACTTAGAATCACAGATTTGTCTC
AGAAGCTTTTTAACAGTTGGTGAAATGTGCTCGTTCAACAGGGTCATTCCGATATACACT
TGACCTGGTCCAGCCTTTTCCAAATGAATAGCCCTTATTCTGACGTAAACCAAGTTTTAT
TTGTATTTTACTACTGTTTGGTCAATTTTGATAATAACTGGTTCCAAACAAAGCCTTACT
ATTTATTAGTGGGGAAATGATTTTAAGACCATCCTTTCTTTTCAGTACTTAGATCTAAGA
ACCCCTGCGTCCCTGTTTCATTTTTGGATTCTTTGTTTTGGAAAACGTGGTTTTACTAAT
TTAAAACTGTTGAATATAGCTGGATCCTGGGGAATTGAAGGTTTTCTTTATTTCTTTGGG
ATGATCCAAAGCTGGCACCTTCAGGCACTCTCGTCTCAGAGAGCCATTGCTGTTTTTATT
GCCCGTCTAAGCTCCTTGTCTTCAAGTGGGTCAGAGAAAACTGCTTGATCAAAAGCTGGT
CAGAACTCATCACAGAAATGAAACCCAGTGGTCTGTCTCTCTCAGAACTGGTTGCAGCGA
AAATAGAGAGATTTGACTGCTCGCAATAGAATGGTGGACTTAGTGACTGAGATTGCGACT
TGTCCTTTTTCTTGGCATTACAGGTTTTGCCAAAAGAACTTTTTTTGTATCAAATATTGA
TGTGTGAAAGTGAAGGAGCTAGTCTGCTGAACCAGGAGTAGTTTGAGATATTGAACTATC
ATTTTTGCACATTTGAATACTTTGCAGGCTGGCTTTGTATAAATGTATCCTCTGGTTTCC
TATATGTTGTAAATATTTAGAACATAATTTCATTATAAATAAATGTATAAATATTCAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               178-498, gnl|bosTau2|chr3 (10697040-10697362)
               

               
               178-498, gnl|Hg17|chr1 (152697185-152696863)
               

               
               178-498, gnl|Mm7|chr3 (88825430-88825753)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-498, gnl|bosTau2|chr3 (10697040-10697362)
               

               
               178-498, gnl|Hg17|chr1 (152697185-152696863)
               

               
               178-498, gnl|Mm7|chr3 (88825430-88825753)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               thg (1.01433)
               

               
               spl (1.00229)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               pgl (0.35545)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.01433)
               

               
               spl (1.00229)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               pgl (0.35545)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	178-498, gnl\|bosTau2\|chr3 (10697040-10697362)
	178-498, gnl\|Hg17\|chr1 (152697185-152696863)
	178-498, gnl\|Mm7\|chr3 (88825430-88825753)

	thg (1.01433)
	spl (1.00229)
	liv (0.438853)
	kid (0.389206)
	pgl (0.35545)
	lin (0.291206)
	tra (0.246184)
	sag (0.182715)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	eli (0.151814)
	ski (0.146735)
	csk (0.140746)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)