Ss1.1-Pig4-TMW8026N22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCCGGGCGGCTGAGCTGCGCTTCGCCATGGAGCAGCTGAGCGCGGCCAACACCCGCTT CGCCTTGGACCTGTTCCGCGCCCTGAATGAGAGCAATCCTGCTGGGAACATCTTCATCTC CCCCTTCAGCATTTCGTCAGCACTGGCCATGATCCTTCTGGGGACCAGAGGCAACACGGA GGCCCAGATGTCCAAGGCTCTCCATTTCGACACTGTCAAGGACATTCATTCACGATTTCA GAGTCTGAATGCGGATATCAACAAGTGTGGAGCCTCCTATATCCTGAAACTCGCTAATAG GTTGTTTGGCGAAAAAACCTATCACTTCCTCCCCGAATTCTTAGCTTCAACTCAGAAAAC CTACGGGGCTGAACTGGCCAGCGTGGACTTCCTGCGGGCCTCGGAAGAGGCCCGGAAGGC GATAAACGAGTGGGTCAAAGAGCAGACGGAAGGGAAAATTCCAGAGCTGCTGGCATCAGG TGTGGTTGATAGCGCCACTAAACTGGTGCTGGTGAATGCCATCTATTTCAAAGGCAGCTG GCAGGAGAAGTTCATGACAGAGGCCACGAAGGATGCCCCGTTCAGGCTGAATAAGAAAGA CAGCAAAACGGTGAAAATGATGTATCAGAAGAAGAAATTCCCATTCGGCTACATCAAGGA GCTCAAGTGCCGGGTGCTGGAATTGCCCTATCAGGGCAAGGACCTCAGCATGGTCATCCT GCTGCCGGACAGCATCGAGGACGAGTCCACGGGTCTGAGGAAGATTGAGCAACACCTGAC CCTGGAAAAGCTGCGTGAGTGGACCAAACCTGACAATCTGGAGCTCCTGGAGGTCAATGT CCACCTGCCCAGGTTCAGGCTGGAGGAGAGCTACGACCTCAACGCCCCGCTGGCCCGCCT GGGCGTGCAGGATCTCTTTGGCAGCAGGGCTGACCTGACTGGCATGTCGGAAGCCCGCGA CCTCTTCATATCCAAGGTGGTCCACAAGTCTTTCGTGGAAGTGAACGAGGAGGGCACGGA GGCGGCCGCTGCCACCGCGGGCATCGCTGTCTTCGCCATGCTGATGCCAGAGGAGGATTT CATCGCTGACCACCCGTTCATTTTCTTCATCCGGCATAATCCCTCCTCCAACATCCTCTT CCTCGGCCGCCTCTCTTCCCCGTAGAGGCGAGATGCAAGGTCACGCTTAGGGCTCCCCCG ACCTTTTCATGGCGACCCTTCTCATCTGTCTTTACCAATACCCCTCCTCCTCTCCAAAAA CAAATCTTTTAACCTCCTTTGTAAGCTCAGATCTGTTGGCTGTTTACACCCGTTAACTTG GCATGGGCACCTGTTCTTCTTTTTTCCGTACTGAAAAAACAAATCCAGCATCAGGTTAGA GAAAGGAAGAAATCATCAGATGTGTAGATTCTTGACCATGTAGCGACCTGAGCAGTTGCT CTGCTTTTCCTGAGAGGCAAGTGGAACATGCTCACACGGTCACCTGTCTTACAGACAGAC TTCTGGAGGCCCTCAGCGAGACACCCAGATTGTTGGAGGGAGGCTTAAAAGCGGATATTC TATTGACATACAGGAGCAGCCCAATGAAGGGCCCGGGCTGTGCGGACAGACTTGCCTTGG CAACGTCCCCGACCGCGTGCGCTGCAGGCCCGGCGTCCCATTTCAGCCCTTTGGGTGTCA CACTCTCGAAGGGCCGCCTGGCGATAACCTGACCTCCCTTTTCTGCTCTCCTTGGTCCTT CCTGCTTGGGTTTGGGTGGGGTCACAGGGAATCAAGCAGCAGGTGTCTGTCATATCATGA AAGGTGCCAAGGAGTGACAAAAAGCAGAGCATCACAGGAGAGACTGTTAAGCAAAGAGGT GGAGCAGAGAGCCCGTCGCGAATGGCTTCTCCCGAGATTTCCGATCAAGGCTCTTCACAG CTGGCATCTGGTACAGATTTTATGGCAATGACATGGCTTGATGCAATGCTGCAGTGGGAG ATCGCTGGGGGGGGGTGCTTTGATTCATAGAAACCTCTGTCAATATGCTCCTTGGAACGG GGCCTGACGTGCTGCATTTTCTTGCTCCCACAAAGCTCGTGGGCCAGTTAATAAAGCTTC CTAAGGTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCCGGGCGGCTGAGCTGCGCTTCGCCATGGAGCAGCTGAGCGCGGCCAACACCCGCTT CGCCTTGGACCTGTTCCGCGCCCTGAATGAGAGCAATCCTGCTGGGAACATCTTCATCTC CCCCTTCAGCATTTCGTCAGCACTGGCCATGATCCTTCTGGGGACCAGAGGCAACACGGA GGCCCAGATGTCCAAGGCTCTCCATTTCGACACTGTCAAGGACATTCATTCACGATTTCA GAGTCTGAATGCGGATATCAACAAGTGTGGAGCCTCCTATATCCTGAAACTCGCTAATAG GTTGTTTGGCGAAAAAACCTATCACTTCCTCCCCGAATTCTTAGCTTCAACTCAGAAAAC CTACGGGGCTGAACTGGCCAGCGTGGACTTCCTGCGGGCCTCGGAAGAGGCCCGGAAGGC GATAAACGAGTGGGTCAAAGAGCAGACGGAAGGGAAAATTCCAGAGCTGCTGGCATCAGG TGTGGTTGATAGCGCCACTAAACTGGTGCTGGTGAATGCCATCTATTTCAAAGGCAGCTG GCAGGAGAAGTTCATGACAGAGGCCACGAAGGATGCCCCGTTCAGGCTGAATAAGAAAGA CAGCAAAACGGTGAAAATGATGTATCAGAAGAAGAAATTCCCATTCGGCTACATCAAGGA GCTCAAGTGCCGGGTGCTGGAATTGCCCTATCAGGGCAAGGACCTCAGCATGGTCATCCT GCTGCCGGACAGCATCGAGGACGAGTCCACGGGTCTGAGGAAGATTGAGCAACACCTGAC CCTGGAAAAGCTGCGTGAGTGGACCAAACCTGACAATCTGGAGCTCCTGGAGGTCAATGT CCACCTGCCCAGGTTCAGGCTGGAGGAGAGCTACGACCTCAACGCCCCGCTGGCCCGCCT GGGCGTGCAGGATCTCTTTGGCAGCAGGGCTGACCTGACTGGCATGTCGGAAGCCCGCGA CCTCTTCATATCCAAGGTGGTCCACAAGTCTTTCGTGGAAGTGAACGAGGAGGGCACGGA GGCGGCCGCTGCCACCGCGGGCATCGCTGTCTTCGCCATGCTGATGCCAGAGGAGGATTT CATCGCTGACCACCCGTTCATTTTCTTCATCCGGCATAATCCCTCCTCCAACATCCTCTT CCTCGGCCGCCTCTCTTCCCCGTAGAGGCGAGATGCAAGGTCACGCTTAGGGCTCCCCCG ACCTTTTCATGGCGACCCTTCTCATCTGTCTTTACCAATACCCCTCCTCCTCTCCAAAAA CAAATCTTTTAACCTCCTTTGTAAGCTCAGATCTGTTGGCTGTTTACACCCGTTAACTTG GCATGGGCACCTGTTCTTCTTTTTTCCGTACTGAAAAAACAAATCCAGCATCAGGTTAGA GAAAGGAAGAAATCATCAGATGTGTAGATTCTTGACCATGTAGCGACCTGAGCAGTTGCT CTGCTTTTCCTGAGAGGCAAGTGGAACATGCTCACACGGTCACCTGTCTTACAGACAGAC TTCTGGAGGCCCTCAGCGAGACACCCAGATTGTTGGAGGGAGGCTTAAAAGCGGATATTC TATTGACATACAGGAGCAGCCCAATGAAGGGCCCGGGCTGTGCGGACAGACTTGCCTTGG CAACGTCCCCGACCGCGTGCGCTGCAGGCCCGGCGTCCCATTTCAGCCCTTTGGGTGTCA CACTCTCGAAGGGCCGCCTGGCGATAACCTGACCTCCCTTTTCTGCTCTCCTTGGTCCTT CCTGCTTGGGTTTGGGTGGGGTCACAGGGAATCAAGCAGCAGGTGTCTGTCATATCATGA AAGGTGCCAAGGAGTGACAAAAAGCAGAGCATCACAGGAGAGACTGTTAAGCAAAGAGGT GGAGCAGAGAGCCCGTCGCGAATGGCTTCTCCCGAGATTTCCGATCAAGGCTCTTCACAG CTGGCATCTGGTACAGATTTTATGGCAATGACATGGCTTGATGCAATGCTGCAGTGGGAG ATCGCTGGGGGGGGGTGCTTTGATTCATAGAAACCTCTGTCAATATGCTCCTTGGAACGG GGCCTGACGTGCTGCATTTTCTTGCTCCCACAAAGCTCGTGGGCCAGTTAATAAAGCTTC CTAAGGTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 451-570, - strand, RNAz p=0.819831 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 451-570, - strand, RNAz p=0.819831 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 12-197, gnl|bosTau2|chr23 (31730840-31730654) | |
| 12-197, gnl|canFam2|chr35 (6153596-6153755) | |
| 12-197, gnl|danRer3|chr16 (52460810-52460969) | |
| 12-197, gnl|dasNov1|scaffold_15049 (20253-20411) | |
| 12-197, gnl|echTel1|scaffold_277969 (7283-7128) | |
| 12-197, gnl|fr1|chrUn (46732751-46732901) | |
| 12-197, gnl|galGal2|chr2 (67433161-67433318) | |
| 12-197, gnl|hg17|chr6 (2785642-2785801) | |
| 12-197, gnl|Hg17|chr6 (2785838-2785651) | |
| 12-197, gnl|loxAfr1|scaffold_51484 (12520-12678) | |
| 12-197, gnl|mm7|chr13 (32262468-32262627) | |
| 12-197, gnl|Mm7|chr13 (32215972-32215785) | |
| 12-197, gnl|monDom2|scaffold_4 (68409177-68409019) | |
| 12-197, gnl|oryCun1|scaffold_187490 (61788-61629) | |
| 12-197, gnl|panTro1|chr5 (2799764-2799923) | |
| 12-197, gnl|rheMac2|chr4 (2707485-2707644) | |
| 12-197, gnl|rn3|chr17 (37954935-37954776) | |
| 12-197, gnl|tetNig1|chrUn_random (45306683-45306839) | |
| 12-197, gnl|xenTro1|scaffold_78 (732472-732622) | |
| 451-595, gnl|bosTau2|chr23 (31725993-31725849) | |
| 451-595, gnl|canFam2|chr35 (6149692-6149847) | |
| 451-595, gnl|danRer3|chr20 (40273448-40273606) | |
| 451-595, gnl|dasNov1|scaffold_15049 (15739-15894) | |
| 451-595, gnl|echTel1|scaffold_277969 (10188-10035) | |
| 451-595, gnl|fr1|chrUn (46731680-46731840) | |
| 451-595, gnl|galGal2|chr2 (67395669-67395822) | |
| 451-595, gnl|hg17|chr6 (2781338-2781495) | |
| 451-595, gnl|Hg17|chr6 (2781485-2781341) | |
| 451-595, gnl|loxAfr1|scaffold_26259 (44407-44556) | |
| 451-595, gnl|mm7|chr13 (32249765-32249920) | |
| 451-595, gnl|Mm7|chr13 (32211362-32211218) | |
| 451-595, gnl|monDom2|scaffold_4 (68414592-68414439) | |
| 451-595, gnl|oryCun1|scaffold_187490 (66706-66553) | |
| 451-595, gnl|panTro1|chr5 (2795459-2795616) | |
| 451-595, gnl|rheMac2|chr4 (2702933-2703089) | |
| 451-595, gnl|rn3|chr17 (37959381-37959226) | |
| 451-595, gnl|tetNig1|chrUn_random (45305652-45305804) | |
| 451-595, gnl|xenTro1|scaffold_78 (722151-722308) | |
| 762-1163, gnl|bosTau2|chr18 (35975460-35975059) | |
| 762-1163, gnl|Hg17|chr6 (2893934-2893533) | |
| 762-1163, gnl|Mm7|chr13 (33335979-33335578) | |
| 1849-2115, gnl|bosTau2|chr23 (31723399-31723135) | |
| 1849-2115, gnl|Mm7|chr13 (32460119-32460370) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-197, gnl|bosTau2|chr23 (31730840-31730654) | |
| 12-197, gnl|canFam2|chr35 (6153596-6153755) | |
| 12-197, gnl|danRer3|chr16 (52460810-52460969) | |
| 12-197, gnl|dasNov1|scaffold_15049 (20253-20411) | |
| 12-197, gnl|echTel1|scaffold_277969 (7283-7128) | |
| 12-197, gnl|fr1|chrUn (46732751-46732901) | |
| 12-197, gnl|galGal2|chr2 (67433161-67433318) | |
| 12-197, gnl|hg17|chr6 (2785642-2785801) | |
| 12-197, gnl|Hg17|chr6 (2785838-2785651) | |
| 12-197, gnl|loxAfr1|scaffold_51484 (12520-12678) | |
| 12-197, gnl|mm7|chr13 (32262468-32262627) | |
| 12-197, gnl|Mm7|chr13 (32215972-32215785) | |
| 12-197, gnl|monDom2|scaffold_4 (68409177-68409019) | |
| 12-197, gnl|oryCun1|scaffold_187490 (61788-61629) | |
| 12-197, gnl|panTro1|chr5 (2799764-2799923) | |
| 12-197, gnl|rheMac2|chr4 (2707485-2707644) | |
| 12-197, gnl|rn3|chr17 (37954935-37954776) | |
| 12-197, gnl|tetNig1|chrUn_random (45306683-45306839) | |
| 12-197, gnl|xenTro1|scaffold_78 (732472-732622) | |
| 451-595, gnl|bosTau2|chr23 (31725993-31725849) | |
| 451-595, gnl|canFam2|chr35 (6149692-6149847) | |
| 451-595, gnl|danRer3|chr20 (40273448-40273606) | |
| 451-595, gnl|dasNov1|scaffold_15049 (15739-15894) | |
| 451-595, gnl|echTel1|scaffold_277969 (10188-10035) | |
| 451-595, gnl|fr1|chrUn (46731680-46731840) | |
| 451-595, gnl|galGal2|chr2 (67395669-67395822) | |
| 451-595, gnl|hg17|chr6 (2781338-2781495) | |
| 451-595, gnl|Hg17|chr6 (2781485-2781341) | |
| 451-595, gnl|loxAfr1|scaffold_26259 (44407-44556) | |
| 451-595, gnl|mm7|chr13 (32249765-32249920) | |
| 451-595, gnl|Mm7|chr13 (32211362-32211218) | |
| 451-595, gnl|monDom2|scaffold_4 (68414592-68414439) | |
| 451-595, gnl|oryCun1|scaffold_187490 (66706-66553) | |
| 451-595, gnl|panTro1|chr5 (2795459-2795616) | |
| 451-595, gnl|rheMac2|chr4 (2702933-2703089) | |
| 451-595, gnl|rn3|chr17 (37959381-37959226) | |
| 451-595, gnl|tetNig1|chrUn_random (45305652-45305804) | |
| 451-595, gnl|xenTro1|scaffold_78 (722151-722308) | |
| 762-1163, gnl|bosTau2|chr18 (35975460-35975059) | |
| 762-1163, gnl|Hg17|chr6 (2893934-2893533) | |
| 762-1163, gnl|Mm7|chr13 (33335979-33335578) | |
| 1849-2115, gnl|bosTau2|chr23 (31723399-31723135) | |
| 1849-2115, gnl|Mm7|chr13 (32460119-32460370) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nbm (0.695272) | |
| pro (0.512033) | |
| elu (0.385356) | |
| ill (0.351185) | |
| ton (0.351) | |
| duo (0.345602) | |
| nca (0.273748) | |
| cly (0.241284) | |
| jej (0.197844) | |
| eje (0.197668) | |
| eye (0.170503) | |
| csp (0.161186) | |
| eli (0.151814) | |
| csk (0.140746) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.695272) | |
| pro (0.512033) | |
| elu (0.385356) | |
| ill (0.351185) | |
| ton (0.351) | |
| duo (0.345602) | |
| nca (0.273748) | |
| cly (0.241284) | |
| jej (0.197844) | |
| eje (0.197668) | |
| eye (0.170503) | |
| csp (0.161186) | |
| eli (0.151814) | |
| csk (0.140746) | |
| cty (0.10408) |