Non-Coding RNA Search

Ss1.1-Pig4-TMW8026N24.3

Sequence:


               
               GTCTTTAAAGTCCAGACCCCCCAAATTGGGTTTTCTTCCTTTCTCCTGTTTAGTTTGGGG
TCTGTCAATTCTGAGGGGAAACATGCATGAGATTTTTCGAGGTGCCACGCTTAGTGCCAC
TTGACTATGCCAGAGACGCCGGCTGGATTGTGTGGAATTAGGTCTCCTACCTTCCTCTGA
CACCCCAAATTCCCTTCTCCCGGGGACAGTCCACAGACTGAGGCAGAGGCAGCAGCCACT
GGGAGAGCATGGAGAGTGTGTGCAGGTACTATTCTTGGAGATAGTGCTGTATATATGCGG
TTTGCCATACTGTTTCTTTTCATATCCAAACTTAACATGAACTGATGGTGACTCAGGTGG
GTGTGGCCCTTGCCCCTTAGGCAGACTCCATGGCAAGTGCCTTAAATCAGGGCAGGTGTC
ACTCCCAGAGCCTCTGAGGGTGCAGGCTGCTGGCCCAAGAGTGCAGGGTTGTAAATTAGG
CTGCCTGTGGAGAACTGGTCTGGGGAGGAAGCTCTTCCGGCAAAGGGCAGTTTTACCTGT
AGTTCAGACAGCCATGGTGGGCAACTAAACAGGCCTCATGTGTACCAGAATTTACCCAGA
ACTCATTTCTTCAGTATGAAGAACGACCAAACTTTATGTACAGAGAACTTTTTACAAAAG
GCGCACCTTTTTTAGCTGTGGGGTCCACCCTCGTCTAACCCTTCTGGCTGCCTGACTATA
AGTAGGGGCCATTTTGCTGGTGAAAAGCCTCTGCCATGATCCTACGTTTGATTGGACACT
GACAAAATCAAAGTTTCGCAATATTTAGAGCTGCTGTAGCTATTAACAACACAAAATAGG
ATGAATCAGTAGTATGCTAGCTGTCTTTCAGGTTGGTGGCAGTCAGAACATGTGTAATAT
TCTCTACCTGGTCTGTAGCTGTAACTGTGATGTACAGGCAAAGCAAATATTAAAAAAAAA
AAAAACTTACGGAAACAAATAATGCAATGATATTAGGATATACACTTTTGTATTTTTATT
CTTATATAAGGTTATTTGCTGGCTATTGTTGGCCTCTAGTTCAGTCTGTGTTATTTAAAA
TCTAATATATGAATTATTTGGGTTGAATTCATGTTCGGGCCACGTTGTTGTATGTATTGA
TGTACAGCCTTGAATGTGAATAATTATTGTAAACTATATTTTACAACTTTTTTTCTGGCT
TTATTATATAAATTTTCTATTTGGTCGATGATTTAATCATATCATAATTTAATGAATCTG
TTTATTCTTTTTTTTCAAATATTTGTGCTTTAGGTGTAGTTACCGGATGATGAATTTTCC
ACGTATGCTCGGTAGCCTTGTAATAAAAAAGCATGTAGAATGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTAAAGTCCAGACCCCCCAAATTGGGTTTTCTTCCTTTCTCCTGTTTAGTTTGGGG
TCTGTCAATTCTGAGGGGAAACATGCATGAGATTTTTCGAGGTGCCACGCTTAGTGCCAC
TTGACTATGCCAGAGACGCCGGCTGGATTGTGTGGAATTAGGTCTCCTACCTTCCTCTGA
CACCCCAAATTCCCTTCTCCCGGGGACAGTCCACAGACTGAGGCAGAGGCAGCAGCCACT
GGGAGAGCATGGAGAGTGTGTGCAGGTACTATTCTTGGAGATAGTGCTGTATATATGCGG
TTTGCCATACTGTTTCTTTTCATATCCAAACTTAACATGAACTGATGGTGACTCAGGTGG
GTGTGGCCCTTGCCCCTTAGGCAGACTCCATGGCAAGTGCCTTAAATCAGGGCAGGTGTC
ACTCCCAGAGCCTCTGAGGGTGCAGGCTGCTGGCCCAAGAGTGCAGGGTTGTAAATTAGG
CTGCCTGTGGAGAACTGGTCTGGGGAGGAAGCTCTTCCGGCAAAGGGCAGTTTTACCTGT
AGTTCAGACAGCCATGGTGGGCAACTAAACAGGCCTCATGTGTACCAGAATTTACCCAGA
ACTCATTTCTTCAGTATGAAGAACGACCAAACTTTATGTACAGAGAACTTTTTACAAAAG
GCGCACCTTTTTTAGCTGTGGGGTCCACCCTCGTCTAACCCTTCTGGCTGCCTGACTATA
AGTAGGGGCCATTTTGCTGGTGAAAAGCCTCTGCCATGATCCTACGTTTGATTGGACACT
GACAAAATCAAAGTTTCGCAATATTTAGAGCTGCTGTAGCTATTAACAACACAAAATAGG
ATGAATCAGTAGTATGCTAGCTGTCTTTCAGGTTGGTGGCAGTCAGAACATGTGTAATAT
TCTCTACCTGGTCTGTAGCTGTAACTGTGATGTACAGGCAAAGCAAATATTAAAAAAAAA
AAAAACTTACGGAAACAAATAATGCAATGATATTAGGATATACACTTTTGTATTTTTATT
CTTATATAAGGTTATTTGCTGGCTATTGTTGGCCTCTAGTTCAGTCTGTGTTATTTAAAA
TCTAATATATGAATTATTTGGGTTGAATTCATGTTCGGGCCACGTTGTTGTATGTATTGA
TGTACAGCCTTGAATGTGAATAATTATTGTAAACTATATTTTACAACTTTTTTTCTGGCT
TTATTATATAAATTTTCTATTTGGTCGATGATTTAATCATATCATAATTTAATGAATCTG
TTTATTCTTTTTTTTCAAATATTTGTGCTTTAGGTGTAGTTACCGGATGATGAATTTTCC
ACGTATGCTCGGTAGCCTTGTAATAAAAAAGCATGTAGAATGTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1049-1205, + strand, RNAz p=0.833988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1049-1205, + strand, RNAz p=0.833988

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031268, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031268, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               466-1364, gnl|bosTau2|chr1 (95431652-95432544)
               

               
               466-1364, gnl|Hg17|chr16 (2592309-2593190)
               

               
               466-1364, gnl|Mm7|chr17 (22255478-22254618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               466-1364, gnl|bosTau2|chr1 (95431652-95432544)
               

               
               466-1364, gnl|Hg17|chr16 (2592309-2593190)
               

               
               466-1364, gnl|Mm7|chr17 (22255478-22254618)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               rec (0.346141)
               

               
               cut (0.339847)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	466-1364, gnl\|bosTau2\|chr1 (95431652-95432544)
	466-1364, gnl\|Hg17\|chr16 (2592309-2593190)
	466-1364, gnl\|Mm7\|chr17 (22255478-22254618)

	rec (0.346141)
	cut (0.339847)
	lyg (0.266205)
	ret (0.257467)
	thg (0.253582)
	mgp (0.230681)
	mas (0.210305)
	cmu (0.186393)
	ill (0.175593)
	sin (0.174948)
	duo (0.172801)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	liv (0.146284)
	cst (0.140036)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	ecc (0.115035)