Ss1.1-Pig4-TMW8026O04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAGATGGCGGCGCCCTGGTGGCGAGCCGCGCTGTGCGCAAGTCGGCGGTGGCGGGGCT TCAGCACCTCAGCCGCCCTGAGCCGCCGGGCCGCTCCGCTGGGGCCGATGCCCAACGAGG ACATCGATGTGAGCGACCTAGAGCGACTGAAGAAGTACCGCAGCTTCGACCGCTACCGGC GCCGGGCGGAGCAGGAGGCGCGGAAGCCGCATTGGTGGCGGACCTACCGGGAGCATTTCG GGGAGGAGTCAGGTCCCAAAGACAGGGTGGACATTGGGCTGCCTCCACCCAAGGTCTCTC GGACCCAACAGCTGTTAGAGCGGAAACAGGCCCTCCGGGAGCTGCGGGCCAACGTGGAGG AGGAGCGAGCTGCTCGCCTCCAAACAGCCCGCATCCCACTGGAGGCCGTGCGGGCCGAGT GGGAGAGGACCTGTGGCCCCTACCACAAGCAGCGTCTGGCCGAGTACTGCGGCCTCTATC GAGACCTGTTCCACGGTGCCACCTTCGTGCCCCGAGTCCCCCTGCATGTGGCCTACGCCG TAGGTGAGGACGACTTGATGCCTGTGTATCATGGCAACGAGGTCACTCCAACAGAGGCTG CCCAGGCCCCGGAGGTGACCTATGAGGCAGACGAGGGCTCCCTGTGGACCCTGTTGCTCA CCAACTTGGATGGACACCTGCTGGAACCAGATGCCGAGTATGTCCACTGGCTGGTAACCA ACATCCCGGGCAACAGGGTGACTGAAGGACAGGAGACGTGTCCCTACCTCCCTCCCTTCC CTGCCCGAGGCTCCGGTTTCCACCGCTTTGCCTTCCTGCTCTTCAAGCAGGATAAGCGAA TCGACTTCTCTGGGGACACCCGGCCCTCACCCTGCTACCAGCTTGCCCAGCGGACCTTCC ACACTTTCGATTTCTACAAGAAGCACCAAGATGCCATGACTCCGGCTGGCCTGGCCTTCT TCCAATGCCGCTGGGATGACTCTGTCACCCGCGTCTTCCACCAGCTCCTGGACATGCGAG AGCCCGTCTTTGAGTTTGTGCGGCCGCCCCCTTATCACCCTAAGCAGAAGCGCTTCCCCC ACCGGCAGCCCCTGCGCTACCTGGACCGGTACAGAGACAGTCACGAACCCACCTATGGCA TCTACTGACAGGCCAGAGTGCCACCCACCTCAGAGAGTAGACTGGGCCTCTTGGGCCACC CTGTCAGGCTCTGCAGGCAGGAGCAATAGAGAAACGAGATACGGGCGCCACGGGGCCAGG CATTGGGGTTCCCAGCCCTGCCAGAGGCAGGCCCAGAACTTGGAGTGAAGAAGGCTGGGC GGGCTTGGTAGGGAGGTGTCCTGGAGGCTATGAATAAAGATTTTTGCTGTAGCAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAGATGGCGGCGCCCTGGTGGCGAGCCGCGCTGTGCGCAAGTCGGCGGTGGCGGGGCT TCAGCACCTCAGCCGCCCTGAGCCGCCGGGCCGCTCCGCTGGGGCCGATGCCCAACGAGG ACATCGATGTGAGCGACCTAGAGCGACTGAAGAAGTACCGCAGCTTCGACCGCTACCGGC GCCGGGCGGAGCAGGAGGCGCGGAAGCCGCATTGGTGGCGGACCTACCGGGAGCATTTCG GGGAGGAGTCAGGTCCCAAAGACAGGGTGGACATTGGGCTGCCTCCACCCAAGGTCTCTC GGACCCAACAGCTGTTAGAGCGGAAACAGGCCCTCCGGGAGCTGCGGGCCAACGTGGAGG AGGAGCGAGCTGCTCGCCTCCAAACAGCCCGCATCCCACTGGAGGCCGTGCGGGCCGAGT GGGAGAGGACCTGTGGCCCCTACCACAAGCAGCGTCTGGCCGAGTACTGCGGCCTCTATC GAGACCTGTTCCACGGTGCCACCTTCGTGCCCCGAGTCCCCCTGCATGTGGCCTACGCCG TAGGTGAGGACGACTTGATGCCTGTGTATCATGGCAACGAGGTCACTCCAACAGAGGCTG CCCAGGCCCCGGAGGTGACCTATGAGGCAGACGAGGGCTCCCTGTGGACCCTGTTGCTCA CCAACTTGGATGGACACCTGCTGGAACCAGATGCCGAGTATGTCCACTGGCTGGTAACCA ACATCCCGGGCAACAGGGTGACTGAAGGACAGGAGACGTGTCCCTACCTCCCTCCCTTCC CTGCCCGAGGCTCCGGTTTCCACCGCTTTGCCTTCCTGCTCTTCAAGCAGGATAAGCGAA TCGACTTCTCTGGGGACACCCGGCCCTCACCCTGCTACCAGCTTGCCCAGCGGACCTTCC ACACTTTCGATTTCTACAAGAAGCACCAAGATGCCATGACTCCGGCTGGCCTGGCCTTCT TCCAATGCCGCTGGGATGACTCTGTCACCCGCGTCTTCCACCAGCTCCTGGACATGCGAG AGCCCGTCTTTGAGTTTGTGCGGCCGCCCCCTTATCACCCTAAGCAGAAGCGCTTCCCCC ACCGGCAGCCCCTGCGCTACCTGGACCGGTACAGAGACAGTCACGAACCCACCTATGGCA TCTACTGACAGGCCAGAGTGCCACCCACCTCAGAGAGTAGACTGGGCCTCTTGGGCCACC CTGTCAGGCTCTGCAGGCAGGAGCAATAGAGAAACGAGATACGGGCGCCACGGGGCCAGG CATTGGGGTTCCCAGCCCTGCCAGAGGCAGGCCCAGAACTTGGAGTGAAGAAGGCTGGGC GGGCTTGGTAGGGAGGTGTCCTGGAGGCTATGAATAAAGATTTTTGCTGTAGCAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 424-543, - strand, RNAz p=0.573111 | |
| 717-877, - strand, RNAz p=0.982768 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 424-543, - strand, RNAz p=0.573111 | |
| 717-877, - strand, RNAz p=0.982768 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 67-254, gnl|bosTau2|chr19 (49647943-49648130) | |
| 67-254, gnl|canFam2|chr9 (7704863-7704653) | |
| 67-254, gnl|danRer3|chrNA (242621139-242621325) | |
| 67-254, gnl|dasNov1|scaffold_22616 (6673-6883) | |
| 67-254, gnl|echTel1|scaffold_60809 (1019-1221) | |
| 67-254, gnl|fr1|chrUn (253657489-253657686) | |
| 67-254, gnl|galGal2|chr18 (4426719-4426490) | |
| 67-254, gnl|hg17|chr17 (71412195-71412414) | |
| 67-254, gnl|Hg17|chr17 (71412401-71412214) | |
| 67-254, gnl|loxAfr1|scaffold_71066 (1625-1415) | |
| 67-254, gnl|mm7|chr11 (116247475-116247686) | |
| 67-254, gnl|Mm7|chr11 (116247672-116247485) | |
| 67-254, gnl|monDom2|scaffold_18 (33719815-33720038) | |
| 67-254, gnl|panTro1|chr19 (74770015-74770224) | |
| 67-254, gnl|rheMac2|chr16 (71222757-71222966) | |
| 67-254, gnl|rn3|chr10 (106259645-106259856) | |
| 67-254, gnl|tetNig1|chrUn_random (23111939-23111762) | |
| 67-254, gnl|xenTro1|scaffold_432 (128029-127803) | |
| 385-597, gnl|bosTau2|chr19 (49649284-49649496) | |
| 385-597, gnl|canFam2|chr9 (7707341-7707117) | |
| 385-597, gnl|danRer3|chrNA (242615701-242615918) | |
| 385-597, gnl|dasNov1|scaffold_22616 (4975-5199) | |
| 385-597, gnl|fr1|chrUn (253656954-253657173) | |
| 385-597, gnl|galGal2|chr18 (4427883-4427648) | |
| 385-597, gnl|hg17|chr17 (71409387-71409611) | |
| 385-597, gnl|Hg17|chr17 (71409599-71409387) | |
| 385-597, gnl|loxAfr1|scaffold_71066 (3518-3295) | |
| 385-597, gnl|mm7|chr11 (116243952-116244177) | |
| 385-597, gnl|Mm7|chr11 (116244164-116243952) | |
| 385-597, gnl|monDom2|scaffold_18 (33715421-33715649) | |
| 385-597, gnl|oryCun1|scaffold_30086 (1144-1368) | |
| 385-597, gnl|panTro1|chr19 (74767153-74767377) | |
| 385-597, gnl|rheMac2|chr16 (71219955-71220179) | |
| 385-597, gnl|rn3|chr10 (106256414-106256638) | |
| 385-597, gnl|xenTro1|scaffold_432 (129955-129731) | |
| 717-877, gnl|bosTau2|chr19 (49651174-49651334) | |
| 717-877, gnl|Hg17|chr17 (71407349-71407189) | |
| 717-877, gnl|Mm7|chr11 (116241945-116241785) | |
| 986-1323, gnl|bosTau2|chr19 (49651894-49652234) | |
| 986-1323, gnl|Hg17|chr17 (71406688-71406274) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-254, gnl|bosTau2|chr19 (49647943-49648130) | |
| 67-254, gnl|canFam2|chr9 (7704863-7704653) | |
| 67-254, gnl|danRer3|chrNA (242621139-242621325) | |
| 67-254, gnl|dasNov1|scaffold_22616 (6673-6883) | |
| 67-254, gnl|echTel1|scaffold_60809 (1019-1221) | |
| 67-254, gnl|fr1|chrUn (253657489-253657686) | |
| 67-254, gnl|galGal2|chr18 (4426719-4426490) | |
| 67-254, gnl|hg17|chr17 (71412195-71412414) | |
| 67-254, gnl|Hg17|chr17 (71412401-71412214) | |
| 67-254, gnl|loxAfr1|scaffold_71066 (1625-1415) | |
| 67-254, gnl|mm7|chr11 (116247475-116247686) | |
| 67-254, gnl|Mm7|chr11 (116247672-116247485) | |
| 67-254, gnl|monDom2|scaffold_18 (33719815-33720038) | |
| 67-254, gnl|panTro1|chr19 (74770015-74770224) | |
| 67-254, gnl|rheMac2|chr16 (71222757-71222966) | |
| 67-254, gnl|rn3|chr10 (106259645-106259856) | |
| 67-254, gnl|tetNig1|chrUn_random (23111939-23111762) | |
| 67-254, gnl|xenTro1|scaffold_432 (128029-127803) | |
| 385-597, gnl|bosTau2|chr19 (49649284-49649496) | |
| 385-597, gnl|canFam2|chr9 (7707341-7707117) | |
| 385-597, gnl|danRer3|chrNA (242615701-242615918) | |
| 385-597, gnl|dasNov1|scaffold_22616 (4975-5199) | |
| 385-597, gnl|fr1|chrUn (253656954-253657173) | |
| 385-597, gnl|galGal2|chr18 (4427883-4427648) | |
| 385-597, gnl|hg17|chr17 (71409387-71409611) | |
| 385-597, gnl|Hg17|chr17 (71409599-71409387) | |
| 385-597, gnl|loxAfr1|scaffold_71066 (3518-3295) | |
| 385-597, gnl|mm7|chr11 (116243952-116244177) | |
| 385-597, gnl|Mm7|chr11 (116244164-116243952) | |
| 385-597, gnl|monDom2|scaffold_18 (33715421-33715649) | |
| 385-597, gnl|oryCun1|scaffold_30086 (1144-1368) | |
| 385-597, gnl|panTro1|chr19 (74767153-74767377) | |
| 385-597, gnl|rheMac2|chr16 (71219955-71220179) | |
| 385-597, gnl|rn3|chr10 (106256414-106256638) | |
| 385-597, gnl|xenTro1|scaffold_432 (129955-129731) | |
| 717-877, gnl|bosTau2|chr19 (49651174-49651334) | |
| 717-877, gnl|Hg17|chr17 (71407349-71407189) | |
| 717-877, gnl|Mm7|chr11 (116241945-116241785) | |
| 986-1323, gnl|bosTau2|chr19 (49651894-49652234) | |
| 986-1323, gnl|Hg17|chr17 (71406688-71406274) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| che (0.408942) | |
| cly (0.361925) | |
| ill (0.351185) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| fli (0.202881) | |
| col (0.195008) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| ctl (0.153069) | |
| pty (0.142714) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.408942) | |
| cly (0.361925) | |
| ill (0.351185) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| fli (0.202881) | |
| col (0.195008) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| ctl (0.153069) | |
| pty (0.142714) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |