Non-Coding RNA Search

Ss1.1-Pig4-TMW8026O17.3

Sequence:


               
               GACTTTTATATGTACACTGACCATGTGATGTACATTTATTATGTCTTTTTTTAAAGAATG
GAAATATTTATTTCAGAGGCCTTATTTTTGGACATTTTTAGTGTAGTACTGTTGGCTCGT
ATTTAGAATATATAGCTACAGCAGTTTTGGACTGTTTAGTAGTCTTTGTTTTATGTTTTT
AAATACAGAAATTGATTTCACAAATTTGTACCACATGGTAATTCTAAGACTTGCTCTTTA
CCCATGGAATGTAATATTTTTGCAAAGATGGACCACTTCACAAATGGTTATAAAGTCATA
CCCACTTCTTCCACAGTGACCACAGCAAATGACCAAGCATGAACTAAAGGTAAAAGATGT
TTACAGATTACTTTTCTTACAAAAAAAAATCTAGAAGACACTGTGTTTAGACATTTAAAT
GTTTTTGAGATTTATTAACTGATTTTTTAGACACTGCCTATCGCATGAACTGTAAAGCTG
TGTGTGTTAGATGTAAATTATTTATAAGATGTATGGGCTGGAATTTGATTATTTCTCTCT
TTGGAAAAATAATTCTGAATTAATTTTAAAAAGTGTCTGGTAGCAATGATGGAACAGATC
ACTGAAAAGTAGATTTAGATGTTGTGAAAATAGTCATTAACAAACAGATTGGAATAAAGC
CTACTCTATCATTTAAACTACTTTAATACACATTCATTTTTAAAGAAAATACTTGTTTTA
ACATAAATAAACCAATTGTATCAGTGTTTGTGAATAAAATGCAAAAATGATTGTTAATGA
TTGGTGCTCTTCAAGTGAGCTTAAAAATCATCTAAGACCTCTATCCAAATTTGTCCTGTA
GTAATAGCTGTATTAATAGATTGTTGGTGTTTAAAGATCTGAAGTGTGAATAGAATGTAT
TCAGCTGTTTAACATGTAGTTTAGGTATTCAGAAGTATGCATGTAGAATTAAAAAATATG
TTCAAAATTAAATATTAATTTTAATATTTGGTTTGGAAAAGCATGTTATAATATAATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTTTATATGTACACTGACCATGTGATGTACATTTATTATGTCTTTTTTTAAAGAATG
GAAATATTTATTTCAGAGGCCTTATTTTTGGACATTTTTAGTGTAGTACTGTTGGCTCGT
ATTTAGAATATATAGCTACAGCAGTTTTGGACTGTTTAGTAGTCTTTGTTTTATGTTTTT
AAATACAGAAATTGATTTCACAAATTTGTACCACATGGTAATTCTAAGACTTGCTCTTTA
CCCATGGAATGTAATATTTTTGCAAAGATGGACCACTTCACAAATGGTTATAAAGTCATA
CCCACTTCTTCCACAGTGACCACAGCAAATGACCAAGCATGAACTAAAGGTAAAAGATGT
TTACAGATTACTTTTCTTACAAAAAAAAATCTAGAAGACACTGTGTTTAGACATTTAAAT
GTTTTTGAGATTTATTAACTGATTTTTTAGACACTGCCTATCGCATGAACTGTAAAGCTG
TGTGTGTTAGATGTAAATTATTTATAAGATGTATGGGCTGGAATTTGATTATTTCTCTCT
TTGGAAAAATAATTCTGAATTAATTTTAAAAAGTGTCTGGTAGCAATGATGGAACAGATC
ACTGAAAAGTAGATTTAGATGTTGTGAAAATAGTCATTAACAAACAGATTGGAATAAAGC
CTACTCTATCATTTAAACTACTTTAATACACATTCATTTTTAAAGAAAATACTTGTTTTA
ACATAAATAAACCAATTGTATCAGTGTTTGTGAATAAAATGCAAAAATGATTGTTAATGA
TTGGTGCTCTTCAAGTGAGCTTAAAAATCATCTAAGACCTCTATCCAAATTTGTCCTGTA
GTAATAGCTGTATTAATAGATTGTTGGTGTTTAAAGATCTGAAGTGTGAATAGAATGTAT
TCAGCTGTTTAACATGTAGTTTAGGTATTCAGAAGTATGCATGTAGAATTAAAAAATATG
TTCAAAATTAAATATTAATTTTAATATTTGGTTTGGAAAAGCATGTTATAATATAATGTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               508-1009, gnl|bosTau2|chr17 (21392127-21391640)
               

               
               508-1009, gnl|Hg17|chr9 (100418957-100419453)
               

               
               508-1009, gnl|Mm7|chr4 (48676425-48676925)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               508-1009, gnl|bosTau2|chr17 (21392127-21391640)
               

               
               508-1009, gnl|Hg17|chr9 (100418957-100419453)
               

               
               508-1009, gnl|Mm7|chr4 (48676425-48676925)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

	508-1009, gnl\|bosTau2\|chr17 (21392127-21391640)
	508-1009, gnl\|Hg17\|chr9 (100418957-100419453)
	508-1009, gnl\|Mm7\|chr4 (48676425-48676925)