Non-Coding RNA Search

Ss1.1-Pig4-TMW8026P06.3

Sequence:


               
               GTAGACTGGCTTCAAGATCAGATCCAGGCTGTGAAGACATGAAAACATAGCTTTTGGAAA
TTGCAACAATTTTCAATTCAAGGAATATGTCTTAAGGCAAACTGAATGCTTTAAATTTTT
TTAAAGATATTTGTACTTCTAAAAATACTTTATAATCTTCTGCTTGCATGTATGGACTCT
GAGGTTTTTAGAACATGGAACTTCAGGTATGCTAAGCTGGCCATTAATTATATGAACACT
AAATCTTTCCTCAGAAGGGCTCCCTTCCCAGAATTATCAACTTCTTGGTAAAGGTCTACA
TTTGATTGTATTAGAATGTTTAAATTCAGAGTTATCGCAATATCTCATCATGATTTATGA
TATCTTTTATTTTTTGTCTTCTAAAAATTTAGTTTATGATGTGACTTTGTAGTCATGATT
GTGCTTGTGAAAAGAACTTTAAATATTTATAAAGGACTGTGGGTAATTAATATATGTTAA
AGTTTTATAATTATATGTCACCATCAATAAAACAAAATCAATCAGCTAGTGGGATTGGTA
TGTCAAAAAGAATAATGCTGTTTGTTAATATGGTATTTGGTGTTTTGTTGTCAAACATTT
GTAAATTATCTGAGACCAAGTTAAGCAGAATTTACTTATCTCGTAAATATGTATGAAACA
TCTCTTCTCCTCTACTAGTTAGACGTTGTCCTAGGCAGTGGTAAATAAAATGTATTCCTT
ATCAGAGAATTTAAATTTAGTAAAGGAAAATTTGAGAATTTTTTATACATGGTATCTAAT
TTTATTTCATTGGCTGATTTAAAACATTGCATCTTCAAATGAACCTATATACAAAACAAA
AACAGACTCACAGACATAGAGAACAGACTTGTGGTCGCCAAGGGGTAGGGGGAGAGAGTG
GGATGGACTGGAAATTTGGAGTTACTAGACGCAAACTGTTAGAATGGATAAGCAGTGAGG
TCCTACTGTATCGCACAGGGAACAATATCCAGTCTCCTGGGATAGACCATGCTGAAAGAT
AATATAAGAAAGGGAATGTATGTATATGTATATATGGCTGGGTCACTTTGCTGTACTGCA
GAAACTGGCACAACATGGTATATAAACTGAACTTTAATTAAAAAATTTTTAAAGGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGACTGGCTTCAAGATCAGATCCAGGCTGTGAAGACATGAAAACATAGCTTTTGGAAA
TTGCAACAATTTTCAATTCAAGGAATATGTCTTAAGGCAAACTGAATGCTTTAAATTTTT
TTAAAGATATTTGTACTTCTAAAAATACTTTATAATCTTCTGCTTGCATGTATGGACTCT
GAGGTTTTTAGAACATGGAACTTCAGGTATGCTAAGCTGGCCATTAATTATATGAACACT
AAATCTTTCCTCAGAAGGGCTCCCTTCCCAGAATTATCAACTTCTTGGTAAAGGTCTACA
TTTGATTGTATTAGAATGTTTAAATTCAGAGTTATCGCAATATCTCATCATGATTTATGA
TATCTTTTATTTTTTGTCTTCTAAAAATTTAGTTTATGATGTGACTTTGTAGTCATGATT
GTGCTTGTGAAAAGAACTTTAAATATTTATAAAGGACTGTGGGTAATTAATATATGTTAA
AGTTTTATAATTATATGTCACCATCAATAAAACAAAATCAATCAGCTAGTGGGATTGGTA
TGTCAAAAAGAATAATGCTGTTTGTTAATATGGTATTTGGTGTTTTGTTGTCAAACATTT
GTAAATTATCTGAGACCAAGTTAAGCAGAATTTACTTATCTCGTAAATATGTATGAAACA
TCTCTTCTCCTCTACTAGTTAGACGTTGTCCTAGGCAGTGGTAAATAAAATGTATTCCTT
ATCAGAGAATTTAAATTTAGTAAAGGAAAATTTGAGAATTTTTTATACATGGTATCTAAT
TTTATTTCATTGGCTGATTTAAAACATTGCATCTTCAAATGAACCTATATACAAAACAAA
AACAGACTCACAGACATAGAGAACAGACTTGTGGTCGCCAAGGGGTAGGGGGAGAGAGTG
GGATGGACTGGAAATTTGGAGTTACTAGACGCAAACTGTTAGAATGGATAAGCAGTGAGG
TCCTACTGTATCGCACAGGGAACAATATCCAGTCTCCTGGGATAGACCATGCTGAAAGAT
AATATAAGAAAGGGAATGTATGTATATGTATATATGGCTGGGTCACTTTGCTGTACTGCA
GAAACTGGCACAACATGGTATATAAACTGAACTTTAATTAAAAAATTTTTAAAGGAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-823, gnl|bosTau2|chr1 (21946229-21947071)
               

               
               15-823, gnl|Hg17|chr3 (98999556-99000377)
               

               
               15-823, gnl|Mm7|chr16 (59549717-59548867)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-823, gnl|bosTau2|chr1 (21946229-21947071)
               

               
               15-823, gnl|Hg17|chr3 (98999556-99000377)
               

               
               15-823, gnl|Mm7|chr16 (59549717-59548867)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cty (0.31224)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	15-823, gnl\|bosTau2\|chr1 (21946229-21947071)
	15-823, gnl\|Hg17\|chr3 (98999556-99000377)
	15-823, gnl\|Mm7\|chr16 (59549717-59548867)

	cty (0.31224)
	ret (0.257467)
	cbe (0.239234)
	nlu (0.191681)
	cmu (0.186393)
	sto (0.179824)
	eye (0.170503)
	fco (0.157208)
	liv (0.146284)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	tra (0.123092)
	eje (0.0988338)