Non-Coding RNA Search

Ss1.1-Pig4-TMW8026P09.3

Sequence:


               
               GCTTTCCTCTGACAATCGCAGGGTTTCCCCCCCCCCCCATTTTTGTAGATTGGATTAGAT
ATTTGGCATCAAAGCTAAGAAATTCTTGTATTTCCCAGATTACATTAAGGGTAATTGCAA
TTAAATTGCTGAAATGCATCAGGATTAAGCTTCAATAATATGTCATGGGGACTAATTGGC
CAACAAAGCCAGTTATTTTTCCTTCCTCTCTGGCAGGGCACTTGATCCATTCCAAAGTCA
AAAACTGGACTGAAGCTAATTTGTACTTTTCATAATAGACATTCTGCTTCCGGCTTACCT
TATTGGTACATTACATCAGTATATTAATTGTAAAGTTTATTGTATAGTATTTAACCACTG
AATTTCTTATGTTGTGCTTATGTGAACTCCTGGTGAAGGTCCCAGTTCCCTTGGATAATG
TGTAGTTATATATCTCTTTTTAAATGTACAGATATTTTGCTATAAAATTGGTGCAGTTTT
TTATGGTTTTTACACTTCTCTTTAATTCCCACCTAAAACTCTGGGTAATATTGTAAATAT
TGTTTAAAGATGCATCAGCTTATGCTATACAATCTGAATGTTATTTTAACTTATAGTTTT
TTTTAATATATATATTTAACTACAAGGACAGTTTAGGGATCAGTTACATTTCACTTTAGC
GTATCTATTTACATAAAGATTAAACTGCCACTTGCTAGCACATTTCCATAAATGTGTACC
TTAAAAAAGAACATGCCAAGATTTTGTCTGACTAAACATTCATTTTCATGGAGGGAAAAA
AAAAGCAATTTGACAATGAGATGTAACAGAGTTGGTCCTTTAGTGCAAGCAGCTGTTTTC
CAGAGCTCAATACTGATGAACATGTTAAAATAATTGCCTATTTATTAATCTACACATAAG
AGAATAATGTTGGCATGTTCTTTTCTGTTTGTCTCTTAATGGGCCTGCTTCTTAGCAATA
TTAGAAATGTTTTATAAAAGCAGTTCATGTTACTTTCCTGGTCTTTTCATGGCATATGAG
CAAATAAACTATTTACACTACTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTCCTCTGACAATCGCAGGGTTTCCCCCCCCCCCCATTTTTGTAGATTGGATTAGAT
ATTTGGCATCAAAGCTAAGAAATTCTTGTATTTCCCAGATTACATTAAGGGTAATTGCAA
TTAAATTGCTGAAATGCATCAGGATTAAGCTTCAATAATATGTCATGGGGACTAATTGGC
CAACAAAGCCAGTTATTTTTCCTTCCTCTCTGGCAGGGCACTTGATCCATTCCAAAGTCA
AAAACTGGACTGAAGCTAATTTGTACTTTTCATAATAGACATTCTGCTTCCGGCTTACCT
TATTGGTACATTACATCAGTATATTAATTGTAAAGTTTATTGTATAGTATTTAACCACTG
AATTTCTTATGTTGTGCTTATGTGAACTCCTGGTGAAGGTCCCAGTTCCCTTGGATAATG
TGTAGTTATATATCTCTTTTTAAATGTACAGATATTTTGCTATAAAATTGGTGCAGTTTT
TTATGGTTTTTACACTTCTCTTTAATTCCCACCTAAAACTCTGGGTAATATTGTAAATAT
TGTTTAAAGATGCATCAGCTTATGCTATACAATCTGAATGTTATTTTAACTTATAGTTTT
TTTTAATATATATATTTAACTACAAGGACAGTTTAGGGATCAGTTACATTTCACTTTAGC
GTATCTATTTACATAAAGATTAAACTGCCACTTGCTAGCACATTTCCATAAATGTGTACC
TTAAAAAAGAACATGCCAAGATTTTGTCTGACTAAACATTCATTTTCATGGAGGGAAAAA
AAAAGCAATTTGACAATGAGATGTAACAGAGTTGGTCCTTTAGTGCAAGCAGCTGTTTTC
CAGAGCTCAATACTGATGAACATGTTAAAATAATTGCCTATTTATTAATCTACACATAAG
AGAATAATGTTGGCATGTTCTTTTCTGTTTGTCTCTTAATGGGCCTGCTTCTTAGCAATA
TTAGAAATGTTTTATAAAAGCAGTTCATGTTACTTTCCTGGTCTTTTCATGGCATATGAG
CAAATAAACTATTTACACTACTTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-1042, gnl|bosTau2|chr2 (9491085-9492125)
               

               
               7-1042, gnl|Hg17|chr2 (153330806-153331847)
               

               
               7-1042, gnl|Mm7|chr2 (53140095-53141114)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1042, gnl|bosTau2|chr2 (9491085-9492125)
               

               
               7-1042, gnl|Hg17|chr2 (153330806-153331847)
               

               
               7-1042, gnl|Mm7|chr2 (53140095-53141114)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               kid (0.259471)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	7-1042, gnl\|bosTau2\|chr2 (9491085-9492125)
	7-1042, gnl\|Hg17\|chr2 (153330806-153331847)
	7-1042, gnl\|Mm7\|chr2 (53140095-53141114)

	kid (0.259471)
	ebs (0.236602)
	ece (0.229305)
	aor (0.195274)
	fhi (0.169578)
	fco (0.157208)
	fat (0.147427)
	spl (0.143184)
	sug (0.127291)
	eru (0.120048)
	ecc (0.115035)