Non-Coding RNA Search

Ss1.1-Pig4-TMW8026P11.3

Sequence:


               
               TTTGCCCCTCAGTTTTCTGGCTACCAGCAGCAAGACTCTCAGGAGCTCTTAGCCTTTCTT
CTAGACGGATTGCATGAAGATCTGAACCGAGTGAAGAAAAAACCCTACCTGGAGCTGAAG
GATGCCAATGGGCGGCCAGATGCGGCGGTGGCAAAGGAAGCCTGGGAGAATCATAGGCTA
AGGAATGACTCTGTGATTGTGGACACGTTCCATGGCCTCTTCAAATCTACTTTGGTTTGC
CCAGAGTGCGCTAAGATTTCTGTGACCTTTGACCCATTTTGCTATCTAACTCTCCCCCTG
CCCTTGAAGAAAGATCGAGTTATGGAGATCTTCCTGGTTCCTGCTGACCCTCACTGCAGG
CCTACCCAGTACCGCGTAATTGTGCCGCTAATGGGTGCTGTATCTGATCTGTGCGAGGCT
CTCTCCAGGTTGTCTGGCGTTGCTGCAGAAAACATGGTGGTCACAGATGTGTATAATCAC
CGGTTCCACAAAATTTTCCAAATGGATGAAGGTTTAAACCACATCATGCCTCGGGATGAT
ATTTTTGTGTACGAGGTCTGCAGCACCTCCATGGATGGCTCTGAATGTATCACGCTTCCT
GTGTACTTCAGGGAGAGGAAGTCCAGGCCGTCGAGCACTTCCACCGGGGCGGTGCTGTAT
GGGCAGCCTCTGTTGGTTTCTGTCCCAAAGCACAAGCTCACCCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCCCCTCAGTTTTCTGGCTACCAGCAGCAAGACTCTCAGGAGCTCTTAGCCTTTCTT
CTAGACGGATTGCATGAAGATCTGAACCGAGTGAAGAAAAAACCCTACCTGGAGCTGAAG
GATGCCAATGGGCGGCCAGATGCGGCGGTGGCAAAGGAAGCCTGGGAGAATCATAGGCTA
AGGAATGACTCTGTGATTGTGGACACGTTCCATGGCCTCTTCAAATCTACTTTGGTTTGC
CCAGAGTGCGCTAAGATTTCTGTGACCTTTGACCCATTTTGCTATCTAACTCTCCCCCTG
CCCTTGAAGAAAGATCGAGTTATGGAGATCTTCCTGGTTCCTGCTGACCCTCACTGCAGG
CCTACCCAGTACCGCGTAATTGTGCCGCTAATGGGTGCTGTATCTGATCTGTGCGAGGCT
CTCTCCAGGTTGTCTGGCGTTGCTGCAGAAAACATGGTGGTCACAGATGTGTATAATCAC
CGGTTCCACAAAATTTTCCAAATGGATGAAGGTTTAAACCACATCATGCCTCGGGATGAT
ATTTTTGTGTACGAGGTCTGCAGCACCTCCATGGATGGCTCTGAATGTATCACGCTTCCT
GTGTACTTCAGGGAGAGGAAGTCCAGGCCGTCGAGCACTTCCACCGGGGCGGTGCTGTAT
GGGCAGCCTCTGTTGGTTTCTGTCCCAAAGCACAAGCTCACCCTCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BX45_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BX45_MOUSE

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-145, gnl|bosTau2|chr22 (37768243-37768099)
               

               
               1-145, gnl|canFam2|chr20 (42934165-42933980)
               

               
               1-145, gnl|danRer3|chr6 (25335142-25335329)
               

               
               1-145, gnl|dasNov1|scaffold_72051 (41634-41804)
               

               
               1-145, gnl|echTel1|scaffold_159529 (2591-2778)
               

               
               1-145, gnl|fr1|chrUn (191065932-191065746)
               

               
               1-145, gnl|galGal2|chr12 (2505132-2505316)
               

               
               1-145, gnl|hg17|chr3 (49314819-49315004)
               

               
               1-145, gnl|Hg17|chr3 (49314964-49314820)
               

               
               1-145, gnl|loxAfr1|scaffold_33212 (13098-13283)
               

               
               1-145, gnl|mm7|chr9 (108104669-108104484)
               

               
               1-145, gnl|Mm7|chr9 (108104522-108104666)
               

               
               1-145, gnl|monDom2|scaffold_5 (75941362-75941177)
               

               
               1-145, gnl|oryCun1|scaffold_172710 (28434-28249)
               

               
               1-145, gnl|panTro1|chr2 (50838259-50838444)
               

               
               1-145, gnl|rheMac2|chr2 (87145081-87144896)
               

               
               1-145, gnl|rn3|chr16_random (1095982-1095797)
               

               
               1-145, gnl|tetNig1|chr11 (6196378-6196552)
               

               
               1-145, gnl|xenTro1|scaffold_193 (1005100-1004921)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr22 (37768243-37768099)
               

               
               1-145, gnl|canFam2|chr20 (42934165-42933980)
               

               
               1-145, gnl|danRer3|chr6 (25335142-25335329)
               

               
               1-145, gnl|dasNov1|scaffold_72051 (41634-41804)
               

               
               1-145, gnl|echTel1|scaffold_159529 (2591-2778)
               

               
               1-145, gnl|fr1|chrUn (191065932-191065746)
               

               
               1-145, gnl|galGal2|chr12 (2505132-2505316)
               

               
               1-145, gnl|hg17|chr3 (49314819-49315004)
               

               
               1-145, gnl|Hg17|chr3 (49314964-49314820)
               

               
               1-145, gnl|loxAfr1|scaffold_33212 (13098-13283)
               

               
               1-145, gnl|mm7|chr9 (108104669-108104484)
               

               
               1-145, gnl|Mm7|chr9 (108104522-108104666)
               

               
               1-145, gnl|monDom2|scaffold_5 (75941362-75941177)
               

               
               1-145, gnl|oryCun1|scaffold_172710 (28434-28249)
               

               
               1-145, gnl|panTro1|chr2 (50838259-50838444)
               

               
               1-145, gnl|rheMac2|chr2 (87145081-87144896)
               

               
               1-145, gnl|rn3|chr16_random (1095982-1095797)
               

               
               1-145, gnl|tetNig1|chr11 (6196378-6196552)
               

               
               1-145, gnl|xenTro1|scaffold_193 (1005100-1004921)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-145, gnl\|bosTau2\|chr22 (37768243-37768099)
	1-145, gnl\|canFam2\|chr20 (42934165-42933980)
	1-145, gnl\|danRer3\|chr6 (25335142-25335329)
	1-145, gnl\|dasNov1\|scaffold_72051 (41634-41804)
	1-145, gnl\|echTel1\|scaffold_159529 (2591-2778)
	1-145, gnl\|fr1\|chrUn (191065932-191065746)
	1-145, gnl\|galGal2\|chr12 (2505132-2505316)
	1-145, gnl\|hg17\|chr3 (49314819-49315004)
	1-145, gnl\|Hg17\|chr3 (49314964-49314820)
	1-145, gnl\|loxAfr1\|scaffold_33212 (13098-13283)
	1-145, gnl\|mm7\|chr9 (108104669-108104484)
	1-145, gnl\|Mm7\|chr9 (108104522-108104666)
	1-145, gnl\|monDom2\|scaffold_5 (75941362-75941177)
	1-145, gnl\|oryCun1\|scaffold_172710 (28434-28249)
	1-145, gnl\|panTro1\|chr2 (50838259-50838444)
	1-145, gnl\|rheMac2\|chr2 (87145081-87144896)
	1-145, gnl\|rn3\|chr16_random (1095982-1095797)
	1-145, gnl\|tetNig1\|chr11 (6196378-6196552)
	1-145, gnl\|xenTro1\|scaffold_193 (1005100-1004921)