Non-Coding RNA Search

Ss1.1-Pig4-TMW8026P19.5

Sequence:


               
               AATCCCGCTGCAGCCATTGCCGCAACCACGATGCCGAAACGAAAGAAGCAGACTCAGCAG
CAGCAGCCTCCGCATCAGCAGCCCCCACTGACAGAGCGGGAAGAGACTGGAGATGAGGAG
GATGGGAGTCCCATCGGACCACCCAGCCTTCTGGGTCCTCCCCCCATGGCCAATGGAAAG
CCTGGTGACCCCAAGTCAGCCCCACACTGGAATCCACCCACATGTCCACCATCAGTAGAA
TGGATAAATAAGGTGTTGTGTGTGCATCCAATGGGATACTACACTGCAGTGAAAATGAAG
GCACTCCTGCTACAGGCATCCTGGATGAATCTCATAAACACGATGTTGAGCAAAAGGACC
AGACACAAAAGAATGCAGACTGTAAATCCGACCGCCCCGTCTGCCGACACTTTGCCAAAA
AAGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCTGGCGCCAATGGACCTC
CTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCCCGCTGGCCTAGTGGCCGTG
TACTTCCCTGTGGCCCTGTGGTGGCTACTGTGAGGCTGTTCCACCCAGCACCTCGGTCCA
TGACGCCCACCCTCATCGCCACCTCCGCCACTTGGGGTCGAGTCGTGTTCATCACTGGTG
CGCGGTTGCACTCTTTCTTCTGGTCCAGCCTCCAGAGACTCATCTCCAGGACCCCAACTT
TGCTCCATAGAGCTGCCTCCTGGATCCTCTTCCCCCTCCAACTGACTGCAGAACAGGAAA
CCTCTCTGGTGCTGTTTCTCGTGCATCTGTCCACCCAGTTCCCGGTATCGCCCTGGTTCC
TGAGAGCCTTGGAGCAGTTTCCTACCATTCCCTTCTTCTAGCTGCTTGTTTTCAGTCCTT
TTTATGTGACACCCCCTCCCCCCCGGTGTCGTCAGCTGCTCTGTGACATTCACCGGGTCC
TCTGACCTGGGGTCAAGTTTGGCTGACTGGTACAGAGTTACTCCCTGAGAGGCCACCTGC
CCTGCTCTTGGATTTCATAGTTTCTCCGTCAGTAGCATGATCCCCACCGCAACGGTCTGT
GATCACTGTGCTTTGTGAAACTGTGCATCCCCTCGTAACCTTTCTCAGTGTCCGTGGCAT
TTCTGTGACCTCCCAACACTAGAGTAAGTTCTTCTGCCAAAATGAGTGGGACCGTTGATG
CCCTCCAGACCTTCCCCACCTCCTAACACGGGACAATTGTGACACCTTCCACAAGACTGC
CTTGCCGCTCCTCCCCAGGTCCTGGTGTCAGTTTCTCTGGGTTGGACACAGGCCTGAGAG
ATGTCCTGTAGAGCCCCAGAGGGGCCCACCCTGTCTCCTCTCCAGCCCGTTTTAGTTAGA
CGACATCATTGTGAGGCCACCAGCCCTTTCGTTTGAATCCTGTGAATCTCCACCTGGCCT
GCCTATGGGTAGGATATTGGACAGTACTGTCGCCGCCTCCGAGCCTTCTTTCCCTGCATC
CCTGGCACTGATTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCC
TGAGGAAATGGGTCAGGAGTTGTGTGGGCAAGAGGGAAGGATGAGAGCCGTTGGAAAATT
GAGATTGAATTTTTTTTTCTTTTTAGCATTTTTTTATATTAGTAATAAACACACTGGAAA
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCCGCTGCAGCCATTGCCGCAACCACGATGCCGAAACGAAAGAAGCAGACTCAGCAG
CAGCAGCCTCCGCATCAGCAGCCCCCACTGACAGAGCGGGAAGAGACTGGAGATGAGGAG
GATGGGAGTCCCATCGGACCACCCAGCCTTCTGGGTCCTCCCCCCATGGCCAATGGAAAG
CCTGGTGACCCCAAGTCAGCCCCACACTGGAATCCACCCACATGTCCACCATCAGTAGAA
TGGATAAATAAGGTGTTGTGTGTGCATCCAATGGGATACTACACTGCAGTGAAAATGAAG
GCACTCCTGCTACAGGCATCCTGGATGAATCTCATAAACACGATGTTGAGCAAAAGGACC
AGACACAAAAGAATGCAGACTGTAAATCCGACCGCCCCGTCTGCCGACACTTTGCCAAAA
AAGGCCACTGTCGATATGAGGACCTCTGTGCCTTCTACCACCCTGGCGCCAATGGACCTC
CTCTGTGAGACTGTGCCTTCCCATCCAGGCTGGAAGGAGCCCGCTGGCCTAGTGGCCGTG
TACTTCCCTGTGGCCCTGTGGTGGCTACTGTGAGGCTGTTCCACCCAGCACCTCGGTCCA
TGACGCCCACCCTCATCGCCACCTCCGCCACTTGGGGTCGAGTCGTGTTCATCACTGGTG
CGCGGTTGCACTCTTTCTTCTGGTCCAGCCTCCAGAGACTCATCTCCAGGACCCCAACTT
TGCTCCATAGAGCTGCCTCCTGGATCCTCTTCCCCCTCCAACTGACTGCAGAACAGGAAA
CCTCTCTGGTGCTGTTTCTCGTGCATCTGTCCACCCAGTTCCCGGTATCGCCCTGGTTCC
TGAGAGCCTTGGAGCAGTTTCCTACCATTCCCTTCTTCTAGCTGCTTGTTTTCAGTCCTT
TTTATGTGACACCCCCTCCCCCCCGGTGTCGTCAGCTGCTCTGTGACATTCACCGGGTCC
TCTGACCTGGGGTCAAGTTTGGCTGACTGGTACAGAGTTACTCCCTGAGAGGCCACCTGC
CCTGCTCTTGGATTTCATAGTTTCTCCGTCAGTAGCATGATCCCCACCGCAACGGTCTGT
GATCACTGTGCTTTGTGAAACTGTGCATCCCCTCGTAACCTTTCTCAGTGTCCGTGGCAT
TTCTGTGACCTCCCAACACTAGAGTAAGTTCTTCTGCCAAAATGAGTGGGACCGTTGATG
CCCTCCAGACCTTCCCCACCTCCTAACACGGGACAATTGTGACACCTTCCACAAGACTGC
CTTGCCGCTCCTCCCCAGGTCCTGGTGTCAGTTTCTCTGGGTTGGACACAGGCCTGAGAG
ATGTCCTGTAGAGCCCCAGAGGGGCCCACCCTGTCTCCTCTCCAGCCCGTTTTAGTTAGA
CGACATCATTGTGAGGCCACCAGCCCTTTCGTTTGAATCCTGTGAATCTCCACCTGGCCT
GCCTATGGGTAGGATATTGGACAGTACTGTCGCCGCCTCCGAGCCTTCTTTCCCTGCATC
CCTGGCACTGATTGTTTTCTGTGAAAACAGCAGTGAACAGGTTCAGTTTTGAACTGGCCC
TGAGGAAATGGGTCAGGAGTTGTGTGGGCAAGAGGGAAGGATGAGAGCCGTTGGAAAATT
GAGATTGAATTTTTTTTTCTTTTTAGCATTTTTTTATATTAGTAATAAACACACTGGAAA
CAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5STN7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5STN7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1484-1603, + strand, RNAz p=0.994286

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1484-1603, + strand, RNAz p=0.994286

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1484-1603, DB813545 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813545.1|), blast E-value=0, identity=100% 
               

               
               1484-1603, DB820180 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820180.1|), blast E-value=0, identity=100% 
               

               
               1484-1603, 496975 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM031543.1|), 
blast E-value=0, identity=96.67% 
               

               
               1484-1603, 524699 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM285931.1|), 
blast E-value=0, identity=96.67% 
               

               
               1484-1603, 961610 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK773017.1|), 
blast E-value=0, identity=96.67% 
               

               
               1484-1603, 1592524 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY460448.1|), blast E-value=0, identity=96.67%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1484-1603, DB813545 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813545.1|), blast E-value=0, identity=100% 
               

               
               1484-1603, DB820180 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820180.1|), blast E-value=0, identity=100% 
               

               
               1484-1603, 496975 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM031543.1|), 
blast E-value=0, identity=96.67% 
               

               
               1484-1603, 524699 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM285931.1|), 
blast E-value=0, identity=96.67% 
               

               
               1484-1603, 961610 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK773017.1|), 
blast E-value=0, identity=96.67% 
               

               
               1484-1603, 1592524 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY460448.1|), blast E-value=0, identity=96.67%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK131382, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK131382, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               384-1683, gnl|bosTau2|chr23 (20917677-20916392)
               

               
               384-1683, gnl|Hg17|chr6 (30638147-30639466)
               

               
               384-1683, gnl|Mm7|chr17 (34077843-34076584)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               384-1683, gnl|bosTau2|chr23 (20917677-20916392)
               

               
               384-1683, gnl|Hg17|chr6 (30638147-30639466)
               

               
               384-1683, gnl|Mm7|chr17 (34077843-34076584)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fcc (0.39557)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1484-1603, DB813545 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB813545.1\|), blast E-value=0, identity=100%
	1484-1603, DB820180 full-length enriched swine cDNA library, adult uterus Sus (dbj\|DB820180.1\|), blast E-value=0, identity=100%
	1484-1603, 496975 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM031543.1\|), blast E-value=0, identity=96.67%
	1484-1603, 524699 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM285931.1\|), blast E-value=0, identity=96.67%
	1484-1603, 961610 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK773017.1\|), blast E-value=0, identity=96.67%
	1484-1603, 1592524 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY460448.1\|), blast E-value=0, identity=96.67%

	384-1683, gnl\|bosTau2\|chr23 (20917677-20916392)
	384-1683, gnl\|Hg17\|chr6 (30638147-30639466)
	384-1683, gnl\|Mm7\|chr17 (34077843-34076584)

	fcc (0.39557)
	cty (0.20816)
	ill (0.175593)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	cag (0.151194)
	spl (0.143184)
	lnt (0.142308)
	ese (0.126502)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)