Ss1.1-Pig4-TMW8026P21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTAGACTGCTGAGCAACATGACATAAACCTTAGGTGGAGCCACTCTTCCTCATTAGAA TAAAGTCAACAGATTGAACTCAATTATAAATAGGAAAAAAAATGTGCCCTTGGCCACTGA GTGTTGCTGAGAGGGAAGACTGGCTGGAGGACTCTGGTGTAGCGGTGAGAAATATTGGAG CATGAGTTTCAAGTCACAATCCATCGGGATCATCGGAGCTCCTTTCTCCAAGGGTCAGCC ACGAGGAGGGGTGGAAGAAGGCCCTACAGCATTGAGAAAGGCTGGTCTGCTTGAGAAACT TAAAGAACAAGAGTGTGATGTGAAAGATTACGGGGACCTGTGCTTTGCTGATGTCCCTAA TGACACTCCCTTTCAAATAGTGAAGAATCCAAGGTCTGTGGGAAAAGCAAATCAACAGCT GGCTGATGTGGTGGCAGAAATCAAGAAGAACGGAAGGACCAGCCTTGTACTGGGCGGAGA CCACAGTATGGCGATTGGCAGCATCTCTGGCCATGCCAGGGTCCACCCAGATCTCTGTGT CATTTGGGTGGATGCTCACACCGACATCAACACTCCACTGACAACCACGACCGGGAACTT ACATGGACAGCCTGTGTCTTTTCTCCTGAAGGAACTAAAGGAAAAGATTCCCGAGGTCCC AGGACTTTCCTGGGTGACTCCCTGCCTATCTGCCAAAGATATTGTGTATATTGGCCTGAG AGACGTGGACCCTGCAGAACACTATATTTTGAAAACTCTGGGCATTAAATACTTTTCAAT GATTGAAGTGGATAAGCTGGGAATTGGCAAGGTGATGGAAGAAGCATTCAGCTATCTACT AGGAAGAAAGAAAAGGCCAATTCATTTGAGCTTTGATGTGGATGGACTGGATCCATTTTT CACACCGGCCACTGGCACACCAGTCCATGGAGGTCTGTCTTATAGAGAAGGTATCTACAT CACGGAAGAAATTTACAAAACAGGGCTACTGTCAGGATTAGATATCATGGAAGTGAATCC ATCTCTGGGGAAGACACCAGAAGAAGTAACTCGGACGGTGAACACGGCAGTAGCACTGGT CTTGGCTTGTTTTGGAGTTGCTCGGGAGGGTAACCATAAGCCTATTGATTACCTGAAACC ACCTAAGTAAATGGAAACATTACATGAAAATCTCACAGCTGATGACATAATTAGCAAATC TAACAGTTTAGTTAAACTTACAGTTATCTTCCCGATTGGACTTTCAGAAAAATGTTTTGC CCTGGTAAATATGAGTACCATTAGTATAAACTGTATCAATTCCCTCTTGGTGTGAAAATC AAGATATGGAACTGCTAGCTTTTGTGAAATTAAAAAACTTATTATTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTAGACTGCTGAGCAACATGACATAAACCTTAGGTGGAGCCACTCTTCCTCATTAGAA TAAAGTCAACAGATTGAACTCAATTATAAATAGGAAAAAAAATGTGCCCTTGGCCACTGA GTGTTGCTGAGAGGGAAGACTGGCTGGAGGACTCTGGTGTAGCGGTGAGAAATATTGGAG CATGAGTTTCAAGTCACAATCCATCGGGATCATCGGAGCTCCTTTCTCCAAGGGTCAGCC ACGAGGAGGGGTGGAAGAAGGCCCTACAGCATTGAGAAAGGCTGGTCTGCTTGAGAAACT TAAAGAACAAGAGTGTGATGTGAAAGATTACGGGGACCTGTGCTTTGCTGATGTCCCTAA TGACACTCCCTTTCAAATAGTGAAGAATCCAAGGTCTGTGGGAAAAGCAAATCAACAGCT GGCTGATGTGGTGGCAGAAATCAAGAAGAACGGAAGGACCAGCCTTGTACTGGGCGGAGA CCACAGTATGGCGATTGGCAGCATCTCTGGCCATGCCAGGGTCCACCCAGATCTCTGTGT CATTTGGGTGGATGCTCACACCGACATCAACACTCCACTGACAACCACGACCGGGAACTT ACATGGACAGCCTGTGTCTTTTCTCCTGAAGGAACTAAAGGAAAAGATTCCCGAGGTCCC AGGACTTTCCTGGGTGACTCCCTGCCTATCTGCCAAAGATATTGTGTATATTGGCCTGAG AGACGTGGACCCTGCAGAACACTATATTTTGAAAACTCTGGGCATTAAATACTTTTCAAT GATTGAAGTGGATAAGCTGGGAATTGGCAAGGTGATGGAAGAAGCATTCAGCTATCTACT AGGAAGAAAGAAAAGGCCAATTCATTTGAGCTTTGATGTGGATGGACTGGATCCATTTTT CACACCGGCCACTGGCACACCAGTCCATGGAGGTCTGTCTTATAGAGAAGGTATCTACAT CACGGAAGAAATTTACAAAACAGGGCTACTGTCAGGATTAGATATCATGGAAGTGAATCC ATCTCTGGGGAAGACACCAGAAGAAGTAACTCGGACGGTGAACACGGCAGTAGCACTGGT CTTGGCTTGTTTTGGAGTTGCTCGGGAGGGTAACCATAAGCCTATTGATTACCTGAAACC ACCTAAGTAAATGGAAACATTACATGAAAATCTCACAGCTGATGACATAATTAGCAAATC TAACAGTTTAGTTAAACTTACAGTTATCTTCCCGATTGGACTTTCAGAAAAATGTTTTGC CCTGGTAAATATGAGTACCATTAGTATAAACTGTATCAATTCCCTCTTGGTGTGAAAATC AAGATATGGAACTGCTAGCTTTTGTGAAATTAAAAAACTTATTATTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 33-238, gnl|bosTau2|chr9 (40002834-40003034) | |
| 33-238, gnl|Hg17|chr6 (131935979-131936172) | |
| 33-238, gnl|Mm7|chr10 (24680178-24679970) | |
| 484-646, gnl|bosTau2|chr10 (53636887-53637049) | |
| 484-646, gnl|canFam2|chr8 (44649552-44649762) | |
| 484-646, gnl|canFam2|chr8 (44649595-44649751) | |
| 484-646, gnl|danRer3|chr12 (8645053-8644893) | |
| 484-646, gnl|danRer3|chr13 (34696146-34695972) | |
| 484-646, gnl|dasNov1|scaffold_145978 (1891-1683) | |
| 484-646, gnl|dasNov1|scaffold_89837 (3815-3656) | |
| 484-646, gnl|echTel1|scaffold_308673 (64313-64101) | |
| 484-646, gnl|echTel1|scaffold_308673 (64269-64109) | |
| 484-646, gnl|fr1|chrUn (278839641-278839446) | |
| 484-646, gnl|fr1|chrUn (278839614-278839454) | |
| 484-646, gnl|galGal2|chr5 (25781593-25781798) | |
| 484-646, gnl|hg17|chr14 (67182070-67182279) | |
| 484-646, gnl|Hg17|chr14 (67182110-67182272) | |
| 484-646, gnl|hg17|chr6 (100732096-100732255) | |
| 484-646, gnl|loxAfr1|scaffold_24121 (10765-10975) | |
| 484-646, gnl|loxAfr1|scaffold_24121 (10807-10967) | |
| 484-646, gnl|mm7|chr12 (77108300-77108512) | |
| 484-646, gnl|mm7|chr12 (77108344-77108504) | |
| 484-646, gnl|Mm7|chr12 (77108343-77108505) | |
| 484-646, gnl|monDom2|scaffold_3 (49314194-49314354) | |
| 484-646, gnl|monDom2|scaffold_8 (83026862-83027046) | |
| 484-646, gnl|oryCun1|scaffold_211863 (32391-32600) | |
| 484-646, gnl|oryCun1|scaffold_211863 (32432-32592) | |
| 484-646, gnl|panTro1|chr15 (66802745-66802956) | |
| 484-646, gnl|panTro1|chr5_random (194000-194159) | |
| 484-646, gnl|rheMac2|chr4 (96094586-96094744) | |
| 484-646, gnl|rheMac2|chr7 (130760381-130760590) | |
| 484-646, gnl|rn3|chr6 (101925609-101925821) | |
| 484-646, gnl|rn3|chr6 (101925653-101925813) | |
| 484-646, gnl|tetNig1|chr10 (11573324-11573153) | |
| 484-646, gnl|tetNig1|chr10 (11573320-11573160) | |
| 484-646, gnl|xenTro1|scaffold_566 (461571-461354) | |
| 484-646, gnl|xenTro1|scaffold_566 (461522-461362) | |
| 742-846, gnl|bosTau2|chr9 (40017169-40017273) | |
| 742-846, gnl|Hg17|chr6 (131945893-131945997) | |
| 742-846, gnl|Mm7|chr10 (24669117-24669013) | |
| 982-1368, gnl|bosTau2|chr9 (40017869-40018254) | |
| 982-1368, gnl|Hg17|chr6 (131946573-131946947) | |
| 982-1368, gnl|Mm7|chr10 (24668439-24668062) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-238, gnl|bosTau2|chr9 (40002834-40003034) | |
| 33-238, gnl|Hg17|chr6 (131935979-131936172) | |
| 33-238, gnl|Mm7|chr10 (24680178-24679970) | |
| 484-646, gnl|bosTau2|chr10 (53636887-53637049) | |
| 484-646, gnl|canFam2|chr8 (44649552-44649762) | |
| 484-646, gnl|canFam2|chr8 (44649595-44649751) | |
| 484-646, gnl|danRer3|chr12 (8645053-8644893) | |
| 484-646, gnl|danRer3|chr13 (34696146-34695972) | |
| 484-646, gnl|dasNov1|scaffold_145978 (1891-1683) | |
| 484-646, gnl|dasNov1|scaffold_89837 (3815-3656) | |
| 484-646, gnl|echTel1|scaffold_308673 (64313-64101) | |
| 484-646, gnl|echTel1|scaffold_308673 (64269-64109) | |
| 484-646, gnl|fr1|chrUn (278839641-278839446) | |
| 484-646, gnl|fr1|chrUn (278839614-278839454) | |
| 484-646, gnl|galGal2|chr5 (25781593-25781798) | |
| 484-646, gnl|hg17|chr14 (67182070-67182279) | |
| 484-646, gnl|Hg17|chr14 (67182110-67182272) | |
| 484-646, gnl|hg17|chr6 (100732096-100732255) | |
| 484-646, gnl|loxAfr1|scaffold_24121 (10765-10975) | |
| 484-646, gnl|loxAfr1|scaffold_24121 (10807-10967) | |
| 484-646, gnl|mm7|chr12 (77108300-77108512) | |
| 484-646, gnl|mm7|chr12 (77108344-77108504) | |
| 484-646, gnl|Mm7|chr12 (77108343-77108505) | |
| 484-646, gnl|monDom2|scaffold_3 (49314194-49314354) | |
| 484-646, gnl|monDom2|scaffold_8 (83026862-83027046) | |
| 484-646, gnl|oryCun1|scaffold_211863 (32391-32600) | |
| 484-646, gnl|oryCun1|scaffold_211863 (32432-32592) | |
| 484-646, gnl|panTro1|chr15 (66802745-66802956) | |
| 484-646, gnl|panTro1|chr5_random (194000-194159) | |
| 484-646, gnl|rheMac2|chr4 (96094586-96094744) | |
| 484-646, gnl|rheMac2|chr7 (130760381-130760590) | |
| 484-646, gnl|rn3|chr6 (101925609-101925821) | |
| 484-646, gnl|rn3|chr6 (101925653-101925813) | |
| 484-646, gnl|tetNig1|chr10 (11573324-11573153) | |
| 484-646, gnl|tetNig1|chr10 (11573320-11573160) | |
| 484-646, gnl|xenTro1|scaffold_566 (461571-461354) | |
| 484-646, gnl|xenTro1|scaffold_566 (461522-461362) | |
| 742-846, gnl|bosTau2|chr9 (40017169-40017273) | |
| 742-846, gnl|Hg17|chr6 (131945893-131945997) | |
| 742-846, gnl|Mm7|chr10 (24669117-24669013) | |
| 982-1368, gnl|bosTau2|chr9 (40017869-40018254) | |
| 982-1368, gnl|Hg17|chr6 (131946573-131946947) | |
| 982-1368, gnl|Mm7|chr10 (24668439-24668062) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| lun (4.51467) | |
| cbl (0.688784) | |
| eli (0.303628) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| liv (0.146284) | |
| nca (0.136874) | |
| clu (0.119646) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (4.51467) | |
| cbl (0.688784) | |
| eli (0.303628) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| liv (0.146284) | |
| nca (0.136874) | |
| clu (0.119646) |