Non-Coding RNA Search

Ss1.1-Pig4-TMW8027A17.3

Sequence:


               
               GAGCGGCGGTGCTACAGATCCAGGCTGCGCCGGTGGTGGCTGCACGGGCAGAGGCTGCAG
GGCGGACGCACGGCCGGGCGCAGCCATGGTGAAGATCAGCTTCCAGCCGGCGGTGGCCGG
CATCAAGGGCGACAAGGCCGACAAGGCTTCGGCCTCGGCCTCCGCCCCGGCGCCCGCCCC
GGCCGCTGAGATCCTGCTGACGCCGGCTCGGGAGGAGCGGCCCCCCCACCACCGCTACAA
GAAGGGGAGCTCTGTGGGCGGCGTGTGCTACCTGTCGATGGGCATGGTCGTGCTGCTTAT
GGGCCTCGTGTTCGCCTCCGTCTACATCTACAGATACTTCTTCCTCGCTCAGCTGGCCCG
CGACAACTTCTTCCACTGCGGCGTCCTCTACGAGGACTCCCTGTCCTCCCAGGCCCGCAC
GCGCATGGAGCTGGAGGAGGACGTGAAGATCTACCTGGAGGAGAACTACGAGCGCATCAA
CGTGCCCGTGCCCCAGTTCGGCGGCGGCGACCCTGCCGACATCATCCACGACTTCCAGCG
GGGTCTCACCGCCTATCATGACATCTCCTTGGACAAGTGCTATGTCATCGAGCTTAACAC
CACCATCGTGCTGCCCCCTCGCAACTTCTGGGAGCTCCTTATGAACGTGAAGAGGGGGAC
CTACCTCCCGCAGACCTACATCATCCAGGAGGAGATGGTGGTCACGGAGCACGTCAGCGA
CAAGGAGGCCCTGGGCTCCTTCATCTACCACCTGTGCAACGGGAAGGACACCTACCGGCT
GCGGCGCAGGGCCACCCGGAGACGGATCAACAAACGAGGGGCCAAGAACTGCAACGCCAT
CCGCCACTTCGAGAACACCTTCGTGGTGGAGACGCTCATCTGCGGGGTGGTGTGAAGCCC
CGCCCCTCGCCCCAGGCCCCGCCCCCGCCCTCTTTCTTTCGCTCTTCCGGCCACGGGCTG
GCCCTCCTTCCCCGCGCTTAGCTTGTACTTTGGACGCCTTTCTGTAGATGTGATGTGTCT
CCCCGTGTCTCCCCAGCCCTGCCCGTTTCCCTGTACCAGAGCTGTGACCTCTCAGGGCCT
CCGCCCCTGCTGACCTTCCCGATCTGGGGGATGGAGGGGGCGCCCCAAGGTGGTTTCTGT
CACCACCATCTTGAGGTCAGGTCCATGGGGGCCTGGCCCACCGCTGCACCAGCAGCCCAA
AGGCAAGGACTGGTCGGAAGGGCCAGGCAGGTTGGGGTTCCGGCAAGGGATCAGGTGGGG
AGCTGGGTGTGGAGCGGGGGCGGGGGAGGGGGTTCCGGAATGTCTGCACAGCTGGGAAAG
CCCCCCCAAAAGGCTTTGCCTTGCACAGCACGCTTCCTCCCCCGTCCCAGTTCCCGGACC
TGAGCTGAGGATGGAGGGGCCGTGCCGAGGGACAGACCCACCCAGAGCACATGGGAAGGT
GACTGTCCTGGCGTGGAGGGGGGGTCTCCCCAGGACTCCTGTCAGTGCCTTCAGCCCACC
AGCGGAAGCCTGGAGCTTGGGGAGTGGGATGAGTCCGTCAAGCACAATTGTTCTCCGGGT
GGAACCAAAGAAAGGAGGAGCCAGGGACCCCATTCCTGGCCCCCCAGGAGCACAAGCAGG
GTCCCCGCGGCCACAGCCACAGACCCGGGCAGGGGGCGGGGTCGCTTTTCACCCCGCCCG
CCGGGCAGCCCTGCTGGACGGAGCTGGGATGCGCTGCGGGTCCTGCTGAGTGGGTGGGGC
TCGCTGCTGCCTTCTCCGGCTTAGGGCTGTTTTGGAAGGCACCTGGGGGAAGGGAAGGGA
GGGCCACCTGGTACGTATACCCCCTGCCTCCTCTTTGTTTCAAATTCCATCCCCCTGTGC
TTTGGGGGAACGCAGCGTTTCTTTCCTTTTCCTTCTCACTTTTGCATGTTTTTACTGACC
ATTCGATATGCTAACCGTTCTGAGCCCTGAAGAGAGGGCTTCGACGCCTCCAGTCAGACT
TAGGTGCTCTCTGGAGATGAAACTCTTAATTAAATGCTTTGTATATTTTCTCAATTAGAT
CTCTTTTCAGGAGTGTCTGTAGAACAATAAAAATCTTTGACTTCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCGGTGCTACAGATCCAGGCTGCGCCGGTGGTGGCTGCACGGGCAGAGGCTGCAG
GGCGGACGCACGGCCGGGCGCAGCCATGGTGAAGATCAGCTTCCAGCCGGCGGTGGCCGG
CATCAAGGGCGACAAGGCCGACAAGGCTTCGGCCTCGGCCTCCGCCCCGGCGCCCGCCCC
GGCCGCTGAGATCCTGCTGACGCCGGCTCGGGAGGAGCGGCCCCCCCACCACCGCTACAA
GAAGGGGAGCTCTGTGGGCGGCGTGTGCTACCTGTCGATGGGCATGGTCGTGCTGCTTAT
GGGCCTCGTGTTCGCCTCCGTCTACATCTACAGATACTTCTTCCTCGCTCAGCTGGCCCG
CGACAACTTCTTCCACTGCGGCGTCCTCTACGAGGACTCCCTGTCCTCCCAGGCCCGCAC
GCGCATGGAGCTGGAGGAGGACGTGAAGATCTACCTGGAGGAGAACTACGAGCGCATCAA
CGTGCCCGTGCCCCAGTTCGGCGGCGGCGACCCTGCCGACATCATCCACGACTTCCAGCG
GGGTCTCACCGCCTATCATGACATCTCCTTGGACAAGTGCTATGTCATCGAGCTTAACAC
CACCATCGTGCTGCCCCCTCGCAACTTCTGGGAGCTCCTTATGAACGTGAAGAGGGGGAC
CTACCTCCCGCAGACCTACATCATCCAGGAGGAGATGGTGGTCACGGAGCACGTCAGCGA
CAAGGAGGCCCTGGGCTCCTTCATCTACCACCTGTGCAACGGGAAGGACACCTACCGGCT
GCGGCGCAGGGCCACCCGGAGACGGATCAACAAACGAGGGGCCAAGAACTGCAACGCCAT
CCGCCACTTCGAGAACACCTTCGTGGTGGAGACGCTCATCTGCGGGGTGGTGTGAAGCCC
CGCCCCTCGCCCCAGGCCCCGCCCCCGCCCTCTTTCTTTCGCTCTTCCGGCCACGGGCTG
GCCCTCCTTCCCCGCGCTTAGCTTGTACTTTGGACGCCTTTCTGTAGATGTGATGTGTCT
CCCCGTGTCTCCCCAGCCCTGCCCGTTTCCCTGTACCAGAGCTGTGACCTCTCAGGGCCT
CCGCCCCTGCTGACCTTCCCGATCTGGGGGATGGAGGGGGCGCCCCAAGGTGGTTTCTGT
CACCACCATCTTGAGGTCAGGTCCATGGGGGCCTGGCCCACCGCTGCACCAGCAGCCCAA
AGGCAAGGACTGGTCGGAAGGGCCAGGCAGGTTGGGGTTCCGGCAAGGGATCAGGTGGGG
AGCTGGGTGTGGAGCGGGGGCGGGGGAGGGGGTTCCGGAATGTCTGCACAGCTGGGAAAG
CCCCCCCAAAAGGCTTTGCCTTGCACAGCACGCTTCCTCCCCCGTCCCAGTTCCCGGACC
TGAGCTGAGGATGGAGGGGCCGTGCCGAGGGACAGACCCACCCAGAGCACATGGGAAGGT
GACTGTCCTGGCGTGGAGGGGGGGTCTCCCCAGGACTCCTGTCAGTGCCTTCAGCCCACC
AGCGGAAGCCTGGAGCTTGGGGAGTGGGATGAGTCCGTCAAGCACAATTGTTCTCCGGGT
GGAACCAAAGAAAGGAGGAGCCAGGGACCCCATTCCTGGCCCCCCAGGAGCACAAGCAGG
GTCCCCGCGGCCACAGCCACAGACCCGGGCAGGGGGCGGGGTCGCTTTTCACCCCGCCCG
CCGGGCAGCCCTGCTGGACGGAGCTGGGATGCGCTGCGGGTCCTGCTGAGTGGGTGGGGC
TCGCTGCTGCCTTCTCCGGCTTAGGGCTGTTTTGGAAGGCACCTGGGGGAAGGGAAGGGA
GGGCCACCTGGTACGTATACCCCCTGCCTCCTCTTTGTTTCAAATTCCATCCCCCTGTGC
TTTGGGGGAACGCAGCGTTTCTTTCCTTTTCCTTCTCACTTTTGCATGTTTTTACTGACC
ATTCGATATGCTAACCGTTCTGAGCCCTGAAGAGAGGGCTTCGACGCCTCCAGTCAGACT
TAGGTGCTCTCTGGAGATGAAACTCTTAATTAAATGCTTTGTATATTTTCTCAATTAGAT
CTCTTTTCAGGAGTGTCTGTAGAACAATAAAAATCTTTGACTTCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               ITM2C_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ITM2C_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               86-1902, - strand, RNAz p=0.999494
               

               
               798-916, - strand, RNAz p=0.592148

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-1902, - strand, RNAz p=0.999494
               

               
               798-916, - strand, RNAz p=0.592148

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               6-1175, gnl|bosTau2|chr16 (4022079-4020943)
               


               
               1262-2112, gnl|bosTau2|chr16 (4020898-4020064)
               

               
               1262-2112, gnl|Hg17|chr2 (231568670-231569467)
               

               
               1262-2112, gnl|Mm7|chr1 (85808675-85809413)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1175, gnl|bosTau2|chr16 (4022079-4020943)
               


               
               1262-2112, gnl|bosTau2|chr16 (4020898-4020064)
               

               
               1262-2112, gnl|Hg17|chr2 (231568670-231569467)
               

               
               1262-2112, gnl|Mm7|chr1 (85808675-85809413)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               fcc (1.18671)
               

               
               cag (1.05836)
               

               
               nje (0.99552)
               

               
               eep (0.857948)
               

               
               nco (0.808669)
               

               
               ute (0.796707)
               

               
               jej (0.593531)
               

               
               ebs (0.591506)
               

               
               hyp (0.571347)
               

               
               duo (0.518403)
               

               
               eru (0.480192)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.18671)
               

               
               cag (1.05836)
               

               
               nje (0.99552)
               

               
               eep (0.857948)
               

               
               nco (0.808669)
               

               
               ute (0.796707)
               

               
               jej (0.593531)
               

               
               ebs (0.591506)
               

               
               hyp (0.571347)
               

               
               duo (0.518403)
               

               
               eru (0.480192)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	86-1902, - strand, RNAz p=0.999494
	798-916, - strand, RNAz p=0.592148

	6-1175, gnl\|bosTau2\|chr16 (4022079-4020943)

	1262-2112, gnl\|bosTau2\|chr16 (4020898-4020064)
	1262-2112, gnl\|Hg17\|chr2 (231568670-231569467)
	1262-2112, gnl\|Mm7\|chr1 (85808675-85809413)

	fcc (1.18671)
	cag (1.05836)
	nje (0.99552)
	eep (0.857948)
	nco (0.808669)
	ute (0.796707)
	jej (0.593531)
	ebs (0.591506)
	hyp (0.571347)
	duo (0.518403)
	eru (0.480192)
	pla (0.401016)
	elu (0.385356)
	ill (0.351185)
	fbs (0.350693)
	fhi (0.339155)
	lnt (0.284616)
	fce (0.271592)
	cov (0.264306)
	ese (0.253004)
	cly (0.241284)
	jca (0.22792)
	nms (0.213858)
	cty (0.20816)
	col (0.195008)
	nlu (0.191681)
	ton (0.1755)
	csp (0.161186)
	cli (0.152812)
	pty (0.142714)
	che (0.136314)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)