Non-Coding RNA Search

Ss1.1-Pig4-TMW8027A20.3

Sequence:


               
               CCGAACCAGACTTTGCAACAGGTGACGATTCTGAGGATGATTCTGATTTTTGTGAGAGTG
AGGATGATGAAGCCCTCACTGTGAGAAAAAGCAAAGTTAAAGAAATCAAAAAGCAAAAAG
TGAAGGTGAAATCTCCAGTTGAAAAGAAAGAGAAGAAACCTAAATCTAGACGTGCTGCTG
TGGTGACTTCAGTACACTCTGCTCCATCTGCCGTCAAGTCAGAATCTCAGCCCTTGCCAA
AAAAGGTTTCTGTTTCTTCAGAGGCCACTGAGAAGCCATTACAAATATGCAGTCCTTCGG
CTGAAAGCAGGAGACCTAAGTGGGTCCCACCAGCAGCATCGGGAAGTGGCAGCAGTAGCC
GCCCGCTGGCAGGAGTGGCTGTGAAGTCTCCAAGTCAGAGCCTCCGCCTTGGCTTGTCCA
GATTAGCACGAGTTAAACCTTTGCATCCCAGCGCCGCTAGTAGTTGTGTGTAGCAGCAAG
GCAATGTTTGATTAAGAGGATCTTTGTTTTATAAGCCTGTTTATATTTGAGGAGGGTATT
GTAATATAAAAGAATCCTTTGTCGTATAAATTATCTCTACCCATTTTGTGATTACATTCT
CTGAAAAGCTGTTTCAGATTCACTTATGAAGTTTGCTGTTTCCTTCTGAAGAGCCTTATC
TCTCCTTTCTGTGTATATAAGTCATTGTCGTACGTGGCTGTCAGTTTGACATGGAGGATG
TCCACATCACACGCTGCTCTTTTCTCGTGACACGGTGCTTTTTCCTGACTTTGTCTAGTT
TATAGCACCTGAACTTTGTTCCGAGTTTATCCCATTTCTCCCAGGAGACATTTCTGAAAT
CTTAGAAGTTACTTAAGCTACATTGTTAGTTTCATTGTAATGATGTTTCGTATTTTAGCC
AAATCTTTGTATATTAAGAATTCAGAATTATTTTCCACTTTCAAACACTTCCCGTACCAG
CGTGTGTCTCCTACTTAAAAGTAGATGGCTATTGTATAGCAAATAGAATTTTGTGATGTT
TTATGAAGCCTGCATTGTCAAAACCTTTAATAAAAGTGAGAAAGTTTTAAAAAAAAAAAA
TCCTTGACACCTATGCATCTATCTGTCTCTAATTGTCTCCATTTCATGATAAAATGAGTG
CTCTGCCAAAAAAAAAAAAAAGACTTGCCTTTTTGTTGTAAACGCCAAGGGGAAGAGCCG
TTTCTTAATCACTTTATGTTGGGCCTGTGCTTTCCCGCGTGGCTGTTAAGTACTCGGTCA
TCCCTGTTGTGTTATATAATACAGCTCTTCGGGAAGCTTGGATCTGTGCTCTCTGTGAAT
AAAAAGAGTGATAGATATTTTATATTTATGGTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAACCAGACTTTGCAACAGGTGACGATTCTGAGGATGATTCTGATTTTTGTGAGAGTG
AGGATGATGAAGCCCTCACTGTGAGAAAAAGCAAAGTTAAAGAAATCAAAAAGCAAAAAG
TGAAGGTGAAATCTCCAGTTGAAAAGAAAGAGAAGAAACCTAAATCTAGACGTGCTGCTG
TGGTGACTTCAGTACACTCTGCTCCATCTGCCGTCAAGTCAGAATCTCAGCCCTTGCCAA
AAAAGGTTTCTGTTTCTTCAGAGGCCACTGAGAAGCCATTACAAATATGCAGTCCTTCGG
CTGAAAGCAGGAGACCTAAGTGGGTCCCACCAGCAGCATCGGGAAGTGGCAGCAGTAGCC
GCCCGCTGGCAGGAGTGGCTGTGAAGTCTCCAAGTCAGAGCCTCCGCCTTGGCTTGTCCA
GATTAGCACGAGTTAAACCTTTGCATCCCAGCGCCGCTAGTAGTTGTGTGTAGCAGCAAG
GCAATGTTTGATTAAGAGGATCTTTGTTTTATAAGCCTGTTTATATTTGAGGAGGGTATT
GTAATATAAAAGAATCCTTTGTCGTATAAATTATCTCTACCCATTTTGTGATTACATTCT
CTGAAAAGCTGTTTCAGATTCACTTATGAAGTTTGCTGTTTCCTTCTGAAGAGCCTTATC
TCTCCTTTCTGTGTATATAAGTCATTGTCGTACGTGGCTGTCAGTTTGACATGGAGGATG
TCCACATCACACGCTGCTCTTTTCTCGTGACACGGTGCTTTTTCCTGACTTTGTCTAGTT
TATAGCACCTGAACTTTGTTCCGAGTTTATCCCATTTCTCCCAGGAGACATTTCTGAAAT
CTTAGAAGTTACTTAAGCTACATTGTTAGTTTCATTGTAATGATGTTTCGTATTTTAGCC
AAATCTTTGTATATTAAGAATTCAGAATTATTTTCCACTTTCAAACACTTCCCGTACCAG
CGTGTGTCTCCTACTTAAAAGTAGATGGCTATTGTATAGCAAATAGAATTTTGTGATGTT
TTATGAAGCCTGCATTGTCAAAACCTTTAATAAAAGTGAGAAAGTTTTAAAAAAAAAAAA
TCCTTGACACCTATGCATCTATCTGTCTCTAATTGTCTCCATTTCATGATAAAATGAGTG
CTCTGCCAAAAAAAAAAAAAAGACTTGCCTTTTTGTTGTAAACGCCAAGGGGAAGAGCCG
TTTCTTAATCACTTTATGTTGGGCCTGTGCTTTCCCGCGTGGCTGTTAAGTACTCGGTCA
TCCCTGTTGTGTTATATAATACAGCTCTTCGGGAAGCTTGGATCTGTGCTCTCTGTGAAT
AAAAAGAGTGATAGATATTTTATATTTATGGTGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7Z779_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z779_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               58-174, - strand, RNAz p=0.896157

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-174, - strand, RNAz p=0.896157

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               19-179, gnl|bosTau2|chr5 (63637636-63637793)
               

               
               19-179, gnl|canFam2|chr27 (43340594-43340751)
               

               
               19-179, gnl|dasNov1|scaffold_47500 (7028-7170)
               

               
               19-179, gnl|echTel1|scaffold_317397 (6993-7151)
               

               
               19-179, gnl|Hg17|chr12 (4532407-4532570)
               

               
               19-179, gnl|hg17|chr3 (138100891-138101060)
               

               
               19-179, gnl|loxAfr1|scaffold_137188 (592-750)
               

               
               19-179, gnl|mm7|chr6 (126951735-126951887)
               

               
               19-179, gnl|Mm7|chr6 (126951893-126951736)
               

               
               19-179, gnl|monDom2|scaffold_98 (3548980-3549146)
               

               
               19-179, gnl|oryCun1|scaffold_158559 (1490-1647)
               

               
               19-179, gnl|panTro1|chr2 (140373933-140374110)
               

               
               19-179, gnl|rheMac2|chr2 (150905812-150905638)
               

               
               19-179, gnl|rn3|chr4 (163556819-163556965)
               


               
               349-1354, gnl|bosTau2|chr5 (63642657-63643666)
               

               
               349-1354, gnl|Hg17|chr12 (4538296-4539313)
               

               
               349-1354, gnl|Mm7|chr6 (126949701-126948840)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-179, gnl|bosTau2|chr5 (63637636-63637793)
               

               
               19-179, gnl|canFam2|chr27 (43340594-43340751)
               

               
               19-179, gnl|dasNov1|scaffold_47500 (7028-7170)
               

               
               19-179, gnl|echTel1|scaffold_317397 (6993-7151)
               

               
               19-179, gnl|Hg17|chr12 (4532407-4532570)
               

               
               19-179, gnl|hg17|chr3 (138100891-138101060)
               

               
               19-179, gnl|loxAfr1|scaffold_137188 (592-750)
               

               
               19-179, gnl|mm7|chr6 (126951735-126951887)
               

               
               19-179, gnl|Mm7|chr6 (126951893-126951736)
               

               
               19-179, gnl|monDom2|scaffold_98 (3548980-3549146)
               

               
               19-179, gnl|oryCun1|scaffold_158559 (1490-1647)
               

               
               19-179, gnl|panTro1|chr2 (140373933-140374110)
               

               
               19-179, gnl|rheMac2|chr2 (150905812-150905638)
               

               
               19-179, gnl|rn3|chr4 (163556819-163556965)
               


               
               349-1354, gnl|bosTau2|chr5 (63642657-63643666)
               

               
               349-1354, gnl|Hg17|chr12 (4538296-4539313)
               

               
               349-1354, gnl|Mm7|chr6 (126949701-126948840)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               cbl (0.344392)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	19-179, gnl\|bosTau2\|chr5 (63637636-63637793)
	19-179, gnl\|canFam2\|chr27 (43340594-43340751)
	19-179, gnl\|dasNov1\|scaffold_47500 (7028-7170)
	19-179, gnl\|echTel1\|scaffold_317397 (6993-7151)
	19-179, gnl\|Hg17\|chr12 (4532407-4532570)
	19-179, gnl\|hg17\|chr3 (138100891-138101060)
	19-179, gnl\|loxAfr1\|scaffold_137188 (592-750)
	19-179, gnl\|mm7\|chr6 (126951735-126951887)
	19-179, gnl\|Mm7\|chr6 (126951893-126951736)
	19-179, gnl\|monDom2\|scaffold_98 (3548980-3549146)
	19-179, gnl\|oryCun1\|scaffold_158559 (1490-1647)
	19-179, gnl\|panTro1\|chr2 (140373933-140374110)
	19-179, gnl\|rheMac2\|chr2 (150905812-150905638)
	19-179, gnl\|rn3\|chr4 (163556819-163556965)

	349-1354, gnl\|bosTau2\|chr5 (63642657-63643666)
	349-1354, gnl\|Hg17\|chr12 (4538296-4539313)
	349-1354, gnl\|Mm7\|chr6 (126949701-126948840)

	cbl (0.344392)
	liv (0.292569)
	fce (0.271592)
	thg (0.253582)
	aor (0.195274)
	ill (0.175593)
	lin (0.145603)
	sug (0.127291)
	clu (0.119646)
	spc (0.113366)