Ss1.1-Pig4-TMW8027B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTATTGGGTCACAGATGTGGCTCTTCATCAGGTGTTCAAATTAGATCCAGACAGTAAAG AAGCCCCTCTGTTAATCCTGGGACAGAGCATGCAACCAGGCAGTGACCAGAATCACTTCT GTCAACCCACTGACGTGGCTGTGGATCCAGACACTGGAACCATCTATGTATCAGATGGTT ACTGCAATAGTCGGATTGTGCAGTTTTCACCAAGTGGAAAGTACATCACACAGTGGGGAG AAGAGTCTACTGGGGACAGCCCTAAACCAGGCCAGTTCAGTGTTCCTCACAGTTTGGCCC TTGTGCCTCATTTGGGCCAATTATGTGTGGCAGACAGGGAAAACGGTCGGATCCAGTGTT TTAAAACTGACACCAAAGAATTTGTGCGAGAGATTAAGCATGCATTGTTCGGAAGAAATG TATTTGCAATTTCATATGTATCAGGTTTGCTCTTTGCTGTGAACGGAAAGCCTTACTTTG AGGACCAAGAACCTGTACAAGGATTTGTGATGAACTTTTCCAATGGGGAAATTATAGACG TCTTCAAGCCAGTGCGCAAGCACTTTGACATGCCTCATGACATCACTGCGTCTGAAGATG GGACCGTGTTTGTTGGAGACGCTCACACCAACACCGTGTGGAAGTTCACCTTGACTGAGA AAATGGAACATCGATCAGTTAAAAAGGCTGGCATTGAGGTCCAGGAAATCAAAGAATCCG AGGCAGTTGTTGAAACCAAAATGGAGAACAAACCCACCTCCTCAGAATTGCAGAAGATGC AAGAGAAACAGAAACTGATCAAAGAGCCAGGCTCAGGAGTGCCCGTTGTTCTCATTACAA CCCTGCTGGTTATTCCGGTGGTTGTCCTGCTGGCCATTGCCTTATTTATTCGGTGGAAAA AATCAAGGGCCTTTGGAGGAAAGGGGAGCGGAGGCTTGAATCTCGGCAATTTCTTCGCAA GCCGGAAAGGCTATAGCCGGAAAGGGTTTGACCGCCTTAGCACCGAGGGAAGCGACCAGG AGAAAGACGAGGATGATGGGAGTGAATCCGAAGAGGAGTATTCCGCACCACTGCCCACAC CCGCACCTTCCTCCTGAGATCAAGGCTTTGACTTAGGTTGATGAGATTTACCAAGAATGC CAGATTCCTTTCCCTTTAGCACGTTTAGAGTTTTGTGTATTTAACTGTAAACTGTACTAG TCTGTGTGGGACTGTACACATTTTACTTCATTTTGGTTTAGTTGGCTTTGGTTTCTAGTT GAGGAGTTTCCTAAAAGTTCAGAACAGTGCCATTGTCTTTATAGGAACATAGGATAGAGA AGCAGTCCTCTTCTTCCATCACACTAGTAAGTTAATGATGGAAGGTTTGCTCATCTGCAT TTTTGAGACTTTTCTGTAGTTTGTAAATAACCCCATTCTCTGCTTGAACACAGTATTTTC CCAACAGCACTTCCATTGCCAATGTCTTTCTTTGGTGCCTTTCCTGTTCAGCATTCTCAG CCTGTGGCAGTAAAGAGAAACTTTGTGCTACATGACGACAAAGCTGCTAAATCTCCTTCT ATTTTTTTAAAATCACTAACATTATATTGCAATGAGGGAAAGAAAAAGAAAGTCTCTATT TAAATTTTTTTTTTAATTTTTCTTCTTCAGTTGATGTGTTTTGGGGATGTCTTATTTTTA GATGGTTACACTGTTAGATCACTATTTTCAGAATCTGAATGTAATTTGTGTAATAAAGTG TTTTCAGAGCATAAAAAAAAAAAATGTATTTTGCGATTTTTGCATATTTGCAGGGTTTTG TATACAACTTTTGTAATAATTACACAAACCACAGATATAGTGAAACCTATTCAATGTCTT CATCCAAAAGAAATGTATTGTATTAAAATTAAGAAGAGTATTTTATTATGTAGCTAATAT AAATTAAAAACCAGCCTAATAGTTTATATACATGTGTAAAACCAGGTTCTCTTTTAAAAT TCAAAGAGGGGTTTTGCCTGTATATCAATCAGAAGGTAAATACTTTAATAAAAGGTGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTATTGGGTCACAGATGTGGCTCTTCATCAGGTGTTCAAATTAGATCCAGACAGTAAAG AAGCCCCTCTGTTAATCCTGGGACAGAGCATGCAACCAGGCAGTGACCAGAATCACTTCT GTCAACCCACTGACGTGGCTGTGGATCCAGACACTGGAACCATCTATGTATCAGATGGTT ACTGCAATAGTCGGATTGTGCAGTTTTCACCAAGTGGAAAGTACATCACACAGTGGGGAG AAGAGTCTACTGGGGACAGCCCTAAACCAGGCCAGTTCAGTGTTCCTCACAGTTTGGCCC TTGTGCCTCATTTGGGCCAATTATGTGTGGCAGACAGGGAAAACGGTCGGATCCAGTGTT TTAAAACTGACACCAAAGAATTTGTGCGAGAGATTAAGCATGCATTGTTCGGAAGAAATG TATTTGCAATTTCATATGTATCAGGTTTGCTCTTTGCTGTGAACGGAAAGCCTTACTTTG AGGACCAAGAACCTGTACAAGGATTTGTGATGAACTTTTCCAATGGGGAAATTATAGACG TCTTCAAGCCAGTGCGCAAGCACTTTGACATGCCTCATGACATCACTGCGTCTGAAGATG GGACCGTGTTTGTTGGAGACGCTCACACCAACACCGTGTGGAAGTTCACCTTGACTGAGA AAATGGAACATCGATCAGTTAAAAAGGCTGGCATTGAGGTCCAGGAAATCAAAGAATCCG AGGCAGTTGTTGAAACCAAAATGGAGAACAAACCCACCTCCTCAGAATTGCAGAAGATGC AAGAGAAACAGAAACTGATCAAAGAGCCAGGCTCAGGAGTGCCCGTTGTTCTCATTACAA CCCTGCTGGTTATTCCGGTGGTTGTCCTGCTGGCCATTGCCTTATTTATTCGGTGGAAAA AATCAAGGGCCTTTGGAGGAAAGGGGAGCGGAGGCTTGAATCTCGGCAATTTCTTCGCAA GCCGGAAAGGCTATAGCCGGAAAGGGTTTGACCGCCTTAGCACCGAGGGAAGCGACCAGG AGAAAGACGAGGATGATGGGAGTGAATCCGAAGAGGAGTATTCCGCACCACTGCCCACAC CCGCACCTTCCTCCTGAGATCAAGGCTTTGACTTAGGTTGATGAGATTTACCAAGAATGC CAGATTCCTTTCCCTTTAGCACGTTTAGAGTTTTGTGTATTTAACTGTAAACTGTACTAG TCTGTGTGGGACTGTACACATTTTACTTCATTTTGGTTTAGTTGGCTTTGGTTTCTAGTT GAGGAGTTTCCTAAAAGTTCAGAACAGTGCCATTGTCTTTATAGGAACATAGGATAGAGA AGCAGTCCTCTTCTTCCATCACACTAGTAAGTTAATGATGGAAGGTTTGCTCATCTGCAT TTTTGAGACTTTTCTGTAGTTTGTAAATAACCCCATTCTCTGCTTGAACACAGTATTTTC CCAACAGCACTTCCATTGCCAATGTCTTTCTTTGGTGCCTTTCCTGTTCAGCATTCTCAG CCTGTGGCAGTAAAGAGAAACTTTGTGCTACATGACGACAAAGCTGCTAAATCTCCTTCT ATTTTTTTAAAATCACTAACATTATATTGCAATGAGGGAAAGAAAAAGAAAGTCTCTATT TAAATTTTTTTTTTAATTTTTCTTCTTCAGTTGATGTGTTTTGGGGATGTCTTATTTTTA GATGGTTACACTGTTAGATCACTATTTTCAGAATCTGAATGTAATTTGTGTAATAAAGTG TTTTCAGAGCATAAAAAAAAAAAATGTATTTTGCGATTTTTGCATATTTGCAGGGTTTTG TATACAACTTTTGTAATAATTACACAAACCACAGATATAGTGAAACCTATTCAATGTCTT CATCCAAAAGAAATGTATTGTATTAAAATTAAGAAGAGTATTTTATTATGTAGCTAATAT AAATTAAAAACCAGCCTAATAGTTTATATACATGTGTAAAACCAGGTTCTCTTTTAAAAT TCAAAGAGGGGTTTTGCCTGTATATCAATCAGAAGGTAAATACTTTAATAAAAGGTGATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 70-243, + strand, RNAz p=0.985242 | |
| 1302-1402, - strand, RNAz p=0.996587 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 70-243, + strand, RNAz p=0.985242 | |
| 1302-1402, - strand, RNAz p=0.996587 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 31-243, gnl|bosTau2|chr7 (64820733-64820945) | |
| 31-243, gnl|Hg17|chr5 (102370402-102370614) | |
| 31-243, gnl|Mm7|chr1 (97693107-97692895) | |
| 437-560, gnl|bosTau2|chr7 (64824137-64824260) | |
| 437-560, gnl|canFam2|chr3 (11040836-11040682) | |
| 437-560, gnl|dasNov1|scaffold_925 (277-123) | |
| 437-560, gnl|echTel1|scaffold_323594 (99893-100047) | |
| 437-560, gnl|fr1|chrUn (255521403-255521555) | |
| 437-560, gnl|galGal2|chrZ (22412740-22412891) | |
| 437-560, gnl|hg17|chr5 (102373342-102373496) | |
| 437-560, gnl|Hg17|chr5 (102373346-102373469) | |
| 437-560, gnl|loxAfr1|scaffold_4107 (78227-78073) | |
| 437-560, gnl|mm7|chr1 (97690290-97690136) | |
| 437-560, gnl|Mm7|chr1 (97690282-97690159) | |
| 437-560, gnl|monDom2|scaffold_27 (5002162-5002317) | |
| 437-560, gnl|oryCun1|scaffold_210494 (6892-7045) | |
| 437-560, gnl|panTro1|chr4 (108212164-108212318) | |
| 437-560, gnl|rheMac2|chr6 (99260114-99260268) | |
| 437-560, gnl|rn3|chr9 (97237185-97237337) | |
| 437-560, gnl|xenTro1|scaffold_45 (85694-85536) | |
| 917-2039, gnl|bosTau2|chr7 (64847057-64848166) | |
| 917-2039, gnl|Hg17|chr5 (102392488-102393594) | |
| 917-2039, gnl|Mm7|chr1 (97674186-97673025) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-243, gnl|bosTau2|chr7 (64820733-64820945) | |
| 31-243, gnl|Hg17|chr5 (102370402-102370614) | |
| 31-243, gnl|Mm7|chr1 (97693107-97692895) | |
| 437-560, gnl|bosTau2|chr7 (64824137-64824260) | |
| 437-560, gnl|canFam2|chr3 (11040836-11040682) | |
| 437-560, gnl|dasNov1|scaffold_925 (277-123) | |
| 437-560, gnl|echTel1|scaffold_323594 (99893-100047) | |
| 437-560, gnl|fr1|chrUn (255521403-255521555) | |
| 437-560, gnl|galGal2|chrZ (22412740-22412891) | |
| 437-560, gnl|hg17|chr5 (102373342-102373496) | |
| 437-560, gnl|Hg17|chr5 (102373346-102373469) | |
| 437-560, gnl|loxAfr1|scaffold_4107 (78227-78073) | |
| 437-560, gnl|mm7|chr1 (97690290-97690136) | |
| 437-560, gnl|Mm7|chr1 (97690282-97690159) | |
| 437-560, gnl|monDom2|scaffold_27 (5002162-5002317) | |
| 437-560, gnl|oryCun1|scaffold_210494 (6892-7045) | |
| 437-560, gnl|panTro1|chr4 (108212164-108212318) | |
| 437-560, gnl|rheMac2|chr6 (99260114-99260268) | |
| 437-560, gnl|rn3|chr9 (97237185-97237337) | |
| 437-560, gnl|xenTro1|scaffold_45 (85694-85536) | |
| 917-2039, gnl|bosTau2|chr7 (64847057-64848166) | |
| 917-2039, gnl|Hg17|chr5 (102392488-102393594) | |
| 917-2039, gnl|Mm7|chr1 (97674186-97673025) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| hea (1.63599) | |
| sug (1.27291) | |
| gul (1.24312) | |
| ski (1.02715) | |
| bla (0.994777) | |
| fat (0.884564) | |
| nca (0.684369) | |
| vin (0.665115) | |
| fco (0.628832) | |
| kid (0.518941) | |
| ova (0.516529) | |
| pro (0.512033) | |
| tra (0.492368) | |
| mga (0.480615) | |
| jca (0.45584) | |
| csk (0.422238) | |
| che (0.408942) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| lun (0.300978) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| med (0.232504) | |
| spc (0.226732) | |
| nms (0.213858) | |
| cty (0.20816) | |
| tes (0.207814) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (1.63599) | |
| sug (1.27291) | |
| gul (1.24312) | |
| ski (1.02715) | |
| bla (0.994777) | |
| fat (0.884564) | |
| nca (0.684369) | |
| vin (0.665115) | |
| fco (0.628832) | |
| kid (0.518941) | |
| ova (0.516529) | |
| pro (0.512033) | |
| tra (0.492368) | |
| mga (0.480615) | |
| jca (0.45584) | |
| csk (0.422238) | |
| che (0.408942) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| lun (0.300978) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| med (0.232504) | |
| spc (0.226732) | |
| nms (0.213858) | |
| cty (0.20816) | |
| tes (0.207814) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |