Non-Coding RNA Search

Ss1.1-Pig4-TMW8027B16.5

Sequence:


               
               CTATGCTCTGGTGAGCGCAGTGGCAACTCTACCCAAGCAGGTAGCAGACCACTATGATAA
TTTTCAGATCTATAAAGCTTTGGAGGCCGTATCCAGCTGTGTCCGGCAAACAAATGGCTT
TGTACAAAGGCATGCACCGTGGAAGTTGAACTGGGAAAGCCCAATAGATGCTCCCTGGCT
GGGTACTGTGCTTCATGTAGCCTTGGAATGTTTGCGAGTGTTTGGAACTTTGCTCCAGCC
TGTCACCCCAAGACTGGCTGACAAGCTGCTGTCTAGGTTGGGGGTCTCTGCCACAGAGAG
GGGCCTTAGAGAGCTCTATTTCTTGCCTCGATTTTATGGACATCCATGCCCTTTTGAAGG
GAGGAGGCTGGGACCTGAAACTGGTGTGTTGTTTTCAAGACTGGACCAGTCAAGGGCCAG
GCTGGTAAATGCCCATAAGACCTAGAGACCCACTTCTTATTAGCTTGTGGTAGAAAAGCA
AATGTGTTATTTTCTTAATTTTCATTTTCAGGGAAATTACACTAATGCTTTCTAAAGTGG
TGCATCAAATGAGCACATAAGCAGTGTCCCTGTGAAAAGAGGCTTGTAGCCTTTCAGGAG
CCAGCTCCCTACTCCTCAGTTCTCTGTGTCCATTAACCACTGTCCTTTGCATCCCAGTGT
CCTTAAGATGTCTCAAGGGGAAATATGGGTAAGAGACAACTTTGTTGATACTGTTCCTTC
TCATTGTGCCTCCTTCCAAACACAGTTATGTTATTTGCCCAGACTACCTCTTATGGCTTG
TTTTTCATTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGCTCTGGTGAGCGCAGTGGCAACTCTACCCAAGCAGGTAGCAGACCACTATGATAA
TTTTCAGATCTATAAAGCTTTGGAGGCCGTATCCAGCTGTGTCCGGCAAACAAATGGCTT
TGTACAAAGGCATGCACCGTGGAAGTTGAACTGGGAAAGCCCAATAGATGCTCCCTGGCT
GGGTACTGTGCTTCATGTAGCCTTGGAATGTTTGCGAGTGTTTGGAACTTTGCTCCAGCC
TGTCACCCCAAGACTGGCTGACAAGCTGCTGTCTAGGTTGGGGGTCTCTGCCACAGAGAG
GGGCCTTAGAGAGCTCTATTTCTTGCCTCGATTTTATGGACATCCATGCCCTTTTGAAGG
GAGGAGGCTGGGACCTGAAACTGGTGTGTTGTTTTCAAGACTGGACCAGTCAAGGGCCAG
GCTGGTAAATGCCCATAAGACCTAGAGACCCACTTCTTATTAGCTTGTGGTAGAAAAGCA
AATGTGTTATTTTCTTAATTTTCATTTTCAGGGAAATTACACTAATGCTTTCTAAAGTGG
TGCATCAAATGAGCACATAAGCAGTGTCCCTGTGAAAAGAGGCTTGTAGCCTTTCAGGAG
CCAGCTCCCTACTCCTCAGTTCTCTGTGTCCATTAACCACTGTCCTTTGCATCCCAGTGT
CCTTAAGATGTCTCAAGGGGAAATATGGGTAAGAGACAACTTTGTTGATACTGTTCCTTC
TCATTGTGCCTCCTTCCAAACACAGTTATGTTATTTGCCCAGACTACCTCTTATGGCTTG
TTTTTCATTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55614456|ref|XP_516010.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55614456|ref|XP_516010.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.709426
               

               
               280-479, + strand, RNAz p=0.981204

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.709426
               

               
               280-479, + strand, RNAz p=0.981204

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC040934, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC040934, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr2 (52134181-52134962)
               

               
               1-792, gnl|Hg17|chr2 (198396973-198397753)
               

               
               1-792, gnl|Mm7|chr1 (55485866-55486604)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr2 (52134181-52134962)
               

               
               1-792, gnl|Hg17|chr2 (198396973-198397753)
               

               
               1-792, gnl|Mm7|chr1 (55485866-55486604)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

	80-199, - strand, RNAz p=0.709426
	280-479, + strand, RNAz p=0.981204

	1-792, gnl\|bosTau2\|chr2 (52134181-52134962)
	1-792, gnl\|Hg17\|chr2 (198396973-198397753)
	1-792, gnl\|Mm7\|chr1 (55485866-55486604)