Non-Coding RNA Search

Ss1.1-Pig4-TMW8027B20.5

Sequence:


               
               TGGTAGAGTTCTCAGCCTTCGTGGAACCACCGGATGCAGCTGACTCTTACCAGCGGCACC
TGTTCGTACACATCAGCCAGCACTGCCCCAGCCCTGGAGCGCCCCCCCTTGAGAGTGTGG
ATGTCCGGCAGATCTATGACAAATTCCCTGAGAAAAAGGGCGGGCTGCGGGAGCTGTATG
ATCGTGGGCCCCCCCACGCCTTCTTCCTGGTCAAGTTCTGGGCGGACCTGAACTGGGGCC
CGAGTGGCGAGGAGGTGGGGGCCAGCGGCAGTAGCGGTGGCTTCTATGGAGTGAGCAGCC
AGTACGAGAGCCTGGAGCACATGACCCTCACCTGTTCCTCCAAGGTCTGCTCCTTTGGCA
AGCAGGTGGTGGAGAAGGTGGAGACGGAGCGTGCCCAGCTGGAGGACGGGAGGTTCGTGT
ACCGCCTGTTGCGCTCACCCATGTGCGAGTACCTGGTGAATTTCCTGCACAAGCTGCGGC
AGCTGCCCGAGCGCTATATGATGAACAGCGTCCTGGAGAACTTCACCATCCTCCAGGTGG
TGACAAACAGAGACACCCAGGAACTGCTGCTCTGCACCGCCTACGTCTTCGAGGTCTCCA
CCAGTGAGCGGGGGGCCCAGCACCACATTTACCGCCTGGTCAGGGACTGAAGGGGGACCC
CCCCAGAGTGGCTCACCCCCGGAATGCCCTCCTCCCGAGAAGGACTTCCAGCTTTTCTCA
CGCTTCTTACTTGGGGAGGGGGCTGCTCCCGGTTAGGGCCTTAAAAGCTGGGTGGTGAGT
TGCATGGGCTGCGACTGAGAAGAGAGGATGGATCCTGATTTGGGGACCTCACAGGGGTGC
CTGAAAGGACAGATCACTCCAGAGCATTAGACACTGGGGACAGGAGTGAGACAAGCCCTG
GGACAGCCCTGCTTTCTGTCTCTGACAGGCGCCCTCCCCTCCTCTGTTTTGGAGGACCCT
ATTTACACATTGGCTTGTCTCTCTCTGTGTCCCCCCCACCCAAACCTGCCTCTCCTTACC
AGCCCTACCCCAGGGACCCTGATATCAAATATTGCAGGTTAACCCTTTCTGTGCAGGAGC
AGAGCCAGTGGGCCCTGGAAATATTTTTTTTTTTTTAATATAACAAGAGATATTTATAAG
TGGGTGTTAGGGTCGTGACTTTTTCTCAGCTGGGCAAGCAGGGGGTGAGACTTCTAATCT
CATGCCCTCTTTCTTCTAAATGAGCCGTGGGGCTAGACTGTTGCCTCCCCCTCCTCCCCT
CCCCTCAAAGTGTGTTGGTTTGTATTTTGACAGAGGATAAAGCTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTAGAGTTCTCAGCCTTCGTGGAACCACCGGATGCAGCTGACTCTTACCAGCGGCACC
TGTTCGTACACATCAGCCAGCACTGCCCCAGCCCTGGAGCGCCCCCCCTTGAGAGTGTGG
ATGTCCGGCAGATCTATGACAAATTCCCTGAGAAAAAGGGCGGGCTGCGGGAGCTGTATG
ATCGTGGGCCCCCCCACGCCTTCTTCCTGGTCAAGTTCTGGGCGGACCTGAACTGGGGCC
CGAGTGGCGAGGAGGTGGGGGCCAGCGGCAGTAGCGGTGGCTTCTATGGAGTGAGCAGCC
AGTACGAGAGCCTGGAGCACATGACCCTCACCTGTTCCTCCAAGGTCTGCTCCTTTGGCA
AGCAGGTGGTGGAGAAGGTGGAGACGGAGCGTGCCCAGCTGGAGGACGGGAGGTTCGTGT
ACCGCCTGTTGCGCTCACCCATGTGCGAGTACCTGGTGAATTTCCTGCACAAGCTGCGGC
AGCTGCCCGAGCGCTATATGATGAACAGCGTCCTGGAGAACTTCACCATCCTCCAGGTGG
TGACAAACAGAGACACCCAGGAACTGCTGCTCTGCACCGCCTACGTCTTCGAGGTCTCCA
CCAGTGAGCGGGGGGCCCAGCACCACATTTACCGCCTGGTCAGGGACTGAAGGGGGACCC
CCCCAGAGTGGCTCACCCCCGGAATGCCCTCCTCCCGAGAAGGACTTCCAGCTTTTCTCA
CGCTTCTTACTTGGGGAGGGGGCTGCTCCCGGTTAGGGCCTTAAAAGCTGGGTGGTGAGT
TGCATGGGCTGCGACTGAGAAGAGAGGATGGATCCTGATTTGGGGACCTCACAGGGGTGC
CTGAAAGGACAGATCACTCCAGAGCATTAGACACTGGGGACAGGAGTGAGACAAGCCCTG
GGACAGCCCTGCTTTCTGTCTCTGACAGGCGCCCTCCCCTCCTCTGTTTTGGAGGACCCT
ATTTACACATTGGCTTGTCTCTCTCTGTGTCCCCCCCACCCAAACCTGCCTCTCCTTACC
AGCCCTACCCCAGGGACCCTGATATCAAATATTGCAGGTTAACCCTTTCTGTGCAGGAGC
AGAGCCAGTGGGCCCTGGAAATATTTTTTTTTTTTTAATATAACAAGAGATATTTATAAG
TGGGTGTTAGGGTCGTGACTTTTTCTCAGCTGGGCAAGCAGGGGGTGAGACTTCTAATCT
CATGCCCTCTTTCTTCTAAATGAGCCGTGGGGCTAGACTGTTGCCTCCCCCTCCTCCCCT
CCCCTCAAAGTGTGTTGGTTTGTATTTTGACAGAGGATAAAGCTATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874480|ref|XP_589094.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874480|ref|XP_589094.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               467-577, - strand, RNAz p=0.995751
               

               
               1004-1118, - strand, RNAz p=0.974982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               467-577, - strand, RNAz p=0.995751
               

               
               1004-1118, - strand, RNAz p=0.974982

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               56-1137, gnl|bosTau2|chr15 (33182098-33183177)
               

               
               56-1137, gnl|Hg17|chr19 (54543820-54535831)
               


               
               1172-1301, gnl|bosTau2|chr8 (51242906-51243033)
               

               
               1172-1301, gnl|Hg17|chr19 (54535794-54535683)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-1137, gnl|bosTau2|chr15 (33182098-33183177)
               

               
               56-1137, gnl|Hg17|chr19 (54543820-54535831)
               


               
               1172-1301, gnl|bosTau2|chr8 (51242906-51243033)
               

               
               1172-1301, gnl|Hg17|chr19 (54535794-54535683)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               eru (0.480192)
               

               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.480192)
               

               
               elu (0.385356)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	467-577, - strand, RNAz p=0.995751
	1004-1118, - strand, RNAz p=0.974982

	56-1137, gnl\|bosTau2\|chr15 (33182098-33183177)
	56-1137, gnl\|Hg17\|chr19 (54543820-54535831)

	1172-1301, gnl\|bosTau2\|chr8 (51242906-51243033)
	1172-1301, gnl\|Hg17\|chr19 (54535794-54535683)

	eru (0.480192)
	elu (0.385356)
	nlu (0.191681)
	eye (0.170503)
	cut (0.169924)
	cag (0.151194)
	ese (0.126502)
	eep (0.122564)