Non-Coding RNA Search

Ss1.1-Pig4-TMW8027C15.3

Sequence:


               
               TTTAACACAAAATGTTCTATTTGTCGTGCAGTAAATACGATAGAGAGGTACCTTAACATT
TTTTGGTTGTCCTTTTCCTCATACGTACTGCTACGTGCTCATGTCCACGTCCCATGGTAT
TCATTTGACTTCACCGTCCCGAGGTCCCGTTCTGTGTGTCGGTAACCCTGGGAAGGGAAG
AGCGAGGAGCCCCGCTGACCGGCTCCGGCTCCGGCCACCATGCGTTCCCGCCCTTGGCAG
GTGGGACTGGAGCCGGGTTCCCCAGCCAGGCTGGCTCAGAGGTCCAGCGTGAGGTGCGTG
GAGGGTCCTCCCACGTGGCACGCGGCCTGATGCCCCTGACTCCCTACCTGTCACCTCTGG
GGTCGCCTGCTGGCGTGGCCACTGCGGGCTCTCCTGGCTCCCAAGCACTCCGCAGCCCCG
TGTGAATGGCACCGTCACGCTGGCATGCACGGAAAGGGCTTTGGCATCCAGTCGGCACTC
CTTTGCCCTTGTTCACTATTCGGTTCTGATTTGCCCCTTGCCGTTGTTTCCAAAGATCAA
GGAATTGTTGCTAACCTTTGAAAGGACCAATGAGAACCTCCTGTTAACAAAACCTCTTCT
CGCGGAAGCGCCCTCTCCCACCGAGGGGAAGGTGCCTGGGCTCTGTCGTGGGGATCAATG
TGTGTGTCTGTGATTGCCTCTTGAGTTGGTTTGCTTTTTTTTGTTTTCCTTAGTCCTTTA
AAAAAAAAAATCCTTCCCTCCAACATGTTACTAAATTAATTTCTATTTTTGAGAAGTCAA
TCTCAACGTGTAAACAAAAAAATAATAAATCTCCATTATCAGGTGGCTGTTGTAAGCCCG
ACAGTGGTTGTGCAAGTGACTTGACCACTCTTCCTCTTACAGCTTTAATACCAGATTGGT
TAGGAGAGCCCAGGGGGCGGGGCGGGGAGGGGGGCGGGAGGAGGCAGTTCTGAACTAATG
GACTTTTTGTTGTTGTTTTGCATGTTTAATATAGAAGTTCTTGTTCCTTGGGAGATCATG
GCCTTTGAATATGCACACAACCTTTGAATTGTGCCTACTAAATTATAGCAGGGGACTCCG
GCACCCAAGGAATTCCGACTTTCTGGGATTATAATAGTAATTCCCAGCTGTACTCTGGAC
TTTATTTTGCTAACCATAATTGAGCAACTGTAAATTACTGCTATATTAATGTTTTAAAGC
ACTGGGATAGTCTAACTTGTAATTAATTATGTTTGCCAATTATCTGTTTGAAATAAATTT
GTGTCTGGACAGCTATTGAAACTGTTAAATTGTACAGATATTATTCATGACAGCTTTGTA
CTGTGGAATGTGCTTAATAAAAAACAAAAAGTTTGACCTTTGTCCAATAAATTGCTTAAG
TAATGTCAGTAAATCAAGTATGAGTATTATGCAGTACACCTGATCTGGCTTCCTGCAATT
GTTACTTCAGCTACTAATTCAAAGCCAATACTCTTAATAAAGTGTTGCAATACTCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAACACAAAATGTTCTATTTGTCGTGCAGTAAATACGATAGAGAGGTACCTTAACATT
TTTTGGTTGTCCTTTTCCTCATACGTACTGCTACGTGCTCATGTCCACGTCCCATGGTAT
TCATTTGACTTCACCGTCCCGAGGTCCCGTTCTGTGTGTCGGTAACCCTGGGAAGGGAAG
AGCGAGGAGCCCCGCTGACCGGCTCCGGCTCCGGCCACCATGCGTTCCCGCCCTTGGCAG
GTGGGACTGGAGCCGGGTTCCCCAGCCAGGCTGGCTCAGAGGTCCAGCGTGAGGTGCGTG
GAGGGTCCTCCCACGTGGCACGCGGCCTGATGCCCCTGACTCCCTACCTGTCACCTCTGG
GGTCGCCTGCTGGCGTGGCCACTGCGGGCTCTCCTGGCTCCCAAGCACTCCGCAGCCCCG
TGTGAATGGCACCGTCACGCTGGCATGCACGGAAAGGGCTTTGGCATCCAGTCGGCACTC
CTTTGCCCTTGTTCACTATTCGGTTCTGATTTGCCCCTTGCCGTTGTTTCCAAAGATCAA
GGAATTGTTGCTAACCTTTGAAAGGACCAATGAGAACCTCCTGTTAACAAAACCTCTTCT
CGCGGAAGCGCCCTCTCCCACCGAGGGGAAGGTGCCTGGGCTCTGTCGTGGGGATCAATG
TGTGTGTCTGTGATTGCCTCTTGAGTTGGTTTGCTTTTTTTTGTTTTCCTTAGTCCTTTA
AAAAAAAAAATCCTTCCCTCCAACATGTTACTAAATTAATTTCTATTTTTGAGAAGTCAA
TCTCAACGTGTAAACAAAAAAATAATAAATCTCCATTATCAGGTGGCTGTTGTAAGCCCG
ACAGTGGTTGTGCAAGTGACTTGACCACTCTTCCTCTTACAGCTTTAATACCAGATTGGT
TAGGAGAGCCCAGGGGGCGGGGCGGGGAGGGGGGCGGGAGGAGGCAGTTCTGAACTAATG
GACTTTTTGTTGTTGTTTTGCATGTTTAATATAGAAGTTCTTGTTCCTTGGGAGATCATG
GCCTTTGAATATGCACACAACCTTTGAATTGTGCCTACTAAATTATAGCAGGGGACTCCG
GCACCCAAGGAATTCCGACTTTCTGGGATTATAATAGTAATTCCCAGCTGTACTCTGGAC
TTTATTTTGCTAACCATAATTGAGCAACTGTAAATTACTGCTATATTAATGTTTTAAAGC
ACTGGGATAGTCTAACTTGTAATTAATTATGTTTGCCAATTATCTGTTTGAAATAAATTT
GTGTCTGGACAGCTATTGAAACTGTTAAATTGTACAGATATTATTCATGACAGCTTTGTA
CTGTGGAATGTGCTTAATAAAAAACAAAAAGTTTGACCTTTGTCCAATAAATTGCTTAAG
TAATGTCAGTAAATCAAGTATGAGTATTATGCAGTACACCTGATCTGGCTTCCTGCAATT
GTTACTTCAGCTACTAATTCAAAGCCAATACTCTTAATAAAGTGTTGCAATACTCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               994-1150, + strand, RNAz p=0.913231

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               994-1150, + strand, RNAz p=0.913231

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_033645, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_033645, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1498, gnl|bosTau2|chr20 (2071323-2072856)
               

               
               1-1498, gnl|Hg17|chr5 (171222712-171221158)
               

               
               1-1498, gnl|Mm7|chr11 (32697428-32698802)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1498, gnl|bosTau2|chr20 (2071323-2072856)
               

               
               1-1498, gnl|Hg17|chr5 (171222712-171221158)
               

               
               1-1498, gnl|Mm7|chr11 (32697428-32698802)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               spc (0.453463)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.453463)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

	1-1498, gnl\|bosTau2\|chr20 (2071323-2072856)
	1-1498, gnl\|Hg17\|chr5 (171222712-171221158)
	1-1498, gnl\|Mm7\|chr11 (32697428-32698802)

	spc (0.453463)
	fce (0.271592)
	ova (0.258264)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	sto (0.179824)
	fbs (0.175346)
	rec (0.17307)
	cut (0.169924)
	fco (0.157208)
	eli (0.151814)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	jej (0.0989218)