Non-Coding RNA Search

Ss1.1-Pig4-TMW8027C20.3

Sequence:


               
               GCCTCGGCGCCCTGCACAGGTTCAACCGGGCGGCACTCATCAATGTGGGCTTCCTGGAGA
GCGGCAACAGCACGGACTACATCGCCATGCATGACGTGGACCTGCTCCCTCTCAACGAGG
AGCTCGACTATGGCTTCCCGGAGGCCGGGCCCTTCCATGTGGCCTCCCCAGAGCTCCATC
CGCTCTACCACTACAAGACCTATGTCGGCGGCATCCTGCTGCTCTCCAAGCAGCACTACC
AGCTGTGCAATGGGATGTCCAACCGCTTCTGGGGCTGGGGCCGCGAAGATGATGAGTTCT
ACCGACGCATCAAAGGAGCTGGGCTCCAGCTTTTCCGCCCCTCGGGAATCACAACTGGGT
ACAAGACTTTTCGCCACCTGCATGACCCAGCCTGGAGGAAGAGGGACCAGAAGCGCATCG
CAGCTCAAAAACAGGAGCAGTTCAAGGTGGACCGGGAGGGAGGCCTGAGCACCGTGAAGT
ACCGTGTGGATTCGCGAACAGCTCTGTCTGTGGGCGGGGCCCCTTGCACTGTTCTCAACA
TCCTGTTGGACTGTGACAAGGCTGCCACTCCCTGGTGCACATTTGGCTGAGTTGGCTGGA
CAGGAAGGAAGCCTGTGCCTACAGGCCACGCTGCTACTCAGGTCCAAGACAAAGCCTCAG
GCCCCGGGCTCCGCTCCAGTAGAACATGGAGTGGCCTGAAGTAATGGACAGCAAGCCATG
TGTTTGCAGCAGCCCAGCCCCCAGAGGCAGGCTTGAGCCGGGACAAGACACACACAGGGT
GCCTGGGACGCTGCTGGCAATAAACAGTGATGGAGAGAGGCTGGGATGAACGTAGTTCCC
AACTGGGACTCTCCGCCCTGCCCTGCCCTCCTTCGTGTGCTGAGATATGCAGGCTTTTGT
TCCTTCCTCTGGACTGCCTCGTGCCAAGATACAGTTAGAAGCTGGGCCATTGACGTGGGT
GGCCAGTGTCATCAGGAGGGTTAAGACTGCAGAGACTTCATGCAAGCTCCATAGAAAGAG
CAGCTGAGACCAGCTCTGGCTGGTTGTCTGGAATGTGGACCAAGCATGGCCAGATCTTCT
GATTTTTCAAAAGAAACTAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCGGCGCCCTGCACAGGTTCAACCGGGCGGCACTCATCAATGTGGGCTTCCTGGAGA
GCGGCAACAGCACGGACTACATCGCCATGCATGACGTGGACCTGCTCCCTCTCAACGAGG
AGCTCGACTATGGCTTCCCGGAGGCCGGGCCCTTCCATGTGGCCTCCCCAGAGCTCCATC
CGCTCTACCACTACAAGACCTATGTCGGCGGCATCCTGCTGCTCTCCAAGCAGCACTACC
AGCTGTGCAATGGGATGTCCAACCGCTTCTGGGGCTGGGGCCGCGAAGATGATGAGTTCT
ACCGACGCATCAAAGGAGCTGGGCTCCAGCTTTTCCGCCCCTCGGGAATCACAACTGGGT
ACAAGACTTTTCGCCACCTGCATGACCCAGCCTGGAGGAAGAGGGACCAGAAGCGCATCG
CAGCTCAAAAACAGGAGCAGTTCAAGGTGGACCGGGAGGGAGGCCTGAGCACCGTGAAGT
ACCGTGTGGATTCGCGAACAGCTCTGTCTGTGGGCGGGGCCCCTTGCACTGTTCTCAACA
TCCTGTTGGACTGTGACAAGGCTGCCACTCCCTGGTGCACATTTGGCTGAGTTGGCTGGA
CAGGAAGGAAGCCTGTGCCTACAGGCCACGCTGCTACTCAGGTCCAAGACAAAGCCTCAG
GCCCCGGGCTCCGCTCCAGTAGAACATGGAGTGGCCTGAAGTAATGGACAGCAAGCCATG
TGTTTGCAGCAGCCCAGCCCCCAGAGGCAGGCTTGAGCCGGGACAAGACACACACAGGGT
GCCTGGGACGCTGCTGGCAATAAACAGTGATGGAGAGAGGCTGGGATGAACGTAGTTCCC
AACTGGGACTCTCCGCCCTGCCCTGCCCTCCTTCGTGTGCTGAGATATGCAGGCTTTTGT
TCCTTCCTCTGGACTGCCTCGTGCCAAGATACAGTTAGAAGCTGGGCCATTGACGTGGGT
GGCCAGTGTCATCAGGAGGGTTAAGACTGCAGAGACTTCATGCAAGCTCCATAGAAAGAG
CAGCTGAGACCAGCTCTGGCTGGTTGTCTGGAATGTGGACCAAGCATGGCCAGATCTTCT
GATTTTTCAAAAGAAACTAGAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61821349|ref|XP_584194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821349|ref|XP_584194.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               126-245, - strand, RNAz p=0.51493
               

               
               711-828, + strand, RNAz p=0.547151

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-245, - strand, RNAz p=0.51493
               

               
               711-828, + strand, RNAz p=0.547151

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_007255, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_007255, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-245, gnl|bosTau2|chr7 (21909664-21909908)
               

               
               1-245, gnl|Hg17|chr5 (176966889-176967134)
               

               
               1-245, gnl|Mm7|chr13 (54695088-54695333)
               


               
               432-1104, gnl|bosTau2|chr7 (21912008-21912677)
               

               
               432-1104, gnl|Hg17|chr5 (176969144-176969870)
               

               
               432-1104, gnl|Mm7|chr13 (54697127-54697814)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr7 (21909664-21909908)
               

               
               1-245, gnl|Hg17|chr5 (176966889-176967134)
               

               
               1-245, gnl|Mm7|chr13 (54695088-54695333)
               


               
               432-1104, gnl|bosTau2|chr7 (21912008-21912677)
               

               
               432-1104, gnl|Hg17|chr5 (176969144-176969870)
               

               
               432-1104, gnl|Mm7|chr13 (54697127-54697814)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	126-245, - strand, RNAz p=0.51493
	711-828, + strand, RNAz p=0.547151

	1-245, gnl\|bosTau2\|chr7 (21909664-21909908)
	1-245, gnl\|Hg17\|chr5 (176966889-176967134)
	1-245, gnl\|Mm7\|chr13 (54695088-54695333)

	432-1104, gnl\|bosTau2\|chr7 (21912008-21912677)
	432-1104, gnl\|Hg17\|chr5 (176969144-176969870)
	432-1104, gnl\|Mm7\|chr13 (54697127-54697814)

	ton (0.1755)
	fhi (0.169578)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)