Non-Coding RNA Search

Ss1.1-Pig4-TMW8027C21.3

Sequence:


               
               GTGAACCACCACAGTGAGAACCCAAGGGGAACAGGAACCACCTGCACCTAAGGGAGGTCC
TGAAGCTCTAGGGTGGGGTGGTGGGTGAGGGCACCAACCTGAGGACTGGACCGCAACAAG
AGGGGCTCCCCTGACCCCTACTCCCAACCCCCGCAGGGAGGGCCTTCTCCAGCCAGGCCA
GGAGAAGTGAAGGAGAAGAGGGGCCCTGTCTTGTCAGCTTTTTATTAGGTCATTATTATG
ATCAAGTTCAGAATGTAGCTGGCACTAAGGATCATTTTTGGCTTTTCTGTTTACTTTAAT
CTGTCTCTGAGCTGTGATTTTCCTGTATTATCTTTTTAAGGAACTTTCTACTTCCTTGTT
TCTTTGATATTACTTTAATAACAGCTTTTAGACCTCTCATTGCCCTTTTAATTTTTTCCT
CCTTTAACTCTAAATTTTAGCTGTTGCATTGATTTTGTTTTCCCCACTAACTTATAATTT
TGAATATCTTGTTTTATACTCAGAATCAATCTTTTTTCCTATTACATAATTAAAATTTAT
GAAATATTTCAAACGTCCAAAGTAATATTTAATGTTTATGTTAATTATAAAGCTTCACAT
CCATTTCAAACAGCATTTCAGATAAGTTAAGGAATCATTGGTTGATTTTCTTTTTCTGTA
AGTAATGGAGGGTCCCTAACATAAAAGTATGTTACTTCTGTTATTTTGTACTTCATAACT
TAAGTTTGTATTTTATAGGTGCTGTTTTGCTAGGCAAAGGGGATAGAATAAATGCAGTTT
AAAATAAACATGGAGTTGCTGCTGTGGCGCGGTGGGATTAGGGGTCTCTTGCGAGCACTG
AGACATAGGTTCAGTTCCCAGCCTGATCCCTGGCCTGGGAACTGCACATACCACCGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACCACCACAGTGAGAACCCAAGGGGAACAGGAACCACCTGCACCTAAGGGAGGTCC
TGAAGCTCTAGGGTGGGGTGGTGGGTGAGGGCACCAACCTGAGGACTGGACCGCAACAAG
AGGGGCTCCCCTGACCCCTACTCCCAACCCCCGCAGGGAGGGCCTTCTCCAGCCAGGCCA
GGAGAAGTGAAGGAGAAGAGGGGCCCTGTCTTGTCAGCTTTTTATTAGGTCATTATTATG
ATCAAGTTCAGAATGTAGCTGGCACTAAGGATCATTTTTGGCTTTTCTGTTTACTTTAAT
CTGTCTCTGAGCTGTGATTTTCCTGTATTATCTTTTTAAGGAACTTTCTACTTCCTTGTT
TCTTTGATATTACTTTAATAACAGCTTTTAGACCTCTCATTGCCCTTTTAATTTTTTCCT
CCTTTAACTCTAAATTTTAGCTGTTGCATTGATTTTGTTTTCCCCACTAACTTATAATTT
TGAATATCTTGTTTTATACTCAGAATCAATCTTTTTTCCTATTACATAATTAAAATTTAT
GAAATATTTCAAACGTCCAAAGTAATATTTAATGTTTATGTTAATTATAAAGCTTCACAT
CCATTTCAAACAGCATTTCAGATAAGTTAAGGAATCATTGGTTGATTTTCTTTTTCTGTA
AGTAATGGAGGGTCCCTAACATAAAAGTATGTTACTTCTGTTATTTTGTACTTCATAACT
TAAGTTTGTATTTTATAGGTGCTGTTTTGCTAGGCAAAGGGGATAGAATAAATGCAGTTT
AAAATAAACATGGAGTTGCTGCTGTGGCGCGGTGGGATTAGGGGTCTCTTGCGAGCACTG
AGACATAGGTTCAGTTCCCAGCCTGATCCCTGGCCTGGGAACTGCACATACCACCGGGCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               166-340, gnl|bosTau2|chr22 (8622544-8622369)
               


               
               349-576, gnl|bosTau2|chr22 (8625355-8625120)
               

               
               349-576, gnl|Hg17|chr3 (38261643-38261895)
               


               
               635-792, gnl|bosTau2|chr22 (8625101-8624945)
               

               
               635-792, gnl|canFam2|chr23 (11025712-11026110)
               

               
               635-792, gnl|dasNov1|scaffold_42144 (6043-6413)
               

               
               635-792, gnl|echTel1|scaffold_292888 (39200-38792)
               

               
               635-792, gnl|hg17|chr3 (38261865-38262186)
               

               
               635-792, gnl|Hg17|chr3 (38261914-38262097)
               

               
               635-792, gnl|loxAfr1|scaffold_70055 (9632-9244)
               

               
               635-792, gnl|panTro1|chr2 (39364367-39364692)
               

               
               635-792, gnl|rheMac2|chr2 (98312499-98312182)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-340, gnl|bosTau2|chr22 (8622544-8622369)
               


               
               349-576, gnl|bosTau2|chr22 (8625355-8625120)
               

               
               349-576, gnl|Hg17|chr3 (38261643-38261895)
               


               
               635-792, gnl|bosTau2|chr22 (8625101-8624945)
               

               
               635-792, gnl|canFam2|chr23 (11025712-11026110)
               

               
               635-792, gnl|dasNov1|scaffold_42144 (6043-6413)
               

               
               635-792, gnl|echTel1|scaffold_292888 (39200-38792)
               

               
               635-792, gnl|hg17|chr3 (38261865-38262186)
               

               
               635-792, gnl|Hg17|chr3 (38261914-38262097)
               

               
               635-792, gnl|loxAfr1|scaffold_70055 (9632-9244)
               

               
               635-792, gnl|panTro1|chr2 (39364367-39364692)
               

               
               635-792, gnl|rheMac2|chr2 (98312499-98312182)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	166-340, gnl\|bosTau2\|chr22 (8622544-8622369)

	349-576, gnl\|bosTau2\|chr22 (8625355-8625120)
	349-576, gnl\|Hg17\|chr3 (38261643-38261895)

	635-792, gnl\|bosTau2\|chr22 (8625101-8624945)
	635-792, gnl\|canFam2\|chr23 (11025712-11026110)
	635-792, gnl\|dasNov1\|scaffold_42144 (6043-6413)
	635-792, gnl\|echTel1\|scaffold_292888 (39200-38792)
	635-792, gnl\|hg17\|chr3 (38261865-38262186)
	635-792, gnl\|Hg17\|chr3 (38261914-38262097)
	635-792, gnl\|loxAfr1\|scaffold_70055 (9632-9244)
	635-792, gnl\|panTro1\|chr2 (39364367-39364692)
	635-792, gnl\|rheMac2\|chr2 (98312499-98312182)