Ss1.1-Pig4-TMW8027C24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTAGAAACAGCTCCACCCCATGAGTTAAAGAATACGTTCCAACTGCTTCATGAGATAC TGGTCATTGAGGATCCCATACAAGTAGAGCGAGTCAAATTTGTGTTTGAGACAGAAAACG GATTACTAGCTCTGATGCACCACAGTAATCATGTGGACAGCAGTCGCTGCTACCAGTGTG TCAAATTTCTTGTAACTCTTGCTCAAAAGTGTCCAGCTGCTAAAGAATACTTTAAGGAGA ATTCCCACCACTGGAGTTGGGCTGTACAGTGGCTACAGAAAAAGATGTCAGAACATTATT GGACACCGCAGAGTAATGTCTCTAATGAAACATCAACTGGAAAAACCTTTCAGCGAACGA TTTCAGCTCAGGACACACTGGCTTATGCCACAGCTCTGCTGAATGAGAAAGAGCAGTCGG GAAGCAGTAACGGGTCGGAGAGCAGTCCGGCGAATGAGAACGGAGAGAGGCACTTACAGC AGGGTTCTGAGTCGCCCATGATGATCGGCGAGTTAAGGAGTGACCTGGACGACGTCGATC CCTAGGGGACCTGCCCCGCACACTCTAAGGAGTCACGTCCCAGTTACTGGATGCTCAGCA CCTTTCTGAACTCCACATCTCATCCTTGAACTCTTTAGAAGAGCTGGGAAGCTGGAGGAT CAGGTGTTTTTAAAGAGAGCGCTTGTCAGCCCCTGGAGAGGCCTGGGGGCCGCCTGGCAG CAGGAGAACTCGGCCTGTGGATCCGCTGTCCCGGGGCCCAGCCCCTACGCGGATTAACAT TTCCGTGGAGATTTTAGGAAATAAAGCCGGTGACAGACTGTTTTGTTACATGAACATTCA AGAGTGAGTGAGGATAAAGCTGTTGCTTTCTCTGTGATGCTATTAAAAAAAAAAATTCCT TTGGTTTTTATATTAAAAAAAAGCAATCTGCCTTTAGATATGTGGGGGCAAATTTTTAAT CTTGCAGTAACATTGAATAGGAATATCCAATTTAAAATGTTGTAAAGATATGTGATTAAA AAAAATTCTTTTTCGCTGTAAAATAGTAGTTAAAGAATTCGGTTTACACAGACCTTTGTA TTTAATATGTCTCCCTATTTGTATAGAATTTCAGGTGGGTCTGGATGAGAGCCCTGGGCA TAAACTTGGATCTTGATGATATGTTACCAGGACCAGAAATTGGGAAATTTATTAAGCTCT TGAAAGTATTTTTCTGAGATAATTGAGATTGAAAGAGCAATAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTAGAAACAGCTCCACCCCATGAGTTAAAGAATACGTTCCAACTGCTTCATGAGATAC TGGTCATTGAGGATCCCATACAAGTAGAGCGAGTCAAATTTGTGTTTGAGACAGAAAACG GATTACTAGCTCTGATGCACCACAGTAATCATGTGGACAGCAGTCGCTGCTACCAGTGTG TCAAATTTCTTGTAACTCTTGCTCAAAAGTGTCCAGCTGCTAAAGAATACTTTAAGGAGA ATTCCCACCACTGGAGTTGGGCTGTACAGTGGCTACAGAAAAAGATGTCAGAACATTATT GGACACCGCAGAGTAATGTCTCTAATGAAACATCAACTGGAAAAACCTTTCAGCGAACGA TTTCAGCTCAGGACACACTGGCTTATGCCACAGCTCTGCTGAATGAGAAAGAGCAGTCGG GAAGCAGTAACGGGTCGGAGAGCAGTCCGGCGAATGAGAACGGAGAGAGGCACTTACAGC AGGGTTCTGAGTCGCCCATGATGATCGGCGAGTTAAGGAGTGACCTGGACGACGTCGATC CCTAGGGGACCTGCCCCGCACACTCTAAGGAGTCACGTCCCAGTTACTGGATGCTCAGCA CCTTTCTGAACTCCACATCTCATCCTTGAACTCTTTAGAAGAGCTGGGAAGCTGGAGGAT CAGGTGTTTTTAAAGAGAGCGCTTGTCAGCCCCTGGAGAGGCCTGGGGGCCGCCTGGCAG CAGGAGAACTCGGCCTGTGGATCCGCTGTCCCGGGGCCCAGCCCCTACGCGGATTAACAT TTCCGTGGAGATTTTAGGAAATAAAGCCGGTGACAGACTGTTTTGTTACATGAACATTCA AGAGTGAGTGAGGATAAAGCTGTTGCTTTCTCTGTGATGCTATTAAAAAAAAAAATTCCT TTGGTTTTTATATTAAAAAAAAGCAATCTGCCTTTAGATATGTGGGGGCAAATTTTTAAT CTTGCAGTAACATTGAATAGGAATATCCAATTTAAAATGTTGTAAAGATATGTGATTAAA AAAAATTCTTTTTCGCTGTAAAATAGTAGTTAAAGAATTCGGTTTACACAGACCTTTGTA TTTAATATGTCTCCCTATTTGTATAGAATTTCAGGTGGGTCTGGATGAGAGCCCTGGGCA TAAACTTGGATCTTGATGATATGTTACCAGGACCAGAAATTGGGAAATTTATTAAGCTCT TGAAAGTATTTTTCTGAGATAATTGAGATTGAAAGAGCAATAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 369-480, gnl|bosTau2|chr3 (58768620-58768731) | |
| 369-480, gnl|canFam2|chr5 (57191373-57191255) | |
| 369-480, gnl|danRer3|chrUn (89422155-89422271) | |
| 369-480, gnl|dasNov1|scaffold_53685 (6856-6974) | |
| 369-480, gnl|fr1|chrUn (57383645-57383529) | |
| 369-480, gnl|galGal2|chr8 (25522242-25522360) | |
| 369-480, gnl|hg17|chr1 (55249504-55249622) | |
| 369-480, gnl|Hg17|chr1 (55249621-55249510) | |
| 369-480, gnl|loxAfr1|scaffold_2981 (122780-122662) | |
| 369-480, gnl|mm7|chr4 (105813300-105813182) | |
| 369-480, gnl|Mm7|chr4 (105813181-105813292) | |
| 369-480, gnl|monDom2|scaffold_40 (20891939-20891821) | |
| 369-480, gnl|oryCun1|scaffold_200729 (102272-102154) | |
| 369-480, gnl|panTro1|chr1 (53571858-53571976) | |
| 369-480, gnl|rheMac2|chr1 (57920916-57921034) | |
| 369-480, gnl|rn3|chr5 (127501217-127501099) | |
| 369-480, gnl|tetNig1|chr1_random (2420228-2420343) | |
| 369-480, gnl|xenTro1|scaffold_1 (5357705-5357589) | |
| 654-1249, gnl|bosTau2|chr3 (58769633-58770222) | |
| 654-1249, gnl|Hg17|chr1 (55246614-55246030) | |
| 654-1249, gnl|Mm7|chr4 (105815377-105815896) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 369-480, gnl|bosTau2|chr3 (58768620-58768731) | |
| 369-480, gnl|canFam2|chr5 (57191373-57191255) | |
| 369-480, gnl|danRer3|chrUn (89422155-89422271) | |
| 369-480, gnl|dasNov1|scaffold_53685 (6856-6974) | |
| 369-480, gnl|fr1|chrUn (57383645-57383529) | |
| 369-480, gnl|galGal2|chr8 (25522242-25522360) | |
| 369-480, gnl|hg17|chr1 (55249504-55249622) | |
| 369-480, gnl|Hg17|chr1 (55249621-55249510) | |
| 369-480, gnl|loxAfr1|scaffold_2981 (122780-122662) | |
| 369-480, gnl|mm7|chr4 (105813300-105813182) | |
| 369-480, gnl|Mm7|chr4 (105813181-105813292) | |
| 369-480, gnl|monDom2|scaffold_40 (20891939-20891821) | |
| 369-480, gnl|oryCun1|scaffold_200729 (102272-102154) | |
| 369-480, gnl|panTro1|chr1 (53571858-53571976) | |
| 369-480, gnl|rheMac2|chr1 (57920916-57921034) | |
| 369-480, gnl|rn3|chr5 (127501217-127501099) | |
| 369-480, gnl|tetNig1|chr1_random (2420228-2420343) | |
| 369-480, gnl|xenTro1|scaffold_1 (5357705-5357589) | |
| 654-1249, gnl|bosTau2|chr3 (58769633-58770222) | |
| 654-1249, gnl|Hg17|chr1 (55246614-55246030) | |
| 654-1249, gnl|Mm7|chr4 (105815377-105815896) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| sme (0.91631) | |
| vin (0.665115) | |
| ldo (0.38801) | |
| cut (0.339847) | |
| cte (0.29274) | |
| sug (0.254582) | |
| sag (0.182715) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.91631) | |
| vin (0.665115) | |
| ldo (0.38801) | |
| cut (0.339847) | |
| cte (0.29274) | |
| sug (0.254582) | |
| sag (0.182715) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| cty (0.10408) | |
| eje (0.0988338) |