Non-Coding RNA Search

Ss1.1-Pig4-TMW8027D01.5

Sequence:


               
               ACACATCTTGCCCACGCCGACGCCCATCCACCCCTCCTCCAGCCTCTCCTTCGGTCACCC
CCACCCGTCCAGCATGGTGACCGCCATGGGCTAGGGACTGCCCACACCAACCGACAGTCA
GATGCCGCCGAGGAAGGCGCCCCCAGGATAGGAGGACCAGACCCTTAGCTGCCCGTCCTT
CCCTGGAGACTGACACACCCCTGCCAGCGCAGCCGGAGCCCCACGCTGCCTCACCTGTGG
GCGCTCCACTCCATCGGCCGTCACTGTGAAGATTCACCAGAGGCTGGGAGGCCGCTTCAG
CCTGGCTGCCACCAGGTGGGGTTTCCTGCATGGACACCTGTTTGGAGAGCAGAAAGGACA
ACTTTATGAAGATGAAAGGAGGGGGCAAGGGACAAAAGGAGGAAACCATTTTTAGAAGAA
GAAGGAGTAGGCAAACATAATTTATTTTGCTCTTGTTTCTAACAAGGCCTGGGAGACTCA
GGAGGCATGGGCTGCCCTGAGCTCTCTGGTCTTCCTCAGAGCCAAGGGCCACTTGGCTGG
CCCGCCTGCCAGGCTCTGGGGGCAGGTCTCCAGAGCCCTCAACCCACATGCTTTCCTCTA
GCTCCCTCTCTGAAGCAGCTGGACCCAGGTTGGGCTGAGCCAAGCCAGAGGGGCCCCAGC
CGGGGAGGCTGAGCCAGTGCAGGCCCTGGCGGCCGGGCCCTGGAGTCCAGAGACAATCAC
GGGCGGTCCTGCGCAGATTCCCAGGCCAGGGCTGGGTCACAGGAAGGAAACATTTTCTTG
AGAGGGGAAACGTCTCCCAGATCGCTCCTCTGGCTCTGAGGCTGAAGCTGGTGTGACCCA
CGTCCCCTTAACGGGCCTGAGCCATAGCCTGCCTCCTCTGCCAGTGGACCCCTGTACATA
CATCTTTTTTTCTGCTAACTTCTCAACCCCCTCCTCTCCAACTCCGAGACAAAAGAAAAA
ATATATTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACATCTTGCCCACGCCGACGCCCATCCACCCCTCCTCCAGCCTCTCCTTCGGTCACCC
CCACCCGTCCAGCATGGTGACCGCCATGGGCTAGGGACTGCCCACACCAACCGACAGTCA
GATGCCGCCGAGGAAGGCGCCCCCAGGATAGGAGGACCAGACCCTTAGCTGCCCGTCCTT
CCCTGGAGACTGACACACCCCTGCCAGCGCAGCCGGAGCCCCACGCTGCCTCACCTGTGG
GCGCTCCACTCCATCGGCCGTCACTGTGAAGATTCACCAGAGGCTGGGAGGCCGCTTCAG
CCTGGCTGCCACCAGGTGGGGTTTCCTGCATGGACACCTGTTTGGAGAGCAGAAAGGACA
ACTTTATGAAGATGAAAGGAGGGGGCAAGGGACAAAAGGAGGAAACCATTTTTAGAAGAA
GAAGGAGTAGGCAAACATAATTTATTTTGCTCTTGTTTCTAACAAGGCCTGGGAGACTCA
GGAGGCATGGGCTGCCCTGAGCTCTCTGGTCTTCCTCAGAGCCAAGGGCCACTTGGCTGG
CCCGCCTGCCAGGCTCTGGGGGCAGGTCTCCAGAGCCCTCAACCCACATGCTTTCCTCTA
GCTCCCTCTCTGAAGCAGCTGGACCCAGGTTGGGCTGAGCCAAGCCAGAGGGGCCCCAGC
CGGGGAGGCTGAGCCAGTGCAGGCCCTGGCGGCCGGGCCCTGGAGTCCAGAGACAATCAC
GGGCGGTCCTGCGCAGATTCCCAGGCCAGGGCTGGGTCACAGGAAGGAAACATTTTCTTG
AGAGGGGAAACGTCTCCCAGATCGCTCCTCTGGCTCTGAGGCTGAAGCTGGTGTGACCCA
CGTCCCCTTAACGGGCCTGAGCCATAGCCTGCCTCCTCTGCCAGTGGACCCCTGTACATA
CATCTTTTTTTCTGCTAACTTCTCAACCCCCTCCTCTCCAACTCCGAGACAAAAGAAAAA
ATATATTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-251, - strand, RNAz p=0.98636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-251, - strand, RNAz p=0.98636

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               15-238, - strand, RNAmicro p=0.960805

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               15-238, - strand, RNAmicro p=0.960805

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-478, gnl|bosTau2|chr22 (46085574-46086003)
               

               
               2-478, gnl|Hg17|chr3 (129682652-129682189)
               

               
               2-478, gnl|Mm7|chr6 (88280495-88281042)
               


               
               667-972, gnl|bosTau2|chr22 (46086107-46086408)
               

               
               667-972, gnl|Hg17|chr3 (129682039-129681700)
               

               
               667-972, gnl|Mm7|chr6 (88281159-88281444)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-478, gnl|bosTau2|chr22 (46085574-46086003)
               

               
               2-478, gnl|Hg17|chr3 (129682652-129682189)
               

               
               2-478, gnl|Mm7|chr6 (88280495-88281042)
               


               
               667-972, gnl|bosTau2|chr22 (46086107-46086408)
               

               
               667-972, gnl|Hg17|chr3 (129682039-129681700)
               

               
               667-972, gnl|Mm7|chr6 (88281159-88281444)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pla (0.133672)

	2-478, gnl\|bosTau2\|chr22 (46085574-46086003)
	2-478, gnl\|Hg17\|chr3 (129682652-129682189)
	2-478, gnl\|Mm7\|chr6 (88280495-88281042)

	667-972, gnl\|bosTau2\|chr22 (46086107-46086408)
	667-972, gnl\|Hg17\|chr3 (129682039-129681700)
	667-972, gnl\|Mm7\|chr6 (88281159-88281444)