Non-Coding RNA Search

Ss1.1-Pig4-TMW8027D07.3.5

Sequence:


               
               ACAACCTTGCCCCTACTTCTCGCCCTCTAGCCCACCCAGTCCCGGCCCCTTTCCTGCAGC
CCAGTCTCAGGCTCTCCTCCTCCTGAAGCCCTTGGGTGGAGGGGAAGGAGCCCAGGCACC
AGGGGTCTGATTGTGAGCCGCCCCAAGGAGAGACGCCGCCTGCACCCTTGCCACTTCCAA
AGCAATAGAGGCAGAGGGGTTCCCTCTTTGCCACCTAGCCCAGCTTTGACCCTGGCATTG
ACTGGCCTCCTAAGAGAAAACTGGATCTTGGGAGGGGGTGGCATTGTTTCTTCCAATCTG
CTGATTCTCTTGGCTGCACCTTAAAAGCAGCTGTCTGCTCCCGTGACCCTCTAGCCCTTC
CGTTGGTCTCCAGGCCCCAGACAGCTGGGGCTGAAACTTTGAGGAAATGCCAGTGACTTA
TTCCAGAGTGCCTCAGTCAGGGGAGCTTCTCTGTAAAGAACCCTGGGTATTGAGCAAAAC
CTTATTAATATTATGGTTAATGACCTATAATTGGAAGCTTCCTGCCTTTTTTGGTTGCTC
CTGTGGAAAATACTGAAAAGATTGTTTTGTTTCGTTGTCTTTTTATAAAAGGGGAGGTGG
AGAGACCCCTTCAGAGCAGGGATTGTGCCGGGAGAGTGCCTCTGACTTTGGGACATTGCA
TCCACAGAAATTTCCAAGCTGGTGGTTTGTTTTGGGTTTTGGTTTTTATTTTTGTTGTTT
TTGGTTTGGAAAAACAAGCATTTTTACCGCGCACGTAAATGGTCAGCAGAAAAGGGAGCC
TCGGAGTGGCAGCTGATGGACCTGTGCCCTTTCTGGGTTCTCCTTTTCTCTGGGACTGTG
AGGGGGGAAATGGTTTTTAGAGGTGAGGGTTGGTCCGTATGGAGGAAAGAAATGTCTCTC
TTTGGGGACAGAGGAACCTGGGAGTTCCATCGAATTTCCTGCCATCTGCTCTTAGACACA
GCCTTGCCAGGAAGAGCCTGCCCTCCTCAGACCACAGGACCAGACACCTTGCCTCCATCT
TTCCAAGCACCGGGGCAAAAAACCACAAAGGAAAGGAAGAAAATTTATATATATATATAT
ATATATATATAATATAAAATCACTTGGTGATTAAAAAATAATTCCTCCATAAATAAAACT
CCTAAAGTCACTATGTTTAAAGGGTTTGGTTGTGTTTTTTGTTTTCGGAGAAATATTGTA
AATATATATTTTTTGTTGCTGATTTAGAGTCAATCTCCAATGTTGTGCTAAAAAATTAAA
TTAAATGTAAGCATTAAGGGGACAAGTCATGCTATCTCAATTGACACATTGGGGTTATTA
TGGGTCAGGGAAGAAGGGAAGGTAGCCGGACTTTTGTTTTTTAAACATTCTCCACTTTTG
GTTTTAGAAAGAGCAAGGACATCTTTCCTCTGACATGTGGGAATGGGAGATATTTGTGTA
ATAAAATTTTTAAAAGACAAAAAAGAAATAGCCTCCAATGGGAAATATTTTGATTTGGGT
TTTTTTTTTTTTTTAATAAAAAGGCTTTAAAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACCTTGCCCCTACTTCTCGCCCTCTAGCCCACCCAGTCCCGGCCCCTTTCCTGCAGC
CCAGTCTCAGGCTCTCCTCCTCCTGAAGCCCTTGGGTGGAGGGGAAGGAGCCCAGGCACC
AGGGGTCTGATTGTGAGCCGCCCCAAGGAGAGACGCCGCCTGCACCCTTGCCACTTCCAA
AGCAATAGAGGCAGAGGGGTTCCCTCTTTGCCACCTAGCCCAGCTTTGACCCTGGCATTG
ACTGGCCTCCTAAGAGAAAACTGGATCTTGGGAGGGGGTGGCATTGTTTCTTCCAATCTG
CTGATTCTCTTGGCTGCACCTTAAAAGCAGCTGTCTGCTCCCGTGACCCTCTAGCCCTTC
CGTTGGTCTCCAGGCCCCAGACAGCTGGGGCTGAAACTTTGAGGAAATGCCAGTGACTTA
TTCCAGAGTGCCTCAGTCAGGGGAGCTTCTCTGTAAAGAACCCTGGGTATTGAGCAAAAC
CTTATTAATATTATGGTTAATGACCTATAATTGGAAGCTTCCTGCCTTTTTTGGTTGCTC
CTGTGGAAAATACTGAAAAGATTGTTTTGTTTCGTTGTCTTTTTATAAAAGGGGAGGTGG
AGAGACCCCTTCAGAGCAGGGATTGTGCCGGGAGAGTGCCTCTGACTTTGGGACATTGCA
TCCACAGAAATTTCCAAGCTGGTGGTTTGTTTTGGGTTTTGGTTTTTATTTTTGTTGTTT
TTGGTTTGGAAAAACAAGCATTTTTACCGCGCACGTAAATGGTCAGCAGAAAAGGGAGCC
TCGGAGTGGCAGCTGATGGACCTGTGCCCTTTCTGGGTTCTCCTTTTCTCTGGGACTGTG
AGGGGGGAAATGGTTTTTAGAGGTGAGGGTTGGTCCGTATGGAGGAAAGAAATGTCTCTC
TTTGGGGACAGAGGAACCTGGGAGTTCCATCGAATTTCCTGCCATCTGCTCTTAGACACA
GCCTTGCCAGGAAGAGCCTGCCCTCCTCAGACCACAGGACCAGACACCTTGCCTCCATCT
TTCCAAGCACCGGGGCAAAAAACCACAAAGGAAAGGAAGAAAATTTATATATATATATAT
ATATATATATAATATAAAATCACTTGGTGATTAAAAAATAATTCCTCCATAAATAAAACT
CCTAAAGTCACTATGTTTAAAGGGTTTGGTTGTGTTTTTTGTTTTCGGAGAAATATTGTA
AATATATATTTTTTGTTGCTGATTTAGAGTCAATCTCCAATGTTGTGCTAAAAAATTAAA
TTAAATGTAAGCATTAAGGGGACAAGTCATGCTATCTCAATTGACACATTGGGGTTATTA
TGGGTCAGGGAAGAAGGGAAGGTAGCCGGACTTTTGTTTTTTAAACATTCTCCACTTTTG
GTTTTAGAAAGAGCAAGGACATCTTTCCTCTGACATGTGGGAATGGGAGATATTTGTGTA
ATAAAATTTTTAAAAGACAAAAAAGAAATAGCCTCCAATGGGAAATATTTTGATTTGGGT
TTTTTTTTTTTTTTAATAAAAAGGCTTTAAAAACAG

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               1-104, - strand, RNAz p=0.990472
               

               
               143-452, - strand, RNAz p=0.986567
               

               
               531-639, - strand, RNAz p=0.528556
               

               
               759-956, - strand, RNAz p=0.996453
               

               
               997-1114, - strand, RNAz p=0.736676

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-104, - strand, RNAz p=0.990472
               

               
               143-452, - strand, RNAz p=0.986567
               

               
               531-639, - strand, RNAz p=0.528556
               

               
               759-956, - strand, RNAz p=0.996453
               

               
               997-1114, - strand, RNAz p=0.736676

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               41-144, - strand, RNAmicro p=0.987277
               

               
               356-481, + strand, RNAmicro p=0.983151

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-144, - strand, RNAmicro p=0.987277
               

               
               356-481, + strand, RNAmicro p=0.983151

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1534, gnl|bosTau2|chr29 (36360588-36359044)
               

               
               1-1534, gnl|Hg17|chr11 (66780555-66782124)
               

               
               1-1534, gnl|Mm7|chr19 (4212464-4210955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1534, gnl|bosTau2|chr29 (36360588-36359044)
               

               
               1-1534, gnl|Hg17|chr11 (66780555-66782124)
               

               
               1-1534, gnl|Mm7|chr19 (4212464-4210955)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	1-104, - strand, RNAz p=0.990472
	143-452, - strand, RNAz p=0.986567
	531-639, - strand, RNAz p=0.528556
	759-956, - strand, RNAz p=0.996453
	997-1114, - strand, RNAz p=0.736676

	41-144, - strand, RNAmicro p=0.987277
	356-481, + strand, RNAmicro p=0.983151

	1-1534, gnl\|bosTau2\|chr29 (36360588-36359044)
	1-1534, gnl\|Hg17\|chr11 (66780555-66782124)
	1-1534, gnl\|Mm7\|chr19 (4212464-4210955)

	amn (0.417711)
	elu (0.385356)
	cag (0.302389)
	fce (0.271592)
	cov (0.264306)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	fli (0.202881)
	nbm (0.198649)
	fcc (0.197785)
	aor (0.195274)
	csp (0.161186)
	lun (0.150489)
	isp (0.150376)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	cly (0.120642)
	pgl (0.118483)