Non-Coding RNA Search

Ss1.1-Pig4-TMW8027D20.3

Sequence:


               
               CCCAGTTCCCCTCTCCACCTCCCCCTCCTCTCAGCCTGCTGGTGCAACAGAGGAACAGGG
AGGCAGGTACTTGCTGACGGCCACTTTGTTCTCTCCCAGTGTTGGACCAAGACCCCCTCC
CCCTCACCGGGCACTGCCTGGAGGGGTGGGAAGTGGGGGATGAGCAGCACTCGAGCGACT
GAGCTTTCCGGTGTTGGTTTTGTCTGCTCCATGCAGCCTGTCCACCCGGGTTCTGGTGGC
AGGTCCTTGGGCTACAGCAGTGGTTGGGGGCGGGGTCAGTGCTTGGGCCTCTGCGCCAGA
TGGATGGTGCCAAGGGCTTCTTAATTCCAATACTAATGTGCTTTGCTGACCAAATACCTG
GTACCAGAGGATGGAGTTGCAGAGGCTGGAAGCAGTGTGGTGGCCCTGGGGCCCAGCCCC
AAACCAGGGGCTTTGTACATAGCTACGAAGAAAACACAAAGTGTATAAATCTGAGTATAT
ATTTACATGTCTTTTTAAAAGGGTCGTTACCAGAGATTTACCCACTGGGGAAGATGCTCC
TGGTGGCTGGGAGGCATCGGTTGCTATATATTAAAAACAAAGAAAAAAGAAAAAAAAAAA
AGGAAAATGTTTTTAAAAAGGTCATATATTTTTTGCTACTTTTGCTGTTTTATTTTTTTA
AATTATGTTCTAAACCTATTTTCAGTTTAGGTCCCTCAATAAAAATTGCTGCTGCTTCAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGTTCCCCTCTCCACCTCCCCCTCCTCTCAGCCTGCTGGTGCAACAGAGGAACAGGG
AGGCAGGTACTTGCTGACGGCCACTTTGTTCTCTCCCAGTGTTGGACCAAGACCCCCTCC
CCCTCACCGGGCACTGCCTGGAGGGGTGGGAAGTGGGGGATGAGCAGCACTCGAGCGACT
GAGCTTTCCGGTGTTGGTTTTGTCTGCTCCATGCAGCCTGTCCACCCGGGTTCTGGTGGC
AGGTCCTTGGGCTACAGCAGTGGTTGGGGGCGGGGTCAGTGCTTGGGCCTCTGCGCCAGA
TGGATGGTGCCAAGGGCTTCTTAATTCCAATACTAATGTGCTTTGCTGACCAAATACCTG
GTACCAGAGGATGGAGTTGCAGAGGCTGGAAGCAGTGTGGTGGCCCTGGGGCCCAGCCCC
AAACCAGGGGCTTTGTACATAGCTACGAAGAAAACACAAAGTGTATAAATCTGAGTATAT
ATTTACATGTCTTTTTAAAAGGGTCGTTACCAGAGATTTACCCACTGGGGAAGATGCTCC
TGGTGGCTGGGAGGCATCGGTTGCTATATATTAAAAACAAAGAAAAAAGAAAAAAAAAAA
AGGAAAATGTTTTTAAAAAGGTCATATATTTTTTGCTACTTTTGCTGTTTTATTTTTTTA
AATTATGTTCTAAACCTATTTTCAGTTTAGGTCCCTCAATAAAAATTGCTGCTGCTTCAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               366-517, + strand, RNAz p=0.653177

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-517, + strand, RNAz p=0.653177

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of M63888, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of M63888, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-546, gnl|bosTau2|chr27 (21776470-21775932)
               

               
               22-546, gnl|Hg17|chr8 (38390139-38389571)
               

               
               22-546, gnl|Mm7|chr8 (24330567-24331184)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-546, gnl|bosTau2|chr27 (21776470-21775932)
               

               
               22-546, gnl|Hg17|chr8 (38390139-38389571)
               

               
               22-546, gnl|Mm7|chr8 (24330567-24331184)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               sto (0.179824)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	22-546, gnl\|bosTau2\|chr27 (21776470-21775932)
	22-546, gnl\|Hg17\|chr8 (38390139-38389571)
	22-546, gnl\|Mm7\|chr8 (24330567-24331184)

	cmu (0.372787)
	pgl (0.35545)
	fce (0.271592)
	nms (0.213858)
	sto (0.179824)
	cag (0.151194)
	csk (0.140746)
	cst (0.140036)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	jca (0.11396)