Non-Coding RNA Search

Ss1.1-Pig4-TMW8027D23.3

Sequence:


               
               AAGTAGCCCTATAAGTTTCTCCTTTATTTTAATACAGGAATAGTGGGAGTGTAGACATGT
TTTCCATTTTGCATGCTGTTGGACAAGAATTTCGTAGATCTGGGACTGTGAGACCTGGGT
CACTTGGATTTTTATATTTTTGTATCGCCAAATGAAAAACTATGTTCTATGGAAAATTGC
CGTATTCCTATTACTTTAAGGACTTGTGTGTGACATGCTTTCTTTTGCATTTATCCTAGA
TGTATTTTTATCCAAAACTTTCAAAGGTGTATTTTGAAGGTGCTTCTATAAAAACAACAC
TACATGTATTAATTAAGTGATTTAAATATTCCTAGGATAGCTTTTATCTTCCGCCTCTCT
AAATATTAAATTTTGGTAAAGCTTTTCTATATTTCTTTACTTATTTTCTATCTCTTTTTC
ATTGCTGCTACCAATGTAAAACTTCCCATTTTTACTAGTGAAGAAAAAAAAGCTTTTTCG
AATTTTAGTATTTGAATTTTATGTATCACATATCATGCATTAATTAGACTCAGTGAAGCT
TCTGTTTTGAGCTACACCTGTCCTTTCAAGAGTTTGCCAAGCAATCTCGATGCTTTCCGC
TAATAGCAGCAAGTTCAGTGATATTTCTGCCAAAGTGATATTTTGCCCCAACTTTTGTGA
AAGTGATCAGTAAACAGAATGGGGTCTTTCATATCAGAAATACTGTGAATGAAAAATTGC
CAAATCCCTTCTTAGAATATTCTAGACACCCCTACGATACTATACCTCCCTGTCTTTAAA
GGTTTTGAAACATGGCCAAGTTTGAATTTGGGTTTGATTCCTTTATTGAAGATTATGGCA
TCAAAACATTTATAAGCAAATGTTTGAGGACAACGCTAGGTTGAATGTCAACAACCATGT
CGTAATTTGGTTTGGATGTGCTAAAGAGAGCAATTATGATTTGCCTAACCACAAACCCAT
AAATGTATATTTCACTCTTTTCTACTTGAAGACATTCATGTATATATTTTGCTTAACCTC
AGATGTATTTAAAAAGAATAAAAAATTGTGTCAAAATTCTTCCAATAAAATTTGTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTAGCCCTATAAGTTTCTCCTTTATTTTAATACAGGAATAGTGGGAGTGTAGACATGT
TTTCCATTTTGCATGCTGTTGGACAAGAATTTCGTAGATCTGGGACTGTGAGACCTGGGT
CACTTGGATTTTTATATTTTTGTATCGCCAAATGAAAAACTATGTTCTATGGAAAATTGC
CGTATTCCTATTACTTTAAGGACTTGTGTGTGACATGCTTTCTTTTGCATTTATCCTAGA
TGTATTTTTATCCAAAACTTTCAAAGGTGTATTTTGAAGGTGCTTCTATAAAAACAACAC
TACATGTATTAATTAAGTGATTTAAATATTCCTAGGATAGCTTTTATCTTCCGCCTCTCT
AAATATTAAATTTTGGTAAAGCTTTTCTATATTTCTTTACTTATTTTCTATCTCTTTTTC
ATTGCTGCTACCAATGTAAAACTTCCCATTTTTACTAGTGAAGAAAAAAAAGCTTTTTCG
AATTTTAGTATTTGAATTTTATGTATCACATATCATGCATTAATTAGACTCAGTGAAGCT
TCTGTTTTGAGCTACACCTGTCCTTTCAAGAGTTTGCCAAGCAATCTCGATGCTTTCCGC
TAATAGCAGCAAGTTCAGTGATATTTCTGCCAAAGTGATATTTTGCCCCAACTTTTGTGA
AAGTGATCAGTAAACAGAATGGGGTCTTTCATATCAGAAATACTGTGAATGAAAAATTGC
CAAATCCCTTCTTAGAATATTCTAGACACCCCTACGATACTATACCTCCCTGTCTTTAAA
GGTTTTGAAACATGGCCAAGTTTGAATTTGGGTTTGATTCCTTTATTGAAGATTATGGCA
TCAAAACATTTATAAGCAAATGTTTGAGGACAACGCTAGGTTGAATGTCAACAACCATGT
CGTAATTTGGTTTGGATGTGCTAAAGAGAGCAATTATGATTTGCCTAACCACAAACCCAT
AAATGTATATTTCACTCTTTTCTACTTGAAGACATTCATGTATATATTTTGCTTAACCTC
AGATGTATTTAAAAAGAATAAAAAATTGTGTCAAAATTCTTCCAATAAAATTTGTTTAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1073, gnl|bosTau2|chr16 (52493404-52494467)
               

               
               1-1073, gnl|Hg17|chr1 (101158254-101159317)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1073, gnl|bosTau2|chr16 (52493404-52494467)
               

               
               1-1073, gnl|Hg17|chr1 (101158254-101159317)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-1073, gnl\|bosTau2\|chr16 (52493404-52494467)
	1-1073, gnl\|Hg17\|chr1 (101158254-101159317)

	tra (0.246184)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	spl (0.143184)
	nmm (0.132802)
	thg (0.126791)
	spc (0.113366)