Ss1.1-Pig4-TMW8027E04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGTTAAGTTGAAAGGCACATCCAGTATGCTGCTTACTAGAGTAAACTGTGCAGATTG GTCTCATGTCTGTACTGAGCAAAATGTTACTGAATTTCCTGTTGTAAAGATGTACAAGGG AGGTGAAAACCCAGTATCTTATGCTGGCATGCTAGGAACTGAAGACCTCCTGAAATTTAT CCAGCTCAGCAGGATTTCATGCCCAGTGAACATAACGTCTGTCCAAGAAGCAGAAGAATA TTTAAGTGGGGAATTATTTAAAGACGTAATCTCCTATTCCACTCTGTCAGTACTGGGGCT TTTTAGTCCAACCATGAAAACAGCAAAAGAAGAGTTCATTGAAGCAGGAAACTACCTAAA AGGATGTGTTATCACAGGAATTTATTCTGGAGAAGATGTTTCAATACTGTCAAATAAATA TGCTGTAACTCTCCCAGCCCTGCTGCTTGCCAGACACAAAGAAGGCAGAATAGAGAGCAT TCCACTGGCTAACACCCATGGGCAAAACATAGTTCAAATAGTAACAAATGCATCACTGGA AACATTTCCAGAAATCACTGTGGAAAATCTTCCTACTTATTTAAGACTTCAGAAACCATT ACTCATCTTATTCAGTGATGGCAGCATAGATCCTCAGCATAAAAAAGTAATATTGATGCT GGTAAAAGAAAAACACTTGGATTCACTTACCCCTTGCTGGTTGAATCTGAATAATACTCC TGTGGGAAGAGGAGTCTTACAGGCGTATTTTCATGTCTTACCCCCTCTGCCTCTTCTTGT TGTGGTGAATCTGCATTCAGGAGGCCAAGTATTTGCATTTCCTTCAGACCAGGCTATAAC TGAAGAGAACCTTTTATTGTGGCTGAAAAAATTAGAAGCAGGACAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGTTAAGTTGAAAGGCACATCCAGTATGCTGCTTACTAGAGTAAACTGTGCAGATTG GTCTCATGTCTGTACTGAGCAAAATGTTACTGAATTTCCTGTTGTAAAGATGTACAAGGG AGGTGAAAACCCAGTATCTTATGCTGGCATGCTAGGAACTGAAGACCTCCTGAAATTTAT CCAGCTCAGCAGGATTTCATGCCCAGTGAACATAACGTCTGTCCAAGAAGCAGAAGAATA TTTAAGTGGGGAATTATTTAAAGACGTAATCTCCTATTCCACTCTGTCAGTACTGGGGCT TTTTAGTCCAACCATGAAAACAGCAAAAGAAGAGTTCATTGAAGCAGGAAACTACCTAAA AGGATGTGTTATCACAGGAATTTATTCTGGAGAAGATGTTTCAATACTGTCAAATAAATA TGCTGTAACTCTCCCAGCCCTGCTGCTTGCCAGACACAAAGAAGGCAGAATAGAGAGCAT TCCACTGGCTAACACCCATGGGCAAAACATAGTTCAAATAGTAACAAATGCATCACTGGA AACATTTCCAGAAATCACTGTGGAAAATCTTCCTACTTATTTAAGACTTCAGAAACCATT ACTCATCTTATTCAGTGATGGCAGCATAGATCCTCAGCATAAAAAAGTAATATTGATGCT GGTAAAAGAAAAACACTTGGATTCACTTACCCCTTGCTGGTTGAATCTGAATAATACTCC TGTGGGAAGAGGAGTCTTACAGGCGTATTTTCATGTCTTACCCCCTCTGCCTCTTCTTGT TGTGGTGAATCTGCATTCAGGAGGCCAAGTATTTGCATTTCCTTCAGACCAGGCTATAAC TGAAGAGAACCTTTTATTGTGGCTGAAAAAATTAGAAGCAGGACAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 428-547, - strand, RNAz p=0.748927 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 428-547, - strand, RNAz p=0.748927 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 16-186, gnl|bosTau2|chr10 (8090968-8091138) | |
| 16-186, gnl|canFam2|chr8 (31709972-31710435) | |
| 16-186, gnl|dasNov1|scaffold_7930 (22411-21994) | |
| 16-186, gnl|echTel1|scaffold_316401 (1350-1731) | |
| 16-186, gnl|hg17|chr14 (52006764-52007220) | |
| 16-186, gnl|Hg17|chr14 (52007150-52006980) | |
| 16-186, gnl|loxAfr1|scaffold_6477 (68403-68866) | |
| 16-186, gnl|mm7|chr14 (40469824-40470222) | |
| 16-186, gnl|Mm7|chr14 (40470160-40469990) | |
| 16-186, gnl|monDom2|scaffold_6 (100839340-100839840) | |
| 16-186, gnl|oryCun1|scaffold_136873 (2107-2559) | |
| 16-186, gnl|panTro1|chr15 (51456083-51456539) | |
| 16-186, gnl|rheMac2|chr7 (115443772-115444228) | |
| 16-186, gnl|rn3|chr15 (21038663-21039083) | |
| 409-547, gnl|bosTau2|chr10 (8102115-8102253) | |
| 409-547, gnl|canFam2|chr8 (31700220-31700423) | |
| 409-547, gnl|echTel1|scaffold_254543 (4128-3927) | |
| 409-547, gnl|galGal2|chr5 (54814764-54814990) | |
| 409-547, gnl|hg17|chr14 (51991703-51991908) | |
| 409-547, gnl|Hg17|chr14 (51991930-51991792) | |
| 409-547, gnl|mm7|chr14 (40463079-40463290) | |
| 409-547, gnl|Mm7|chr14 (40463312-40463174) | |
| 409-547, gnl|monDom2|scaffold_6 (100833758-100833971) | |
| 409-547, gnl|oryCun1|scaffold_203708 (109754-109549) | |
| 409-547, gnl|panTro1|chr15 (51441027-51441232) | |
| 409-547, gnl|rheMac2|chr7 (115428773-115428974) | |
| 409-547, gnl|rn3|chr15 (21032631-21032831) | |
| 709-884, gnl|bosTau2|chr10 (8110188-8110363) | |
| 709-884, gnl|canFam2|chr8 (31692492-31692749) | |
| 709-884, gnl|dasNov1|scaffold_66525 (6910-6651) | |
| 709-884, gnl|echTel1|scaffold_102414 (1730-1983) | |
| 709-884, gnl|galGal2|chr5 (54812454-54812700) | |
| 709-884, gnl|hg17|chr14 (51975654-51975914) | |
| 709-884, gnl|Hg17|chr14 (51975862-51975687) | |
| 709-884, gnl|loxAfr1|scaffold_6477 (29950-30202) | |
| 709-884, gnl|mm7|chr14 (40458632-40458893) | |
| 709-884, gnl|Mm7|chr14 (40458840-40458665) | |
| 709-884, gnl|monDom2|scaffold_6 (100823184-100823445) | |
| 709-884, gnl|panTro1|chr15 (51421263-51421523) | |
| 709-884, gnl|rheMac2|chr7 (115415368-115415628) | |
| 709-884, gnl|rn3|chr15 (21028135-21028398) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-186, gnl|bosTau2|chr10 (8090968-8091138) | |
| 16-186, gnl|canFam2|chr8 (31709972-31710435) | |
| 16-186, gnl|dasNov1|scaffold_7930 (22411-21994) | |
| 16-186, gnl|echTel1|scaffold_316401 (1350-1731) | |
| 16-186, gnl|hg17|chr14 (52006764-52007220) | |
| 16-186, gnl|Hg17|chr14 (52007150-52006980) | |
| 16-186, gnl|loxAfr1|scaffold_6477 (68403-68866) | |
| 16-186, gnl|mm7|chr14 (40469824-40470222) | |
| 16-186, gnl|Mm7|chr14 (40470160-40469990) | |
| 16-186, gnl|monDom2|scaffold_6 (100839340-100839840) | |
| 16-186, gnl|oryCun1|scaffold_136873 (2107-2559) | |
| 16-186, gnl|panTro1|chr15 (51456083-51456539) | |
| 16-186, gnl|rheMac2|chr7 (115443772-115444228) | |
| 16-186, gnl|rn3|chr15 (21038663-21039083) | |
| 409-547, gnl|bosTau2|chr10 (8102115-8102253) | |
| 409-547, gnl|canFam2|chr8 (31700220-31700423) | |
| 409-547, gnl|echTel1|scaffold_254543 (4128-3927) | |
| 409-547, gnl|galGal2|chr5 (54814764-54814990) | |
| 409-547, gnl|hg17|chr14 (51991703-51991908) | |
| 409-547, gnl|Hg17|chr14 (51991930-51991792) | |
| 409-547, gnl|mm7|chr14 (40463079-40463290) | |
| 409-547, gnl|Mm7|chr14 (40463312-40463174) | |
| 409-547, gnl|monDom2|scaffold_6 (100833758-100833971) | |
| 409-547, gnl|oryCun1|scaffold_203708 (109754-109549) | |
| 409-547, gnl|panTro1|chr15 (51441027-51441232) | |
| 409-547, gnl|rheMac2|chr7 (115428773-115428974) | |
| 409-547, gnl|rn3|chr15 (21032631-21032831) | |
| 709-884, gnl|bosTau2|chr10 (8110188-8110363) | |
| 709-884, gnl|canFam2|chr8 (31692492-31692749) | |
| 709-884, gnl|dasNov1|scaffold_66525 (6910-6651) | |
| 709-884, gnl|echTel1|scaffold_102414 (1730-1983) | |
| 709-884, gnl|galGal2|chr5 (54812454-54812700) | |
| 709-884, gnl|hg17|chr14 (51975654-51975914) | |
| 709-884, gnl|Hg17|chr14 (51975862-51975687) | |
| 709-884, gnl|loxAfr1|scaffold_6477 (29950-30202) | |
| 709-884, gnl|mm7|chr14 (40458632-40458893) | |
| 709-884, gnl|Mm7|chr14 (40458840-40458665) | |
| 709-884, gnl|monDom2|scaffold_6 (100823184-100823445) | |
| 709-884, gnl|panTro1|chr15 (51421263-51421523) | |
| 709-884, gnl|rheMac2|chr7 (115415368-115415628) | |
| 709-884, gnl|rn3|chr15 (21028135-21028398) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| pla (0.133672) | |
| ova (0.129132) |