Non-Coding RNA Search

Ss1.1-Pig4-TMW8027E05.3

Sequence:


               
               GTCCTCTTGTGCACAGTGAAGACAAAGAAATACCAGTGATGGTTTGACTTTTGTGTTATT
CTAAGGTGTATGTTACAACGTTAATGTGCAGTCAGTGCTTTTACTTTACAGGTTGATTGA
AATAGGATTATTATATGAGAATTTAAAAACAGTACTCTGGATCTTGTCACCCCTTTCCCT
CTCAGTGCAGTCCGCTTATTTATTAAATGGCATTGATTTTACCAGATGAAGTTACGTGAA
ATAATTATATCGCTTTCCTAATTATGCTAACTTTCTTTTTCTGCTCACCAGTCACTGATC
TTCTGTTAATGTCTCTTTTTTTAACTGACTCTTTTACCTGGAAAGACTCGTGGGGTCATT
GCTTGTTTTAATTTTGGAAACAGATGGGATGGCTTGCAGTGCCATATAATTAGTGGAAGG
TGATTTTAAGATCTTTGAAGTATTGCTTTAACTGAGTAGCTTTATAACCATCATGTGCAA
GATTTAGCGAAAAGATAAAGGCTGGATAAAATGTAGTTTTAAAACATCCACATTGTTTGA
TATTTTTTCCACCTACCTTCTAATTTTTGTTACTGCAAAAGGTCTCAATAATGATTTGGT
AGTATTAATTTTGTAGTCATTACTACCCTTCAATAAATTTTATTTTCACTAAATACTTAT
TGTAGTGTTTTAAAATTTTTTTTAAATACTATGTGAAATACGGAACATTGCTGTCTTTTA
TATTAAAGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTCTTGTGCACAGTGAAGACAAAGAAATACCAGTGATGGTTTGACTTTTGTGTTATT
CTAAGGTGTATGTTACAACGTTAATGTGCAGTCAGTGCTTTTACTTTACAGGTTGATTGA
AATAGGATTATTATATGAGAATTTAAAAACAGTACTCTGGATCTTGTCACCCCTTTCCCT
CTCAGTGCAGTCCGCTTATTTATTAAATGGCATTGATTTTACCAGATGAAGTTACGTGAA
ATAATTATATCGCTTTCCTAATTATGCTAACTTTCTTTTTCTGCTCACCAGTCACTGATC
TTCTGTTAATGTCTCTTTTTTTAACTGACTCTTTTACCTGGAAAGACTCGTGGGGTCATT
GCTTGTTTTAATTTTGGAAACAGATGGGATGGCTTGCAGTGCCATATAATTAGTGGAAGG
TGATTTTAAGATCTTTGAAGTATTGCTTTAACTGAGTAGCTTTATAACCATCATGTGCAA
GATTTAGCGAAAAGATAAAGGCTGGATAAAATGTAGTTTTAAAACATCCACATTGTTTGA
TATTTTTTCCACCTACCTTCTAATTTTTGTTACTGCAAAAGGTCTCAATAATGATTTGGT
AGTATTAATTTTGTAGTCATTACTACCCTTCAATAAATTTTATTTTCACTAAATACTTAT
TGTAGTGTTTTAAAATTTTTTTTAAATACTATGTGAAATACGGAACATTGCTGTCTTTTA
TATTAAAGTAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               19-732, gnl|bosTau2|chr7 (22487027-22486295)
               

               
               19-732, gnl|Hg17|chr5 (128476941-128477611)
               

               
               19-732, gnl|Mm7|chr18 (59066987-59067669)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-732, gnl|bosTau2|chr7 (22487027-22486295)
               

               
               19-732, gnl|Hg17|chr5 (128476941-128477611)
               

               
               19-732, gnl|Mm7|chr18 (59066987-59067669)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgp (0.461361)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               jca (0.11396)

	19-732, gnl\|bosTau2\|chr7 (22487027-22486295)
	19-732, gnl\|Hg17\|chr5 (128476941-128477611)
	19-732, gnl\|Mm7\|chr18 (59066987-59067669)

	mgp (0.461361)
	fbs (0.175346)
	mga (0.160205)
	bfe (0.149858)
	ste (0.135208)
	jca (0.11396)